Wall clock time and date at job start Tue Mar 31 2020 00:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34173 * 125.43777 * 2 1 4 4 C 1.47026 * 105.95496 * 180.12283 * 3 2 1 5 5 C 1.47378 * 127.19258 * 179.88815 * 4 3 2 6 6 O 1.21605 * 119.99963 * 186.15151 * 5 4 3 7 7 N 1.34780 * 120.00046 * 6.15527 * 5 4 3 8 8 C 1.47424 * 125.64526 * 5.37713 * 7 5 4 9 9 C 1.54916 * 104.82852 * 155.84125 * 8 7 5 10 10 C 1.55156 * 101.57953 * 37.00786 * 9 8 7 11 11 H 1.09004 * 110.72009 * 205.95709 * 10 9 8 12 12 N 1.46498 * 110.71797 * 82.86492 * 10 9 8 13 13 C 1.36939 * 120.00351 * 152.50515 * 12 10 9 14 14 H 1.08002 * 119.99877 * 359.97438 * 13 12 10 15 15 C 1.38806 * 120.00129 * 179.97438 * 13 12 10 16 16 N 1.31614 * 120.00384 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47067 * 269.99843 * 17 15 13 19 19 H 1.48497 * 109.47184 * 29.99794 * 17 15 13 20 20 H 1.48501 * 109.46954 * 150.00055 * 17 15 13 21 21 C 1.47014 * 125.64564 * 185.34379 * 7 5 4 22 22 H 1.09000 * 109.88447 * 300.50682 * 21 7 5 23 23 C 1.53004 * 109.88471 * 61.67735 * 21 7 5 24 24 C 1.36414 * 105.61367 * 359.62417 * 4 3 2 25 25 O 1.33657 * 108.39807 * 0.22923 * 24 4 3 26 26 H 1.08995 * 109.46925 * 180.27163 * 1 2 3 27 27 H 1.09005 * 109.47257 * 300.27175 * 1 2 3 28 28 H 1.08997 * 109.46799 * 60.27199 * 1 2 3 29 29 H 1.08002 * 127.02456 * 0.02562 * 3 2 1 30 30 H 1.08996 * 110.36693 * 37.01167 * 8 7 5 31 31 H 1.09000 * 110.37078 * 274.67781 * 8 7 5 32 32 H 1.09001 * 111.00182 * 278.93974 * 9 8 7 33 33 H 1.08993 * 111.00735 * 155.08565 * 9 8 7 34 34 H 0.97002 * 120.00254 * 332.50301 * 12 10 9 35 35 H 0.97005 * 120.00275 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47150 * 178.04390 * 23 21 7 37 37 H 1.08995 * 109.46736 * 298.04112 * 23 21 7 38 38 H 1.09000 * 109.47222 * 58.04153 * 23 21 7 39 39 H 1.07994 * 125.79962 * 180.22303 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6711 0.6028 -0.0030 5 6 4.9025 1.4125 -0.0065 6 8 5.9855 0.8715 -0.1216 7 7 4.8284 2.7525 0.1181 8 6 3.5993 3.5246 0.3759 9 6 4.0878 4.8399 1.0326 10 6 5.4038 5.1062 0.2551 11 1 6.0936 5.6988 0.8560 12 7 5.1266 5.7720 -1.0201 13 6 6.0721 6.5831 -1.5888 14 1 7.0220 6.7322 -1.0971 15 6 5.8096 7.2135 -2.7973 16 7 4.6519 7.0321 -3.3964 17 14 7.0992 8.3204 -3.5727 18 1 6.9116 9.7123 -3.0902 19 1 8.4535 7.8435 -3.1938 20 1 6.9576 8.2855 -5.0506 21 6 5.9599 3.6860 0.0200 22 1 6.7035 3.4484 0.7807 23 6 6.5885 3.5972 -1.3721 24 6 3.5790 -0.7582 0.0041 25 8 2.2852 -1.0935 0.0057 26 1 -0.3633 -1.0276 0.0049 27 1 -0.3634 0.5181 0.8876 28 1 -0.3633 0.5096 -0.8924 29 1 1.9596 2.1230 0.0004 30 1 2.9454 2.9805 1.0574 31 1 3.0815 3.7372 -0.5594 32 1 4.2841 4.6966 2.0952 33 1 3.3707 5.6454 0.8746 34 1 4.2733 5.6384 -1.4617 35 1 4.4686 7.4724 -4.2411 36 1 7.4041 4.3163 -1.4490 37 1 6.9751 2.5908 -1.5326 38 1 5.8343 3.8213 -2.1264 39 1 4.4103 -1.4476 0.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986193934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:10 Heat of formation + Delta-G solvation = -17.922317 kcal Electronic energy + Delta-G solvation = -22059.014673 eV Core-core repulsion = 18775.193250 eV Total energy + Delta-G solvation = -3283.821423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.55370 -41.09786 -38.79999 -35.81947 -34.32720 -33.22121 -32.74220 -32.10132 -30.43750 -27.63642 -26.84967 -25.51496 -25.03850 -22.87563 -22.34552 -20.64225 -19.67173 -19.33705 -18.27515 -17.61282 -17.32775 -17.11878 -16.37509 -16.13761 -15.43529 -15.30580 -15.12365 -14.68832 -14.47256 -14.26005 -13.98970 -13.87416 -13.73184 -13.48764 -13.15373 -12.97610 -12.79007 -12.70346 -12.43408 -12.31461 -12.18274 -11.81215 -11.62452 -11.51412 -11.08466 -10.90602 -10.79159 -9.72686 -9.42814 -8.99196 -7.91149 -5.18019 0.35908 1.04978 1.48865 1.50211 1.57204 1.83974 2.09322 2.30375 2.58106 3.38276 3.51232 3.67988 3.70651 3.89678 3.99547 4.09380 4.22894 4.38726 4.39927 4.48001 4.52763 4.59375 4.71724 4.78855 4.80816 4.84817 4.91931 4.98547 5.10648 5.13018 5.22892 5.27932 5.41880 5.49534 5.53471 5.59710 6.04510 6.30256 6.58814 7.13061 7.38638 8.10666 8.35095 9.31913 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.004433 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.969299 B = 6314.192998 C = 6638.715122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.009 4.009 3 C -0.209 4.209 4 C -0.259 4.259 5 C 0.591 3.409 6 O -0.591 6.591 7 N -0.597 5.597 8 C 0.100 3.900 9 C -0.131 4.131 10 C 0.163 3.837 11 H 0.080 0.920 12 N -0.715 5.715 13 C -0.227 4.227 14 H 0.076 0.924 15 C -0.068 4.068 16 N -0.966 5.966 17 Si 0.960 3.040 18 H -0.287 1.287 19 H -0.273 1.273 20 H -0.302 1.302 21 C 0.113 3.887 22 H 0.066 0.934 23 C -0.118 4.118 24 C 0.048 3.952 25 O -0.177 6.177 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.176 0.824 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.375 0.625 35 H 0.248 0.752 36 H 0.055 0.945 37 H 0.029 0.971 38 H 0.039 0.961 39 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 -12.724 11.073 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.228 4.228 4 C -0.263 4.263 5 C 0.383 3.617 6 O -0.474 6.474 7 N -0.329 5.329 8 C -0.022 4.022 9 C -0.170 4.170 10 C 0.052 3.948 11 H 0.098 0.902 12 N -0.353 5.353 13 C -0.359 4.359 14 H 0.094 0.906 15 C -0.260 4.260 16 N -0.617 5.617 17 Si 0.791 3.209 18 H -0.214 1.214 19 H -0.199 1.199 20 H -0.229 1.229 21 C 0.007 3.993 22 H 0.084 0.916 23 C -0.177 4.177 24 C -0.022 4.022 25 O -0.072 6.072 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.116 0.884 29 H 0.193 0.807 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.208 0.792 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.171 -13.215 10.980 19.476 hybrid contribution 0.927 0.829 -1.210 1.735 sum -8.244 -12.386 9.770 17.800 Atomic orbital electron populations 1.20552 0.81721 1.05334 1.05325 1.23069 0.95678 0.82981 1.04061 1.23224 0.89843 1.01180 1.08568 1.21424 0.93833 0.94758 1.16272 1.17349 0.87729 0.80847 0.75778 1.90714 1.30818 1.72114 1.53767 1.48390 1.10792 1.04547 1.69130 1.22731 0.86872 0.92366 1.00231 1.23113 0.97259 0.96534 1.00090 1.21459 0.96484 0.89233 0.87575 0.90178 1.42418 1.17274 1.53697 1.21921 1.19514 0.96293 1.18214 1.01841 0.90612 1.25354 0.98759 1.03023 0.98907 1.69783 1.24092 1.49128 1.18710 0.85333 0.79365 0.79245 0.77000 1.21401 1.19857 1.22921 1.22535 0.88583 0.91549 0.96632 0.91618 1.21586 1.00338 0.98580 0.97162 1.24629 0.84317 0.95146 0.98142 1.83785 1.16359 1.36033 1.71046 0.89343 0.87559 0.88353 0.80689 0.87666 0.92150 0.88069 0.88954 0.79232 0.94270 0.92637 0.95242 0.94161 0.75052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.40 71.24 0.74 -0.02 16 2 C -0.01 -0.19 7.28 24.76 0.18 -0.01 16 3 C -0.21 -4.89 9.17 23.65 0.22 -4.67 16 4 C -0.26 -7.54 6.20 -18.99 -0.12 -7.65 16 5 C 0.59 21.46 7.59 86.65 0.66 22.12 16 6 O -0.59 -25.13 16.18 -4.05 -0.07 -25.19 16 7 N -0.60 -20.51 3.06 -791.95 -2.43 -22.93 16 8 C 0.10 2.75 5.08 86.86 0.44 3.19 16 9 C -0.13 -3.56 6.68 31.99 0.21 -3.35 16 10 C 0.16 5.91 3.52 46.18 0.16 6.07 16 11 H 0.08 2.82 8.07 -2.38 -0.02 2.80 16 12 N -0.71 -32.93 3.83 -317.33 -1.22 -34.15 16 13 C -0.23 -11.78 8.44 84.03 0.71 -11.07 16 14 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 15 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 16 N -0.97 -57.12 13.06 21.65 0.28 -56.84 16 17 Si 0.96 45.34 29.55 68.60 2.03 47.37 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 21 C 0.11 4.24 3.41 45.34 0.15 4.40 16 22 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 23 C -0.12 -5.18 8.05 71.98 0.58 -4.60 16 24 C 0.05 1.17 11.91 67.39 0.80 1.97 16 25 O -0.18 -3.88 10.52 4.41 0.05 -3.84 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.11 0.73 8.14 -2.38 -0.02 0.72 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.18 3.58 5.21 -2.91 -0.02 3.57 16 30 H 0.11 2.27 5.85 -2.39 -0.01 2.26 16 31 H 0.06 1.81 7.81 -2.39 -0.02 1.79 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.38 18.73 7.84 -92.71 -0.73 18.01 16 35 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 36 H 0.05 2.48 7.42 -2.39 -0.02 2.46 16 37 H 0.03 1.29 7.08 -2.39 -0.02 1.28 16 38 H 0.04 1.97 7.35 -2.39 -0.02 1.96 16 39 H 0.23 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -69.45 320.44 4.20 -65.25 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.34 Total: 27.23 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.21 Total: 3.10 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -3.36 Total: -113.91 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.02 Total: -29.03 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.45 4.20 -65.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986193934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.331 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds