Wall clock time and date at job start Tue Mar 31 2020 01:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35137 * 126.44153 * 2 1 4 4 O 1.33933 * 108.76334 * 179.97438 * 3 2 1 5 5 C 1.34913 * 109.38719 * 359.97438 * 4 3 2 6 6 C 1.46658 * 125.98897 * 180.02562 * 5 4 3 7 7 O 1.21690 * 120.00474 * 180.02562 * 6 5 4 8 8 N 1.34787 * 119.99580 * 0.02935 * 6 5 4 9 9 C 1.47423 * 125.64737 * 359.97438 * 8 6 5 10 10 C 1.54918 * 104.82733 * 204.15865 * 9 8 6 11 11 C 1.55159 * 101.58370 * 322.99265 * 10 9 8 12 12 H 1.08994 * 110.71739 * 276.96297 * 11 10 9 13 13 N 1.46496 * 110.71853 * 153.86180 * 11 10 9 14 14 C 1.36945 * 119.99718 * 86.45499 * 13 11 10 15 15 H 1.07997 * 119.99756 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99878 * 179.97438 * 14 13 11 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48499 * 109.46981 * 150.00382 * 18 16 14 22 22 C 1.47018 * 125.64413 * 180.02562 * 8 6 5 23 23 H 1.09005 * 109.88310 * 59.49289 * 22 8 6 24 24 C 1.52994 * 109.88641 * 298.32780 * 22 8 6 25 25 C 1.36538 * 108.02361 * 0.27277 * 5 4 3 26 26 H 1.09003 * 109.46872 * 89.97847 * 1 2 3 27 27 H 1.09000 * 109.47435 * 209.98023 * 1 2 3 28 28 H 1.09002 * 109.47081 * 329.98049 * 1 2 3 29 29 H 1.07991 * 125.61915 * 0.02788 * 3 2 1 30 30 H 1.08998 * 110.36461 * 85.32600 * 9 8 6 31 31 H 1.08996 * 110.36670 * 322.99798 * 9 8 6 32 32 H 1.08998 * 110.99995 * 204.91741 * 10 9 8 33 33 H 1.08999 * 111.03527 * 81.07956 * 10 9 8 34 34 H 0.96996 * 120.00499 * 266.45229 * 13 11 10 35 35 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.46936 * 302.19248 * 24 22 8 37 37 H 1.08996 * 109.47276 * 62.19074 * 24 22 8 38 38 H 1.08996 * 109.47618 * 182.19271 * 24 22 8 39 39 H 1.08006 * 126.64591 * 179.69774 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 0.0006 5 6 3.6260 -0.6681 0.0015 6 6 4.8379 -1.4941 0.0029 7 8 4.7471 -2.7077 0.0032 8 7 6.0521 -0.9091 0.0039 9 6 6.3062 0.5431 0.0032 10 6 7.7212 0.6977 -0.6081 11 6 8.4508 -0.5399 -0.0221 12 1 8.8150 -0.3322 0.9840 13 7 9.5521 -0.9538 -0.8950 14 6 10.7873 -0.3786 -0.7583 15 1 10.9494 0.3804 -0.0073 16 6 11.8310 -0.7711 -1.5850 17 7 11.6333 -1.6957 -2.5006 18 14 13.5158 0.0141 -1.3990 19 1 13.6030 1.2116 -2.2728 20 1 13.7205 0.4175 0.0155 21 1 14.5631 -0.9627 -1.7917 22 6 7.3425 -1.6136 0.0048 23 1 7.4193 -2.2478 -0.8784 24 6 7.4712 -2.4624 1.2712 25 6 2.3408 -1.1291 -0.0046 26 1 -0.3633 0.0004 -1.0277 27 1 -0.3634 -0.8901 0.5135 28 1 -0.3633 0.8898 0.5141 29 1 1.9771 2.1145 0.0004 30 1 6.2884 0.9317 1.0214 31 1 5.5684 1.0569 -0.6129 32 1 8.1917 1.6227 -0.2749 33 1 7.6845 0.6505 -1.6965 34 1 9.4064 -1.6352 -1.5697 35 1 12.3626 -1.9697 -3.0785 36 1 7.3739 -1.8229 2.1486 37 1 6.6859 -3.2180 1.2835 38 1 8.4456 -2.9508 1.2839 39 1 2.0266 -2.1625 -0.0102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986659619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:36 Heat of formation + Delta-G solvation = -26.140580 kcal Electronic energy + Delta-G solvation = -21637.118877 eV Core-core repulsion = 18352.941084 eV Total energy + Delta-G solvation = -3284.177793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.70761 -41.15198 -38.88612 -36.00645 -35.14582 -33.48506 -32.43475 -31.62299 -30.60829 -28.10997 -26.89377 -25.31343 -24.71740 -22.89578 -22.02752 -21.56564 -20.18704 -19.15494 -18.35780 -17.84321 -17.43775 -17.02785 -16.60852 -16.12365 -15.51138 -15.42683 -14.85481 -14.64093 -14.38967 -14.28059 -14.01497 -13.93072 -13.69723 -13.56763 -13.31145 -13.13355 -12.90159 -12.67746 -12.61547 -12.48437 -12.16840 -12.12217 -11.73471 -11.61735 -11.33842 -10.91675 -10.72927 -9.90691 -9.49233 -9.04062 -7.93831 -5.24389 0.01207 1.34690 1.49456 1.51358 1.54553 1.59985 2.03400 2.06253 2.57652 3.34131 3.43761 3.66912 3.75244 3.82870 3.96111 4.06472 4.14073 4.28038 4.33851 4.37456 4.47157 4.61549 4.65315 4.69927 4.86758 4.90084 4.95764 4.99834 5.05721 5.11068 5.17725 5.18594 5.26497 5.40510 5.53586 5.55061 5.89456 6.25992 6.35355 6.86875 7.32746 8.03508 8.27952 9.29701 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038727 B = 0.003632 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.832233 B = 7707.380375 C = 8079.178274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.206 4.206 3 C 0.005 3.995 4 O -0.162 6.162 5 C -0.097 4.097 6 C 0.606 3.394 7 O -0.563 6.563 8 N -0.601 5.601 9 C 0.108 3.892 10 C -0.146 4.146 11 C 0.173 3.827 12 H 0.074 0.926 13 N -0.729 5.729 14 C -0.237 4.237 15 H 0.085 0.915 16 C -0.076 4.076 17 N -0.971 5.971 18 Si 0.974 3.026 19 H -0.287 1.287 20 H -0.266 1.266 21 H -0.300 1.300 22 C 0.132 3.868 23 H 0.051 0.949 24 C -0.145 4.145 25 C -0.123 4.123 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.254 0.746 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.056 0.944 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.848 9.045 7.645 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.207 4.207 3 C -0.065 4.065 4 O -0.058 6.058 5 C -0.149 4.149 6 C 0.397 3.603 7 O -0.445 6.445 8 N -0.332 5.332 9 C -0.014 4.014 10 C -0.187 4.187 11 C 0.063 3.937 12 H 0.092 0.908 13 N -0.368 5.368 14 C -0.368 4.368 15 H 0.102 0.898 16 C -0.268 4.268 17 N -0.622 5.622 18 Si 0.803 3.197 19 H -0.214 1.214 20 H -0.190 1.190 21 H -0.227 1.227 22 C 0.028 3.972 23 H 0.069 0.931 24 C -0.203 4.203 25 C -0.144 4.144 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.270 0.730 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.511 8.657 7.732 24.443 hybrid contribution 1.037 -0.510 -0.650 1.326 sum -20.474 8.148 7.082 23.146 Atomic orbital electron populations 1.20253 0.86416 1.03930 1.03107 1.20839 0.99197 0.91502 1.09199 1.25194 0.78941 1.01749 1.00588 1.84173 1.30496 1.20539 1.70574 1.21573 0.95112 0.81459 1.16709 1.16568 0.80966 0.86000 0.76789 1.90823 1.86183 1.13791 1.53703 1.48488 1.04485 1.09442 1.70804 1.22567 0.97359 0.78972 1.02461 1.23409 0.94222 1.00724 1.00332 1.21420 0.86217 0.91399 0.94662 0.90778 1.42518 1.07023 1.47120 1.40154 1.19620 0.87453 1.15800 1.13957 0.89760 1.25590 1.02036 1.00264 0.98884 1.69839 1.32678 1.35121 1.24557 0.85126 0.79455 0.76999 0.78074 1.21436 1.19048 1.22724 1.21724 0.82411 0.94431 0.98613 0.93057 1.21951 1.02032 0.99811 0.96517 1.22059 0.90638 1.01447 1.00292 0.90589 0.91345 0.89243 0.73035 0.89085 0.88916 0.88809 0.92563 0.79659 0.94096 0.91194 0.92733 0.91673 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.39 71.24 0.74 -0.05 16 2 C -0.21 -3.44 6.14 -20.06 -0.12 -3.56 16 3 C 0.00 0.06 12.00 67.11 0.81 0.87 16 4 O -0.16 -3.53 7.86 -5.05 -0.04 -3.57 16 5 C -0.10 -2.67 6.93 24.07 0.17 -2.51 16 6 C 0.61 20.77 7.61 86.44 0.66 21.43 16 7 O -0.56 -22.74 15.91 -4.32 -0.07 -22.81 16 8 N -0.60 -19.70 3.06 -792.73 -2.43 -22.13 16 9 C 0.11 2.90 6.17 86.86 0.54 3.43 16 10 C -0.15 -4.72 6.77 31.99 0.22 -4.50 16 11 C 0.17 6.62 3.11 46.18 0.14 6.76 16 12 H 0.07 2.74 7.84 -2.39 -0.02 2.72 16 13 N -0.73 -36.00 5.25 -317.34 -1.67 -37.67 16 14 C -0.24 -12.64 9.98 84.03 0.84 -11.81 16 15 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 16 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 17 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 18 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 C 0.13 4.88 3.21 45.34 0.15 5.03 16 23 H 0.05 2.19 7.69 -2.38 -0.02 2.18 16 24 C -0.15 -4.96 9.10 71.98 0.65 -4.31 16 25 C -0.12 -2.95 10.57 22.39 0.24 -2.71 16 26 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.25 0.99 8.06 -2.92 -0.02 0.97 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.09 2.24 6.22 -2.39 -0.01 2.23 16 32 H 0.09 2.73 8.14 -2.39 -0.02 2.72 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.37 20.31 7.51 -92.71 -0.70 19.61 16 35 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.05 1.95 6.90 -2.39 -0.02 1.93 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -69.91 327.03 3.95 -65.96 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.36 Total: 27.73 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 5.49 Total: 4.28 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -3.81 Total: -118.85 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.11 Total: -26.38 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.91 3.95 -65.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986659619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.818 kcal (2) G-P(sol) polarization free energy of solvation -69.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds