Wall clock time and date at job start Tue Mar 31 2020 00:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34180 * 125.43648 * 2 1 4 4 C 1.47017 * 105.95476 * 179.97438 * 3 2 1 5 5 C 1.47382 * 127.19282 * 179.97438 * 4 3 2 6 6 O 1.21615 * 119.99720 * 173.28110 * 5 4 3 7 7 N 1.34768 * 119.99974 * 353.27630 * 5 4 3 8 8 C 1.47427 * 125.65231 * 354.41326 * 7 5 4 9 9 C 1.54906 * 104.83433 * 204.16393 * 8 7 5 10 10 C 1.55163 * 101.58154 * 322.98853 * 9 8 7 11 11 H 1.08999 * 110.71513 * 276.96485 * 10 9 8 12 12 N 1.46500 * 110.72076 * 153.86760 * 10 9 8 13 13 C 1.36939 * 119.99771 * 86.45391 * 12 10 9 14 14 H 1.07993 * 120.00361 * 359.97438 * 13 12 10 15 15 C 1.38809 * 119.99475 * 180.02562 * 13 12 10 16 16 N 1.31617 * 120.00473 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99785 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47149 * 89.99897 * 17 15 13 19 19 H 1.48497 * 109.47139 * 329.99669 * 17 15 13 20 20 H 1.48497 * 109.46950 * 209.99522 * 17 15 13 21 21 C 1.47022 * 125.64842 * 174.45222 * 7 5 4 22 22 H 1.09001 * 109.88468 * 59.48599 * 21 7 5 23 23 C 1.53001 * 109.88279 * 298.32519 * 21 7 5 24 24 C 1.36423 * 105.61473 * 0.26718 * 4 3 2 25 25 O 1.33655 * 108.39509 * 359.56969 * 24 4 3 26 26 H 1.09006 * 109.46854 * 90.00475 * 1 2 3 27 27 H 1.08996 * 109.47467 * 210.00088 * 1 2 3 28 28 H 1.08998 * 109.47515 * 330.00525 * 1 2 3 29 29 H 1.08003 * 127.02280 * 359.97438 * 3 2 1 30 30 H 1.09000 * 110.36850 * 85.31726 * 8 7 5 31 31 H 1.09007 * 110.36439 * 323.00333 * 8 7 5 32 32 H 1.08997 * 111.00357 * 204.91550 * 9 8 7 33 33 H 1.08998 * 111.00513 * 81.05973 * 9 8 7 34 34 H 0.96997 * 119.99870 * 266.45810 * 12 10 9 35 35 H 0.97006 * 119.99731 * 0.02562 * 16 15 13 36 36 H 1.09005 * 109.46945 * 302.19366 * 23 21 7 37 37 H 1.09005 * 109.47125 * 62.18916 * 23 21 7 38 38 H 1.09002 * 109.47170 * 182.19039 * 23 21 7 39 39 H 1.08002 * 125.80080 * 179.74250 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4126 0.0003 6 8 5.9852 0.8728 0.1242 7 7 4.8287 2.7513 -0.1372 8 6 3.6012 3.5206 -0.4108 9 6 4.0938 4.8298 -1.0765 10 6 5.4044 5.1039 -0.2924 11 1 5.1917 5.6109 0.6488 12 7 6.3384 5.8896 -1.1027 13 6 6.2598 7.2567 -1.1056 14 1 5.5090 7.7557 -0.5110 15 6 7.1445 8.0011 -1.8738 16 7 8.0592 7.3930 -2.5988 17 14 7.0377 9.8660 -1.8773 18 1 7.9009 10.4134 -0.8000 19 1 5.6313 10.2818 -1.6440 20 1 7.4961 10.3856 -3.1908 21 6 5.9592 3.6862 -0.0402 22 1 6.7082 3.4418 -0.7935 23 6 6.5785 3.6107 1.3569 24 6 3.5790 -0.7582 -0.0052 25 8 2.2852 -1.0935 0.0005 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.9595 2.1231 -0.0004 30 1 3.0770 3.7417 0.5189 31 1 2.9521 2.9698 -1.0915 32 1 3.3754 5.6364 -0.9308 33 1 4.2974 4.6766 -2.1363 34 1 7.0125 5.4414 -1.6370 35 1 8.1149 6.4245 -2.5967 36 1 5.8179 3.8374 2.1041 37 1 6.9680 2.6071 1.5279 38 1 7.3905 4.3337 1.4339 39 1 4.4104 -1.4476 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986193937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:16 Heat of formation + Delta-G solvation = -1.583273 kcal Electronic energy + Delta-G solvation = -21688.381170 eV Core-core repulsion = 18405.268262 eV Total energy + Delta-G solvation = -3283.112908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.73913 -39.86085 -37.41917 -34.49169 -33.45022 -32.29323 -31.35633 -30.92461 -28.89118 -26.92991 -25.11467 -24.23224 -23.20220 -21.79202 -21.24976 -19.88620 -18.72179 -17.55503 -17.22210 -16.57342 -16.44379 -15.89652 -15.14863 -14.76055 -14.17164 -13.86190 -13.64515 -13.51814 -13.40795 -13.33965 -13.24782 -12.83482 -12.74346 -12.33849 -12.03828 -11.98559 -11.45073 -11.24231 -10.96448 -10.63031 -10.52957 -10.25033 -10.04589 -9.89473 -9.82963 -9.23045 -8.95993 -8.80230 -8.41145 -7.11225 -6.15331 -3.17104 1.28322 1.84666 2.62506 3.11713 3.39901 3.49337 3.53925 3.67913 4.27977 4.58211 4.62500 4.76284 4.94822 4.96795 5.10265 5.14128 5.19698 5.27467 5.38029 5.42371 5.48214 5.59050 5.64985 5.69782 5.83183 5.87507 5.96112 6.01001 6.12927 6.21979 6.36275 6.50192 6.52694 6.64289 6.83525 6.85461 7.70186 7.75735 8.30158 8.69830 9.14435 10.01016 10.14913 11.32642 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031630 B = 0.003810 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.028735 B = 7348.111842 C = 7896.887226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.017 4.017 3 C -0.195 4.195 4 C -0.229 4.229 5 C 0.600 3.400 6 O -0.548 6.548 7 N -0.600 5.600 8 C 0.094 3.906 9 C -0.156 4.156 10 C 0.182 3.818 11 H 0.066 0.934 12 N -0.726 5.726 13 C -0.335 4.335 14 H 0.067 0.933 15 C -0.042 4.042 16 N -0.941 5.941 17 Si 1.083 2.917 18 H -0.295 1.295 19 H -0.294 1.294 20 H -0.288 1.288 21 C 0.127 3.873 22 H 0.076 0.924 23 C -0.154 4.154 24 C 0.043 3.957 25 O -0.176 6.176 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.165 0.835 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.369 0.631 35 H 0.256 0.744 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.778 -14.043 6.338 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.214 4.214 4 C -0.233 4.233 5 C 0.390 3.610 6 O -0.428 6.428 7 N -0.333 5.333 8 C -0.029 4.029 9 C -0.197 4.197 10 C 0.070 3.930 11 H 0.084 0.916 12 N -0.368 5.368 13 C -0.466 4.466 14 H 0.085 0.915 15 C -0.240 4.240 16 N -0.586 5.586 17 Si 0.914 3.086 18 H -0.222 1.222 19 H -0.221 1.221 20 H -0.214 1.214 21 C 0.024 3.976 22 H 0.094 0.906 23 C -0.212 4.212 24 C -0.027 4.027 25 O -0.072 6.072 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.183 0.817 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.203 0.797 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.789 -13.125 5.910 20.638 hybrid contribution -0.437 -1.340 0.450 1.479 sum -15.226 -14.465 6.360 21.944 Atomic orbital electron populations 1.20330 0.84766 1.04186 1.03709 1.22348 0.94138 0.83855 1.06178 1.23109 0.90828 1.00037 1.07408 1.21434 0.93872 0.94003 1.14020 1.16860 0.87231 0.80371 0.76546 1.90776 1.29147 1.71257 1.51576 1.48285 1.10460 1.04826 1.69712 1.22689 0.87410 0.93254 0.99559 1.23576 1.00458 0.94714 1.00988 1.21175 0.89128 0.88278 0.94376 0.91592 1.42361 1.37341 1.03702 1.53425 1.20029 1.16895 0.82532 1.27133 0.91524 1.25799 0.95098 1.06488 0.96597 1.70848 1.35370 1.10149 1.42190 0.83190 0.74958 0.74186 0.76260 1.22250 1.22099 1.21376 1.21902 0.88248 0.89468 0.97990 0.90601 1.22040 1.01004 1.02505 0.95639 1.24327 0.83583 0.95454 0.99377 1.83743 1.16600 1.35530 1.71340 0.89943 0.90479 0.89167 0.81728 0.91628 0.90539 0.90440 0.90752 0.79739 0.93239 0.92934 0.92081 0.91083 0.76631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.40 36.01 0.37 -0.05 16 2 C -0.02 -0.16 7.28 -35.74 -0.26 -0.42 16 3 C -0.19 -2.17 9.16 -37.45 -0.34 -2.51 16 4 C -0.23 -3.13 6.20 -103.27 -0.64 -3.77 16 5 C 0.60 10.11 7.59 -12.54 -0.10 10.01 16 6 O -0.55 -10.76 16.20 5.26 0.09 -10.68 16 7 N -0.60 -9.81 3.06 -164.29 -0.50 -10.32 16 8 C 0.09 1.29 5.13 -2.53 -0.01 1.27 16 9 C -0.16 -2.61 6.77 -24.58 -0.17 -2.77 16 10 C 0.18 3.55 3.11 -66.09 -0.21 3.34 16 11 H 0.07 1.30 7.84 -51.93 -0.41 0.89 16 12 N -0.73 -17.74 5.25 -51.65 -0.27 -18.01 16 13 C -0.34 -9.12 9.98 -15.06 -0.15 -9.27 16 14 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 15 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 16 N -0.94 -28.80 13.70 55.49 0.76 -28.04 16 17 Si 1.08 25.47 29.92 -169.99 -5.09 20.38 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.13 2.33 3.18 -66.95 -0.21 2.11 16 22 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16 23 C -0.15 -2.64 9.10 37.16 0.34 -2.30 16 24 C 0.04 0.50 11.91 30.08 0.36 0.85 16 25 O -0.18 -1.92 10.52 7.65 0.08 -1.84 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.17 1.57 5.23 -52.48 -0.27 1.30 16 30 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 31 H 0.08 0.92 5.91 -51.92 -0.31 0.62 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.37 9.47 6.34 -40.82 -0.26 9.21 16 35 H 0.26 7.76 6.77 -40.82 -0.28 7.49 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 1.08 7.09 -51.93 -0.37 0.71 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.22 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -33.35 322.81 -6.47 -39.81 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.28 Total: 8.61 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.11 Total: -4.78 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.01 Total: -56.37 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.17 Total: -12.52 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.38 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.35 -6.47 -39.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986193937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.230 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds