Wall clock time and date at job start Tue Mar 31 2020 01:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35134 * 126.43580 * 2 1 4 4 O 1.33936 * 108.76425 * 179.77564 * 3 2 1 5 5 C 1.34915 * 109.38480 * 0.37359 * 4 3 2 6 6 C 1.46655 * 125.99048 * 179.88890 * 5 4 3 7 7 O 1.21690 * 120.00307 * 179.69281 * 6 5 4 8 8 N 1.34781 * 119.99463 * 359.69593 * 6 5 4 9 9 C 1.47419 * 125.65391 * 0.02562 * 8 6 5 10 10 C 1.54900 * 104.83372 * 155.83722 * 9 8 6 11 11 C 1.55156 * 101.58189 * 37.01383 * 10 9 8 12 12 H 1.09001 * 110.72640 * 205.95697 * 11 10 9 13 13 N 1.46507 * 110.72248 * 82.85772 * 11 10 9 14 14 C 1.36938 * 119.99863 * 89.16993 * 13 11 10 15 15 H 1.08001 * 120.00039 * 0.02562 * 14 13 11 16 16 C 1.38803 * 119.99901 * 179.72593 * 14 13 11 17 17 N 1.31623 * 120.00314 * 0.27765 * 16 14 13 18 18 Si 1.86805 * 120.00020 * 180.27403 * 16 14 13 19 19 H 1.48504 * 109.46854 * 90.00136 * 18 16 14 20 20 H 1.48502 * 109.47333 * 210.00022 * 18 16 14 21 21 H 1.48501 * 109.46996 * 330.00455 * 18 16 14 22 22 C 1.47022 * 125.64387 * 179.97438 * 8 6 5 23 23 H 1.08995 * 109.88510 * 300.50835 * 22 8 6 24 24 C 1.53003 * 109.88295 * 61.67507 * 22 8 6 25 25 C 1.36546 * 108.02410 * 359.62723 * 5 4 3 26 26 H 1.09002 * 109.46508 * 269.99924 * 1 2 3 27 27 H 1.08995 * 109.47618 * 29.99815 * 1 2 3 28 28 H 1.09003 * 109.46916 * 150.00538 * 1 2 3 29 29 H 1.07996 * 125.62402 * 359.97377 * 3 2 1 30 30 H 1.09004 * 110.36503 * 36.99963 * 9 8 6 31 31 H 1.08993 * 110.36739 * 274.68141 * 9 8 6 32 32 H 1.09000 * 111.01341 * 278.93746 * 10 9 8 33 33 H 1.09006 * 111.00608 * 155.08385 * 10 9 8 34 34 H 0.96994 * 120.00004 * 269.17117 * 13 11 10 35 35 H 0.97002 * 120.00333 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.47215 * 170.77984 * 24 22 8 37 37 H 1.08994 * 109.47244 * 290.78344 * 24 22 8 38 38 H 1.09001 * 109.47190 * 50.78530 * 24 22 8 39 39 H 1.08002 * 126.64977 * 180.25993 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0872 0.0000 4 8 3.5858 0.6806 0.0050 5 6 3.6261 -0.6679 -0.0001 6 6 4.8380 -1.4939 0.0006 7 8 4.7473 -2.7074 0.0014 8 7 6.0522 -0.9088 0.0006 9 6 6.3063 0.5434 0.0003 10 6 7.7203 0.6986 0.6132 11 6 8.4507 -0.5394 0.0290 12 1 9.2714 -0.8449 0.6780 13 7 8.9382 -0.2627 -1.3246 14 6 10.1843 0.2750 -1.5069 15 1 10.8079 0.4948 -0.6529 16 6 10.6484 0.5319 -2.7896 17 7 9.8887 0.2637 -3.8304 18 14 12.3513 1.2583 -3.0387 19 1 13.3436 0.1609 -3.1673 20 1 12.3621 2.0826 -4.2739 21 1 12.7021 2.1088 -1.8730 22 6 7.3427 -1.6131 0.0017 23 1 7.4184 -2.2466 0.8854 24 6 7.4728 -2.4629 -1.2639 25 6 2.3409 -1.1291 0.0000 26 1 -0.3632 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8901 -0.5138 29 1 1.9770 2.1146 -0.0004 30 1 5.5677 1.0578 0.6152 31 1 6.2895 0.9313 -1.0181 32 1 7.6819 0.6520 1.7016 33 1 8.1913 1.6234 0.2799 34 1 8.3783 -0.4604 -2.0915 35 1 10.2132 0.4428 -4.7268 36 1 8.4889 -2.8506 -1.3384 37 1 6.7693 -3.2940 -1.2175 38 1 7.2532 -1.8493 -2.1377 39 1 2.0267 -2.1624 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986659621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:42 Heat of formation + Delta-G solvation = -1.502732 kcal Electronic energy + Delta-G solvation = -21953.252608 eV Core-core repulsion = 18670.143192 eV Total energy + Delta-G solvation = -3283.109416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.73498 -39.77167 -37.46893 -34.43930 -33.88766 -31.74915 -30.87745 -30.42261 -28.86277 -27.32331 -25.21682 -24.02348 -23.42292 -21.62120 -21.03316 -19.71676 -18.68059 -17.46658 -17.18719 -16.53158 -16.30589 -15.88682 -14.87456 -14.58386 -13.96007 -13.85359 -13.63747 -13.36337 -13.29638 -13.13746 -12.76265 -12.71492 -12.64836 -12.26546 -11.86995 -11.75396 -11.25239 -11.00508 -10.95758 -10.74164 -10.63733 -10.27618 -10.09664 -9.86648 -9.78041 -9.63355 -8.96710 -8.72120 -8.30867 -7.03866 -5.82468 -3.12380 1.10096 2.23438 2.69016 3.25971 3.34438 3.40375 3.45845 3.47418 4.51005 4.53978 4.65882 4.82208 5.07403 5.10874 5.30027 5.39445 5.45863 5.51072 5.58551 5.61903 5.65933 5.76325 5.80329 5.81485 5.92020 6.03473 6.17216 6.31166 6.35072 6.40964 6.52098 6.60237 6.69089 6.80503 6.92415 6.98417 7.65436 7.71796 8.24237 8.35521 9.47270 10.02259 10.37574 11.39664 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029124 B = 0.004130 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.186301 B = 6778.018673 C = 7092.747859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.196 4.196 3 C -0.018 4.018 4 O -0.154 6.154 5 C -0.060 4.060 6 C 0.610 3.390 7 O -0.528 6.528 8 N -0.596 5.596 9 C 0.105 3.895 10 C -0.159 4.159 11 C 0.172 3.828 12 H 0.071 0.929 13 N -0.714 5.714 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.930 5.930 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.127 3.873 23 H 0.075 0.925 24 C -0.149 4.149 25 C -0.127 4.127 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.206 0.794 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.388 0.612 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.648 1.525 9.304 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.197 4.197 3 C -0.088 4.088 4 O -0.049 6.049 5 C -0.112 4.112 6 C 0.398 3.602 7 O -0.408 6.408 8 N -0.328 5.328 9 C -0.017 4.017 10 C -0.201 4.201 11 C 0.060 3.940 12 H 0.089 0.911 13 N -0.356 5.356 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.023 3.977 23 H 0.093 0.907 24 C -0.207 4.207 25 C -0.148 4.148 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.223 0.777 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.225 0.775 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.277 1.096 9.276 17.906 hybrid contribution 0.498 0.515 -0.533 0.893 sum -14.779 1.611 8.743 17.247 Atomic orbital electron populations 1.20160 0.88816 1.02745 1.02125 1.20450 0.97550 0.92472 1.09261 1.24210 0.80437 0.99969 1.04179 1.84234 1.28733 1.21808 1.70161 1.22149 0.96088 0.80505 1.12434 1.16189 0.80337 0.85980 0.77741 1.90845 1.85574 1.12074 1.52270 1.48566 1.05061 1.08826 1.70383 1.22423 0.97808 0.79775 1.01721 1.23534 0.94800 1.02888 0.98848 1.21221 0.92678 0.90643 0.89467 0.91105 1.42544 1.17242 1.74935 1.00889 1.19234 0.92116 1.34008 0.92179 0.90991 1.24749 0.98399 1.01947 0.95498 1.69665 1.36668 1.53723 0.97705 0.86192 0.84165 0.78612 0.77182 1.21695 1.21825 1.20726 1.22071 0.81858 0.94674 0.99055 0.90726 1.21922 1.02382 0.99343 0.97027 1.21779 0.90519 1.00424 1.02088 0.91433 0.91553 0.91378 0.77718 0.90897 0.90848 0.92019 0.89253 0.77538 0.93411 0.90866 0.92745 0.91865 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.39 36.01 0.37 -0.23 16 2 C -0.20 -2.11 6.14 -104.93 -0.64 -2.76 16 3 C -0.02 -0.19 12.00 29.63 0.36 0.17 16 4 O -0.15 -2.11 7.85 4.98 0.04 -2.07 16 5 C -0.06 -0.91 6.93 -36.80 -0.25 -1.17 16 6 C 0.61 10.83 7.61 -12.86 -0.10 10.73 16 7 O -0.53 -10.50 16.04 5.20 0.08 -10.42 16 8 N -0.60 -10.36 3.06 -164.56 -0.50 -10.87 16 9 C 0.10 1.70 6.15 -2.54 -0.02 1.69 16 10 C -0.16 -2.64 6.77 -24.59 -0.17 -2.80 16 11 C 0.17 3.27 3.47 -66.09 -0.23 3.04 16 12 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 13 N -0.71 -16.91 4.59 -51.65 -0.24 -17.15 16 14 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 17 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 18 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.13 2.27 3.43 -66.95 -0.23 2.04 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 C -0.15 -2.85 8.13 37.16 0.30 -2.55 16 25 C -0.13 -1.70 10.57 -39.39 -0.42 -2.12 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.21 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.07 1.05 6.21 -51.93 -0.32 0.73 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.39 9.95 5.75 -40.82 -0.23 9.72 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.07 1.43 8.12 -51.93 -0.42 1.01 16 37 H 0.05 1.03 7.14 -51.93 -0.37 0.66 16 38 H 0.06 1.34 6.64 -51.93 -0.34 0.99 16 39 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -30.82 323.76 -6.77 -37.60 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.47 Total: 8.80 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.27 Total: -0.90 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.02 Total: -54.62 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.12 Total: -12.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.82 -6.77 -37.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986659621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.094 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds