Wall clock time and date at job start Tue Mar 31 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35137 * 126.44153 * 2 1 4 4 O 1.33933 * 108.76334 * 179.97438 * 3 2 1 5 5 C 1.34913 * 109.38719 * 359.97438 * 4 3 2 6 6 C 1.46658 * 125.98897 * 180.02562 * 5 4 3 7 7 O 1.21690 * 120.00474 * 180.02562 * 6 5 4 8 8 N 1.34787 * 119.99580 * 0.02935 * 6 5 4 9 9 C 1.47423 * 125.64737 * 359.97438 * 8 6 5 10 10 C 1.54918 * 104.82733 * 204.15865 * 9 8 6 11 11 C 1.55159 * 101.58370 * 322.99265 * 10 9 8 12 12 H 1.08994 * 110.71739 * 276.96297 * 11 10 9 13 13 N 1.46496 * 110.71853 * 153.86180 * 11 10 9 14 14 C 1.36945 * 119.99718 * 86.45499 * 13 11 10 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 C 1.47018 * 125.64413 * 180.02562 * 8 6 5 23 23 H 1.09005 * 109.88310 * 59.49289 * 22 8 6 24 24 C 1.52994 * 109.88641 * 298.32780 * 22 8 6 25 25 C 1.36538 * 108.02361 * 0.27277 * 5 4 3 26 26 H 1.09003 * 109.46872 * 89.97847 * 1 2 3 27 27 H 1.09000 * 109.47435 * 209.98023 * 1 2 3 28 28 H 1.09002 * 109.47081 * 329.98049 * 1 2 3 29 29 H 1.07991 * 125.61915 * 0.02788 * 3 2 1 30 30 H 1.08998 * 110.36461 * 85.32600 * 9 8 6 31 31 H 1.08996 * 110.36670 * 322.99798 * 9 8 6 32 32 H 1.08998 * 110.99995 * 204.91741 * 10 9 8 33 33 H 1.08999 * 111.03527 * 81.07956 * 10 9 8 34 34 H 0.96996 * 120.00499 * 266.45229 * 13 11 10 35 35 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.46936 * 302.19248 * 24 22 8 37 37 H 1.08996 * 109.47276 * 62.19074 * 24 22 8 38 38 H 1.08996 * 109.47618 * 182.19271 * 24 22 8 39 39 H 1.08006 * 126.64591 * 179.69774 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 0.0006 5 6 3.6260 -0.6681 0.0015 6 6 4.8379 -1.4941 0.0029 7 8 4.7471 -2.7077 0.0032 8 7 6.0521 -0.9091 0.0039 9 6 6.3062 0.5431 0.0032 10 6 7.7212 0.6977 -0.6081 11 6 8.4508 -0.5399 -0.0221 12 1 8.8150 -0.3322 0.9840 13 7 9.5521 -0.9538 -0.8950 14 6 10.7873 -0.3786 -0.7583 15 1 10.9494 0.3804 -0.0073 16 6 11.8310 -0.7711 -1.5850 17 7 11.6333 -1.6957 -2.5006 18 14 13.5158 0.0141 -1.3990 19 1 13.6030 1.2116 -2.2728 20 1 13.7205 0.4175 0.0155 21 1 14.5631 -0.9627 -1.7917 22 6 7.3425 -1.6136 0.0048 23 1 7.4193 -2.2478 -0.8784 24 6 7.4712 -2.4624 1.2712 25 6 2.3408 -1.1291 -0.0046 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8901 0.5135 28 1 -0.3633 0.8898 0.5141 29 1 1.9771 2.1145 0.0004 30 1 6.2884 0.9317 1.0214 31 1 5.5684 1.0569 -0.6129 32 1 8.1917 1.6227 -0.2749 33 1 7.6845 0.6505 -1.6965 34 1 9.4064 -1.6352 -1.5697 35 1 12.3626 -1.9697 -3.0785 36 1 7.3739 -1.8229 2.1486 37 1 6.6859 -3.2180 1.2835 38 1 8.4456 -2.9508 1.2839 39 1 2.0266 -2.1625 -0.0102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986659619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:38 Heat of formation + Delta-G solvation = -6.078072 kcal Electronic energy + Delta-G solvation = -21636.248902 eV Core-core repulsion = 18352.941084 eV Total energy + Delta-G solvation = -3283.307818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.82151 -39.80528 -37.45588 -34.52188 -34.03776 -31.81666 -30.99797 -30.48650 -29.10239 -27.41590 -25.21735 -24.06769 -23.02806 -21.68185 -21.11701 -20.08847 -19.01022 -17.34096 -17.23228 -16.61963 -16.42256 -15.80960 -15.03261 -14.64056 -13.99385 -13.82426 -13.61081 -13.42914 -13.39731 -13.20731 -12.90556 -12.83066 -12.76346 -12.20633 -11.93608 -11.88301 -11.55909 -11.17160 -11.04510 -10.85406 -10.59098 -10.27309 -10.13801 -9.93755 -9.85873 -9.73089 -8.95872 -8.80438 -8.41177 -7.04681 -5.82630 -3.13330 1.01452 2.15632 2.59371 3.15705 3.24300 3.40453 3.45865 3.47614 4.41961 4.53679 4.58366 4.74631 5.00219 5.05492 5.24195 5.33943 5.36036 5.44308 5.49439 5.55737 5.61778 5.65327 5.73961 5.74842 5.83539 5.97818 6.06182 6.13432 6.23335 6.30167 6.43246 6.56799 6.57462 6.63344 6.82039 6.91094 7.61752 7.64909 8.15463 8.34610 9.46136 10.00153 10.35052 11.39528 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038727 B = 0.003632 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.832233 B = 7707.380375 C = 8079.178274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.195 4.195 3 C -0.019 4.019 4 O -0.156 6.156 5 C -0.061 4.061 6 C 0.610 3.390 7 O -0.525 6.525 8 N -0.598 5.598 9 C 0.098 3.902 10 C -0.155 4.155 11 C 0.177 3.823 12 H 0.066 0.934 13 N -0.715 5.715 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.281 1.281 21 H -0.291 1.291 22 C 0.127 3.873 23 H 0.081 0.919 24 C -0.155 4.155 25 C -0.126 4.126 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.207 0.793 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.029 6.207 6.270 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.196 4.196 3 C -0.088 4.088 4 O -0.051 6.051 5 C -0.113 4.113 6 C 0.398 3.602 7 O -0.403 6.403 8 N -0.330 5.330 9 C -0.025 4.025 10 C -0.197 4.197 11 C 0.065 3.935 12 H 0.084 0.916 13 N -0.355 5.355 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.207 1.207 21 H -0.217 1.217 22 C 0.024 3.976 23 H 0.099 0.901 24 C -0.213 4.213 25 C -0.147 4.147 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.223 0.777 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -19.654 5.768 6.314 21.434 hybrid contribution 0.661 0.321 -0.253 0.778 sum -18.992 6.089 6.061 20.845 Atomic orbital electron populations 1.20167 0.88769 1.02723 1.02249 1.20465 0.97594 0.92466 1.09116 1.24208 0.80407 0.99967 1.04249 1.84216 1.28774 1.21806 1.70300 1.22137 0.96063 0.80474 1.12600 1.16208 0.80273 0.86013 0.77731 1.90860 1.85485 1.12067 1.51925 1.48468 1.05133 1.08697 1.70693 1.22516 0.98809 0.80160 1.01002 1.23590 0.92866 1.01639 1.01564 1.21250 0.87041 0.90067 0.95136 0.91576 1.42350 1.06203 1.47317 1.39664 1.19197 0.86737 1.16669 1.14866 0.90962 1.24769 0.98296 0.99101 0.98474 1.69668 1.32010 1.32954 1.23092 0.86175 0.84044 0.78304 0.77539 1.21666 1.20681 1.21741 1.21980 0.81503 0.94834 0.99279 0.90059 1.22058 1.02872 0.99973 0.96425 1.21800 0.90512 1.00496 1.01862 0.91339 0.91353 0.91552 0.77680 0.91518 0.90485 0.90406 0.90563 0.77953 0.93352 0.92970 0.91910 0.90851 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.00 0.37 -0.17 16 2 C -0.20 -1.92 6.14 -104.93 -0.64 -2.57 16 3 C -0.02 -0.17 12.00 29.63 0.36 0.18 16 4 O -0.16 -1.92 7.86 4.99 0.04 -1.88 16 5 C -0.06 -0.87 6.93 -36.80 -0.25 -1.12 16 6 C 0.61 10.35 7.61 -12.86 -0.10 10.25 16 7 O -0.52 -10.19 15.91 5.20 0.08 -10.11 16 8 N -0.60 -9.88 3.06 -164.55 -0.50 -10.38 16 9 C 0.10 1.41 6.17 -2.53 -0.02 1.39 16 10 C -0.16 -2.60 6.77 -24.58 -0.17 -2.77 16 11 C 0.18 3.41 3.11 -66.10 -0.21 3.20 16 12 H 0.07 1.27 7.84 -51.93 -0.41 0.86 16 13 N -0.71 -17.34 5.25 -51.66 -0.27 -17.61 16 14 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 18 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 C 0.13 2.30 3.21 -66.96 -0.21 2.08 16 23 H 0.08 1.63 7.69 -51.93 -0.40 1.23 16 24 C -0.16 -2.62 9.10 37.15 0.34 -2.28 16 25 C -0.13 -1.57 10.57 -39.40 -0.42 -1.99 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.03 6.22 -51.93 -0.32 0.71 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.39 10.11 7.51 -40.82 -0.31 9.80 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.09 6.90 -51.93 -0.36 0.73 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -31.30 327.03 -6.79 -38.09 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.57 Total: 7.80 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.19 Total: -0.83 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.05 Total: -54.86 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.12 Total: -11.99 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.30 -6.79 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986659619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.011 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds