Wall clock time and date at job start Tue Mar 31 2020 00:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34179 * 125.43209 * 2 1 4 4 C 1.47033 * 105.95100 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.18953 * 179.97438 * 4 3 2 6 6 O 1.21610 * 120.00236 * 8.58966 * 5 4 3 7 7 N 1.34780 * 119.99578 * 188.59542 * 5 4 3 8 8 C 1.47420 * 125.64901 * 358.43145 * 7 5 4 9 9 C 1.54910 * 104.93011 * 155.80143 * 8 7 5 10 10 C 1.55452 * 101.45021 * 37.00243 * 9 8 7 11 11 H 1.08995 * 110.70218 * 82.89163 * 10 9 8 12 12 N 1.46498 * 110.86118 * 206.07914 * 10 9 8 13 13 C 1.36944 * 119.99526 * 268.63617 * 12 10 9 14 14 H 1.08000 * 120.00151 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99594 * 179.97438 * 13 12 10 16 16 N 1.31614 * 119.99900 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99650 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46699 * 90.00784 * 17 15 13 19 19 H 1.48504 * 109.47109 * 210.00158 * 17 15 13 20 20 H 1.48492 * 109.47411 * 330.00646 * 17 15 13 21 21 C 1.47019 * 125.64778 * 178.41340 * 7 5 4 22 22 H 1.09008 * 109.87980 * 61.65640 * 21 7 5 23 23 C 1.52999 * 109.88139 * 300.65126 * 21 7 5 24 24 C 1.36418 * 105.61284 * 0.22689 * 4 3 2 25 25 O 1.33653 * 108.39869 * 359.63174 * 24 4 3 26 26 H 1.08997 * 109.47235 * 90.00640 * 1 2 3 27 27 H 1.09004 * 109.46817 * 210.00135 * 1 2 3 28 28 H 1.09001 * 109.47033 * 329.99812 * 1 2 3 29 29 H 1.07993 * 127.02775 * 359.97253 * 3 2 1 30 30 H 1.09004 * 110.36818 * 274.69629 * 8 7 5 31 31 H 1.09004 * 110.36593 * 36.90558 * 8 7 5 32 32 H 1.08990 * 111.01179 * 155.13822 * 9 8 7 33 33 H 1.09000 * 111.00000 * 278.99365 * 9 8 7 34 34 H 0.96994 * 120.00435 * 88.63343 * 12 10 9 35 35 H 0.97007 * 119.99497 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.47532 * 61.45284 * 23 21 7 37 37 H 1.09000 * 109.47177 * 181.45193 * 23 21 7 38 38 H 1.09001 * 109.47131 * 301.44885 * 23 21 7 39 39 H 1.07996 * 125.79598 * 179.75736 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6711 0.6029 0.0006 5 6 4.9024 1.4127 0.0003 6 8 4.8383 2.6170 0.1568 7 7 6.0996 0.8185 -0.1734 8 6 6.3242 -0.6289 -0.3407 9 6 7.6704 -0.7389 -1.0993 10 6 8.4773 0.4298 -0.4670 11 1 8.9289 0.1206 0.4756 12 7 9.5007 0.9188 -1.3942 13 6 10.7631 0.3891 -1.3619 14 1 11.0043 -0.3888 -0.6526 15 6 11.7327 0.8520 -2.2408 16 7 11.4388 1.8004 -3.1048 17 14 13.4549 0.1300 -2.1962 18 1 13.5284 -1.0319 -3.1182 19 1 14.4353 1.1615 -2.6208 20 1 13.7701 -0.3137 -0.8146 21 6 7.3978 1.5064 -0.2280 22 1 7.5865 2.0174 0.7162 23 6 7.4031 2.5172 -1.3765 24 6 3.5790 -0.7581 -0.0043 25 8 2.2853 -1.0935 0.0006 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.9595 2.1230 -0.0004 30 1 6.3957 -1.1166 0.6316 31 1 5.5203 -1.0721 -0.9284 32 1 8.1509 -1.6977 -0.9055 33 1 7.5299 -0.5830 -2.1689 34 1 9.2841 1.6177 -2.0310 35 1 12.1165 2.1242 -3.7187 36 1 6.6303 3.2664 -1.2049 37 1 8.3767 3.0046 -1.4271 38 1 7.2062 2.0007 -2.3160 39 1 4.4104 -1.4474 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986193939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:21 Heat of formation + Delta-G solvation = 9.220065 kcal Electronic energy + Delta-G solvation = -21680.991557 eV Core-core repulsion = 18398.347116 eV Total energy + Delta-G solvation = -3282.644441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.69164 -39.86248 -37.36713 -34.31800 -33.22654 -32.54041 -31.28321 -30.72984 -28.90994 -26.92927 -25.27566 -24.29615 -23.30266 -21.97086 -20.91580 -19.76895 -18.74566 -17.53552 -17.05963 -16.48547 -16.37791 -15.56253 -15.37621 -14.58830 -14.28498 -13.84358 -13.62756 -13.45699 -13.30564 -13.28381 -13.02616 -12.86749 -12.47789 -12.10013 -12.02574 -11.75740 -11.48851 -11.19106 -10.98382 -10.83306 -10.49880 -10.24570 -10.03632 -9.84930 -9.79619 -9.59070 -8.97758 -8.72532 -8.42602 -7.05692 -5.84070 -3.14207 1.29547 1.92843 2.65816 3.11287 3.39590 3.44852 3.46556 3.47009 4.36668 4.52465 4.54268 4.71852 4.90829 4.99397 5.13853 5.16763 5.23792 5.35561 5.39012 5.50104 5.51706 5.61756 5.62132 5.77328 5.84491 6.02371 6.06896 6.20104 6.21554 6.29685 6.50703 6.55378 6.69856 6.82776 6.87656 6.96508 7.63763 7.73252 8.33743 8.37487 9.45947 10.00586 10.35592 11.38257 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042692 B = 0.003599 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.704620 B = 7779.100861 C = 8172.984447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.021 4.021 3 C -0.163 4.163 4 C -0.221 4.221 5 C 0.597 3.403 6 O -0.539 6.539 7 N -0.604 5.604 8 C 0.082 3.918 9 C -0.154 4.154 10 C 0.174 3.826 11 H 0.067 0.933 12 N -0.716 5.716 13 C -0.246 4.246 14 H 0.072 0.928 15 C -0.010 4.010 16 N -0.930 5.930 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.129 3.871 22 H 0.073 0.927 23 C -0.159 4.159 24 C 0.001 3.999 25 O -0.176 6.176 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.158 0.842 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.391 0.609 35 H 0.257 0.743 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.279 -6.615 6.231 21.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.183 4.183 4 C -0.226 4.226 5 C 0.386 3.614 6 O -0.417 6.417 7 N -0.338 5.338 8 C -0.041 4.041 9 C -0.195 4.195 10 C 0.062 3.938 11 H 0.085 0.915 12 N -0.358 5.358 13 C -0.377 4.377 14 H 0.090 0.910 15 C -0.206 4.206 16 N -0.578 5.578 17 Si 0.740 3.260 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.025 3.975 22 H 0.091 0.909 23 C -0.217 4.217 24 C -0.068 4.068 25 O -0.072 6.072 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.175 0.825 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.229 0.771 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -19.301 -6.254 6.346 21.258 hybrid contribution 1.083 -0.109 -0.315 1.134 sum -18.217 -6.364 6.031 20.217 Atomic orbital electron populations 1.20311 0.84781 1.04115 1.03635 1.22309 0.94134 0.83802 1.06677 1.22481 0.89991 0.99658 1.06145 1.21533 0.94622 0.93330 1.13095 1.16874 0.81097 0.86544 0.76838 1.90759 1.86370 1.14113 1.50492 1.48421 1.06061 1.08294 1.71005 1.22763 0.99454 0.81768 1.00145 1.23629 0.93437 1.01857 1.00614 1.21230 0.88107 0.90276 0.94180 0.91505 1.42650 1.07422 1.45565 1.40193 1.19251 0.87178 1.15998 1.15311 0.91012 1.24767 0.98404 0.98893 0.98581 1.69662 1.33831 1.30721 1.23557 0.86170 0.84296 0.78038 0.77523 1.21680 1.21740 1.20696 1.21906 0.81611 0.94576 0.99376 0.90899 1.22002 1.03071 0.99010 0.97602 1.25421 0.84023 0.96161 1.01234 1.83743 1.16675 1.35488 1.71303 0.90023 0.90478 0.89252 0.82469 0.91164 0.90795 0.90335 0.90543 0.77091 0.93334 0.92146 0.90061 0.92591 0.76024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.40 36.01 0.37 -0.07 16 2 C -0.02 -0.22 7.28 -35.74 -0.26 -0.48 16 3 C -0.16 -2.05 10.91 -37.45 -0.41 -2.46 16 4 C -0.22 -3.12 6.25 -103.27 -0.65 -3.77 16 5 C 0.60 10.17 7.61 -12.54 -0.10 10.08 16 6 O -0.54 -10.95 15.93 5.27 0.08 -10.87 16 7 N -0.60 -9.62 3.08 -164.29 -0.51 -10.12 16 8 C 0.08 1.03 5.31 -2.53 -0.01 1.02 16 9 C -0.15 -2.41 6.80 -24.42 -0.17 -2.58 16 10 C 0.17 3.29 3.48 -65.94 -0.23 3.06 16 11 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 12 N -0.72 -17.11 4.95 -51.50 -0.26 -17.36 16 13 C -0.25 -6.54 9.96 -15.05 -0.15 -6.69 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 16 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 17 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 C 0.13 2.32 3.46 -66.96 -0.23 2.09 16 22 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 23 C -0.16 -3.06 7.93 37.16 0.29 -2.76 16 24 C 0.00 0.01 10.47 30.08 0.31 0.32 16 25 O -0.18 -1.96 10.52 7.65 0.08 -1.88 16 26 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 31 H 0.07 0.77 5.29 -51.93 -0.27 0.50 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.39 9.95 5.08 -40.82 -0.21 9.74 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.06 1.18 6.78 -51.93 -0.35 0.82 16 37 H 0.08 1.69 6.82 -51.93 -0.35 1.33 16 38 H 0.06 1.09 8.02 -51.93 -0.42 0.68 16 39 H 0.22 1.86 4.77 -52.49 -0.25 1.61 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -32.51 319.75 -6.59 -39.10 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.20 Total: 8.85 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.31 Total: -2.61 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.04 Total: -54.15 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.16 Total: -12.75 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.51 -6.59 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986193939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.318 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds