Wall clock time and date at job start Tue Mar 31 2020 00:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34179 * 125.43209 * 2 1 4 4 C 1.47033 * 105.95100 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.18953 * 179.97438 * 4 3 2 6 6 O 1.21610 * 120.00236 * 8.58966 * 5 4 3 7 7 N 1.34780 * 119.99578 * 188.59542 * 5 4 3 8 8 C 1.47420 * 125.64901 * 358.43145 * 7 5 4 9 9 C 1.54910 * 104.93011 * 155.80143 * 8 7 5 10 10 C 1.55452 * 101.45021 * 37.00243 * 9 8 7 11 11 H 1.08995 * 110.70218 * 82.89163 * 10 9 8 12 12 N 1.46498 * 110.86118 * 206.07914 * 10 9 8 13 13 C 1.36944 * 119.99526 * 268.63617 * 12 10 9 14 14 H 1.08000 * 120.00151 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99594 * 179.97438 * 13 12 10 16 16 N 1.31614 * 119.99900 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99650 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46699 * 90.00784 * 17 15 13 19 19 H 1.48504 * 109.47109 * 210.00158 * 17 15 13 20 20 H 1.48492 * 109.47411 * 330.00646 * 17 15 13 21 21 C 1.47019 * 125.64778 * 178.41340 * 7 5 4 22 22 H 1.09008 * 109.87980 * 61.65640 * 21 7 5 23 23 C 1.52999 * 109.88139 * 300.65126 * 21 7 5 24 24 C 1.36418 * 105.61284 * 0.22689 * 4 3 2 25 25 O 1.33653 * 108.39869 * 359.63174 * 24 4 3 26 26 H 1.08997 * 109.47235 * 90.00640 * 1 2 3 27 27 H 1.09004 * 109.46817 * 210.00135 * 1 2 3 28 28 H 1.09001 * 109.47033 * 329.99812 * 1 2 3 29 29 H 1.07993 * 127.02775 * 359.97253 * 3 2 1 30 30 H 1.09004 * 110.36818 * 274.69629 * 8 7 5 31 31 H 1.09004 * 110.36593 * 36.90558 * 8 7 5 32 32 H 1.08990 * 111.01179 * 155.13822 * 9 8 7 33 33 H 1.09000 * 111.00000 * 278.99365 * 9 8 7 34 34 H 0.96994 * 120.00435 * 88.63343 * 12 10 9 35 35 H 0.97007 * 119.99497 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.47532 * 61.45284 * 23 21 7 37 37 H 1.09000 * 109.47177 * 181.45193 * 23 21 7 38 38 H 1.09001 * 109.47131 * 301.44885 * 23 21 7 39 39 H 1.07996 * 125.79598 * 179.75736 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6711 0.6029 0.0006 5 6 4.9024 1.4127 0.0003 6 8 4.8383 2.6170 0.1568 7 7 6.0996 0.8185 -0.1734 8 6 6.3242 -0.6289 -0.3407 9 6 7.6704 -0.7389 -1.0993 10 6 8.4773 0.4298 -0.4670 11 1 8.9289 0.1206 0.4756 12 7 9.5007 0.9188 -1.3942 13 6 10.7631 0.3891 -1.3619 14 1 11.0043 -0.3888 -0.6526 15 6 11.7327 0.8520 -2.2408 16 7 11.4388 1.8004 -3.1048 17 14 13.4549 0.1300 -2.1962 18 1 13.5284 -1.0319 -3.1182 19 1 14.4353 1.1615 -2.6208 20 1 13.7701 -0.3137 -0.8146 21 6 7.3978 1.5064 -0.2280 22 1 7.5865 2.0174 0.7162 23 6 7.4031 2.5172 -1.3765 24 6 3.5790 -0.7581 -0.0043 25 8 2.2853 -1.0935 0.0006 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.9595 2.1230 -0.0004 30 1 6.3957 -1.1166 0.6316 31 1 5.5203 -1.0721 -0.9284 32 1 8.1509 -1.6977 -0.9055 33 1 7.5299 -0.5830 -2.1689 34 1 9.2841 1.6177 -2.0310 35 1 12.1165 2.1242 -3.7187 36 1 6.6303 3.2664 -1.2049 37 1 8.3767 3.0046 -1.4271 38 1 7.2062 2.0007 -2.3160 39 1 4.4104 -1.4474 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986193939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:19 Heat of formation + Delta-G solvation = -12.108666 kcal Electronic energy + Delta-G solvation = -21681.916440 eV Core-core repulsion = 18398.347116 eV Total energy + Delta-G solvation = -3283.569324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.58552 -41.19999 -38.80371 -36.01444 -34.23155 -33.72555 -32.71481 -32.06964 -30.54035 -27.74115 -26.81953 -25.67588 -24.97103 -23.10770 -21.85243 -21.07481 -20.07396 -19.43006 -18.08700 -17.58469 -17.39208 -16.92358 -16.67454 -16.31249 -15.76788 -15.36288 -14.98840 -14.58478 -14.49679 -14.00870 -13.99021 -13.83609 -13.75134 -13.61694 -13.22460 -13.02471 -12.93476 -12.84630 -12.71030 -12.41444 -12.08809 -12.06049 -11.61909 -11.55815 -11.07109 -10.91790 -10.83197 -9.75260 -9.55997 -9.01344 -7.93029 -5.22346 0.32142 1.01684 1.50423 1.51737 1.60010 1.72369 1.98611 2.26092 2.58585 3.34001 3.45057 3.62347 3.69028 3.76403 3.91601 3.96486 4.14520 4.30744 4.35133 4.38453 4.48376 4.52287 4.62176 4.67583 4.74933 4.76703 4.83762 4.87821 5.01094 5.08257 5.18798 5.23384 5.31472 5.40024 5.48517 5.55785 6.00139 6.28255 6.47681 7.07552 7.35667 8.08806 8.32288 9.30662 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042692 B = 0.003599 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.704620 B = 7779.100861 C = 8172.984447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.006 4.006 3 C -0.195 4.195 4 C -0.257 4.257 5 C 0.593 3.407 6 O -0.586 6.586 7 N -0.603 5.603 8 C 0.085 3.915 9 C -0.144 4.144 10 C 0.167 3.833 11 H 0.075 0.925 12 N -0.732 5.732 13 C -0.238 4.238 14 H 0.084 0.916 15 C -0.076 4.076 16 N -0.971 5.971 17 Si 0.974 3.026 18 H -0.287 1.287 19 H -0.302 1.302 20 H -0.267 1.267 21 C 0.134 3.866 22 H 0.065 0.935 23 C -0.144 4.144 24 C 0.027 3.973 25 O -0.174 6.174 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.153 0.847 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.380 0.620 35 H 0.250 0.750 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.839 -9.667 7.357 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.054 4.054 3 C -0.214 4.214 4 C -0.261 4.261 5 C 0.385 3.615 6 O -0.468 6.468 7 N -0.336 5.336 8 C -0.036 4.036 9 C -0.184 4.184 10 C 0.057 3.943 11 H 0.093 0.907 12 N -0.373 5.373 13 C -0.370 4.370 14 H 0.102 0.898 15 C -0.268 4.268 16 N -0.622 5.622 17 Si 0.803 3.197 18 H -0.214 1.214 19 H -0.229 1.229 20 H -0.192 1.192 21 C 0.029 3.971 22 H 0.083 0.917 23 C -0.203 4.203 24 C -0.042 4.042 25 O -0.070 6.070 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.171 0.829 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.215 0.785 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -20.901 -9.377 7.515 24.110 hybrid contribution 1.450 0.822 -0.613 1.776 sum -19.451 -8.555 6.902 22.342 Atomic orbital electron populations 1.20540 0.81704 1.05607 1.05023 1.22954 0.95652 0.82745 1.04091 1.22610 0.90023 1.00439 1.08374 1.21406 0.93795 0.94555 1.16365 1.17344 0.81988 0.86327 0.75857 1.90725 1.87048 1.16231 1.52757 1.48415 1.04936 1.09626 1.70626 1.23015 0.98525 0.79938 1.02157 1.23432 0.94588 1.00886 0.99541 1.21448 0.87571 0.91526 0.93780 0.90743 1.42829 1.07959 1.45626 1.40934 1.19683 0.88014 1.15062 1.14238 0.89805 1.25568 1.02199 0.99968 0.99105 1.69829 1.34621 1.32830 1.24929 0.85136 0.79745 0.76842 0.77983 1.21423 1.22866 1.19177 1.21662 0.82965 0.94239 0.98189 0.91659 1.21816 1.01396 0.99077 0.97985 1.25819 0.84772 0.95230 0.98425 1.83795 1.16664 1.35644 1.70849 0.88548 0.88835 0.87917 0.82893 0.87484 0.87831 0.88387 0.92485 0.78462 0.94135 0.92910 0.92207 0.93343 0.73095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.40 71.24 0.74 0.08 16 2 C -0.01 -0.11 7.28 24.76 0.18 0.07 16 3 C -0.19 -4.71 10.91 23.65 0.26 -4.46 16 4 C -0.26 -6.86 6.25 -18.99 -0.12 -6.98 16 5 C 0.59 20.03 7.61 86.65 0.66 20.69 16 6 O -0.59 -24.58 15.93 -4.06 -0.06 -24.65 16 7 N -0.60 -18.47 3.08 -791.95 -2.44 -20.91 16 8 C 0.08 1.83 5.31 86.86 0.46 2.30 16 9 C -0.14 -4.15 6.80 32.09 0.22 -3.93 16 10 C 0.17 6.15 3.48 46.28 0.16 6.31 16 11 H 0.07 2.64 8.09 -2.39 -0.02 2.62 16 12 N -0.73 -35.27 4.95 -316.84 -1.57 -36.84 16 13 C -0.24 -12.57 9.96 84.03 0.84 -11.73 16 14 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 15 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 16 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 17 Si 0.97 44.97 29.55 68.60 2.03 47.00 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 C 0.13 4.84 3.46 45.34 0.16 5.00 16 22 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 23 C -0.14 -5.83 7.93 71.98 0.57 -5.26 16 24 C 0.03 0.51 10.47 67.39 0.71 1.22 16 25 O -0.17 -3.26 10.52 4.46 0.05 -3.21 16 26 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 30 H 0.11 1.65 8.06 -2.39 -0.02 1.63 16 31 H 0.10 1.68 5.29 -2.38 -0.01 1.67 16 32 H 0.10 2.48 8.14 -2.39 -0.02 2.47 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.38 19.97 5.08 -92.71 -0.47 19.50 16 35 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 36 H 0.05 2.17 6.78 -2.39 -0.02 2.16 16 37 H 0.06 2.64 6.82 -2.39 -0.02 2.62 16 38 H 0.05 1.97 8.02 -2.39 -0.02 1.96 16 39 H 0.25 2.89 4.77 -2.91 -0.01 2.87 16 Total: -1.00 -73.11 319.75 4.18 -68.93 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.60 Total: 28.68 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.30 Total: -0.48 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -3.73 Total: -116.27 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.02 Total: -27.86 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -73.11 4.18 -68.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986193939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.821 kcal (2) G-P(sol) polarization free energy of solvation -73.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds