Wall clock time and date at job start Tue Mar 31 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35134 * 126.43580 * 2 1 4 4 O 1.33936 * 108.76425 * 179.77564 * 3 2 1 5 5 C 1.34915 * 109.38480 * 0.37359 * 4 3 2 6 6 C 1.46655 * 125.99048 * 179.88890 * 5 4 3 7 7 O 1.21690 * 120.00307 * 179.69281 * 6 5 4 8 8 N 1.34781 * 119.99463 * 359.69593 * 6 5 4 9 9 C 1.47419 * 125.65391 * 0.02562 * 8 6 5 10 10 C 1.54900 * 104.83372 * 155.83722 * 9 8 6 11 11 C 1.55156 * 101.58189 * 37.01383 * 10 9 8 12 12 H 1.09001 * 110.72640 * 205.95697 * 11 10 9 13 13 N 1.46507 * 110.72248 * 82.85772 * 11 10 9 14 14 C 1.36938 * 119.99863 * 89.16993 * 13 11 10 15 15 H 1.08001 * 120.00039 * 0.02562 * 14 13 11 16 16 C 1.38803 * 119.99901 * 179.72593 * 14 13 11 17 17 N 1.31623 * 120.00314 * 0.27765 * 16 14 13 18 18 Si 1.86805 * 120.00020 * 180.27403 * 16 14 13 19 19 H 1.48504 * 109.46854 * 90.00136 * 18 16 14 20 20 H 1.48502 * 109.47333 * 210.00022 * 18 16 14 21 21 H 1.48501 * 109.46996 * 330.00455 * 18 16 14 22 22 C 1.47022 * 125.64387 * 179.97438 * 8 6 5 23 23 H 1.08995 * 109.88510 * 300.50835 * 22 8 6 24 24 C 1.53003 * 109.88295 * 61.67507 * 22 8 6 25 25 C 1.36546 * 108.02410 * 359.62723 * 5 4 3 26 26 H 1.09002 * 109.46508 * 269.99924 * 1 2 3 27 27 H 1.08995 * 109.47618 * 29.99815 * 1 2 3 28 28 H 1.09003 * 109.46916 * 150.00538 * 1 2 3 29 29 H 1.07996 * 125.62402 * 359.97377 * 3 2 1 30 30 H 1.09004 * 110.36503 * 36.99963 * 9 8 6 31 31 H 1.08993 * 110.36739 * 274.68141 * 9 8 6 32 32 H 1.09000 * 111.01341 * 278.93746 * 10 9 8 33 33 H 1.09006 * 111.00608 * 155.08385 * 10 9 8 34 34 H 0.96994 * 120.00004 * 269.17117 * 13 11 10 35 35 H 0.97002 * 120.00333 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.47215 * 170.77984 * 24 22 8 37 37 H 1.08994 * 109.47244 * 290.78344 * 24 22 8 38 38 H 1.09001 * 109.47190 * 50.78530 * 24 22 8 39 39 H 1.08002 * 126.64977 * 180.25993 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0872 0.0000 4 8 3.5858 0.6806 0.0050 5 6 3.6261 -0.6679 -0.0001 6 6 4.8380 -1.4939 0.0006 7 8 4.7473 -2.7074 0.0014 8 7 6.0522 -0.9088 0.0006 9 6 6.3063 0.5434 0.0003 10 6 7.7203 0.6986 0.6132 11 6 8.4507 -0.5394 0.0290 12 1 9.2714 -0.8449 0.6780 13 7 8.9382 -0.2627 -1.3246 14 6 10.1843 0.2750 -1.5069 15 1 10.8079 0.4948 -0.6529 16 6 10.6484 0.5319 -2.7896 17 7 9.8887 0.2637 -3.8304 18 14 12.3513 1.2583 -3.0387 19 1 13.3436 0.1609 -3.1673 20 1 12.3621 2.0826 -4.2739 21 1 12.7021 2.1088 -1.8730 22 6 7.3427 -1.6131 0.0017 23 1 7.4184 -2.2466 0.8854 24 6 7.4728 -2.4629 -1.2639 25 6 2.3409 -1.1291 0.0000 26 1 -0.3632 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8901 -0.5138 29 1 1.9770 2.1146 -0.0004 30 1 5.5677 1.0578 0.6152 31 1 6.2895 0.9313 -1.0181 32 1 7.6819 0.6520 1.7016 33 1 8.1913 1.6234 0.2799 34 1 8.3783 -0.4604 -2.0915 35 1 10.2132 0.4428 -4.7268 36 1 8.4889 -2.8506 -1.3384 37 1 6.7693 -3.2940 -1.2175 38 1 7.2532 -1.8493 -2.1377 39 1 2.0267 -2.1624 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986659621.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:41 Heat of formation + Delta-G solvation = -20.651498 kcal Electronic energy + Delta-G solvation = -21954.082961 eV Core-core repulsion = 18670.143192 eV Total energy + Delta-G solvation = -3283.939769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.70944 -41.17681 -38.93604 -35.85115 -35.13285 -33.45338 -32.35647 -31.60233 -30.44423 -28.10536 -26.80618 -25.62077 -24.97182 -22.88378 -22.02551 -21.10813 -19.95937 -19.36401 -18.34322 -17.82745 -17.42820 -17.17989 -16.36746 -16.15851 -15.71424 -15.38166 -14.81353 -14.53305 -14.32655 -14.26597 -13.97939 -13.93002 -13.85785 -13.55534 -13.29965 -12.97117 -12.88354 -12.62731 -12.51544 -12.36541 -12.26115 -12.06499 -11.70697 -11.49243 -11.29918 -10.92255 -10.72818 -9.88222 -9.48672 -9.00240 -7.91293 -5.20164 0.01708 1.34324 1.50814 1.51725 1.58560 1.59979 2.04291 2.10972 2.58450 3.35223 3.45837 3.69802 3.82743 3.84915 3.91540 4.05457 4.22960 4.25130 4.31702 4.38166 4.52143 4.63773 4.71278 4.77841 4.89061 4.89895 4.95729 5.03665 5.06062 5.10732 5.16408 5.28723 5.31769 5.39163 5.53983 5.57614 5.90250 6.29470 6.36910 6.89275 7.36920 8.09690 8.33936 9.32064 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029124 B = 0.004130 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.186301 B = 6778.018673 C = 7092.747859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.204 4.204 3 C -0.001 4.001 4 O -0.166 6.166 5 C -0.099 4.099 6 C 0.606 3.394 7 O -0.561 6.561 8 N -0.599 5.599 9 C 0.113 3.887 10 C -0.146 4.146 11 C 0.164 3.836 12 H 0.081 0.919 13 N -0.725 5.725 14 C -0.235 4.235 15 H 0.083 0.917 16 C -0.074 4.074 17 N -0.970 5.970 18 Si 0.971 3.029 19 H -0.291 1.291 20 H -0.301 1.301 21 H -0.266 1.266 22 C 0.130 3.870 23 H 0.091 0.909 24 C -0.135 4.135 25 C -0.123 4.123 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.251 0.749 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.375 0.625 35 H 0.249 0.751 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.036 0.964 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.907 3.054 11.144 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.205 4.205 3 C -0.070 4.070 4 O -0.062 6.062 5 C -0.151 4.151 6 C 0.396 3.604 7 O -0.443 6.443 8 N -0.330 5.330 9 C -0.009 4.009 10 C -0.186 4.186 11 C 0.054 3.946 12 H 0.099 0.901 13 N -0.366 5.366 14 C -0.367 4.367 15 H 0.101 0.899 16 C -0.266 4.266 17 N -0.621 5.621 18 Si 0.801 3.199 19 H -0.219 1.219 20 H -0.228 1.228 21 H -0.191 1.191 22 C 0.027 3.973 23 H 0.108 0.892 24 C -0.194 4.194 25 C -0.144 4.144 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.267 0.733 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.540 2.636 11.182 20.138 hybrid contribution 0.736 0.039 -1.035 1.271 sum -15.804 2.675 10.147 18.970 Atomic orbital electron populations 1.20254 0.86278 1.03845 1.03248 1.20844 0.99238 0.91431 1.09035 1.25177 0.79028 1.01808 1.00964 1.84189 1.30565 1.20837 1.70565 1.21713 0.95470 0.81383 1.16491 1.16526 0.80980 0.86010 0.76853 1.90807 1.86194 1.13450 1.53812 1.48581 1.04840 1.09117 1.70500 1.22363 0.98390 0.79278 1.00881 1.23394 0.94030 1.00676 1.00547 1.21444 0.93458 0.92170 0.87483 0.90143 1.42679 1.16547 1.74988 1.02414 1.19646 0.92835 1.31879 0.92303 0.89912 1.25509 1.01887 1.03673 0.95527 1.69833 1.38437 1.56109 0.97746 0.85176 0.80089 0.77709 0.76967 1.21875 1.22810 1.19086 1.21968 0.82216 0.94393 0.98736 0.89156 1.21757 1.01690 0.99034 0.96879 1.22057 0.90495 1.01455 1.00386 0.90220 0.89492 0.91325 0.73313 0.88554 0.93109 0.88844 0.90308 0.79035 0.94253 0.91665 0.92832 0.94456 0.82451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.39 71.24 0.74 -0.18 16 2 C -0.20 -3.85 6.14 -20.06 -0.12 -3.97 16 3 C 0.00 -0.01 12.00 67.10 0.81 0.80 16 4 O -0.17 -4.22 7.85 -5.10 -0.04 -4.26 16 5 C -0.10 -2.97 6.93 24.07 0.17 -2.81 16 6 C 0.61 21.67 7.61 86.44 0.66 22.33 16 7 O -0.56 -22.74 16.04 -4.32 -0.07 -22.81 16 8 N -0.60 -20.69 3.06 -792.78 -2.43 -23.12 16 9 C 0.11 3.56 6.15 86.85 0.53 4.10 16 10 C -0.15 -4.57 6.77 31.98 0.22 -4.35 16 11 C 0.16 6.12 3.47 46.18 0.16 6.29 16 12 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 13 N -0.73 -34.68 4.59 -317.32 -1.46 -36.14 16 14 C -0.23 -12.34 9.97 84.03 0.84 -11.50 16 15 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 16 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 17 N -0.97 -58.60 13.06 21.65 0.28 -58.31 16 18 Si 0.97 45.06 29.55 68.60 2.03 47.08 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 C 0.13 4.65 3.43 45.34 0.16 4.81 16 23 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 24 C -0.14 -5.37 8.13 71.98 0.59 -4.79 16 25 C -0.12 -3.16 10.57 22.39 0.24 -2.92 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.25 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.10 2.60 6.21 -2.39 -0.01 2.59 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.38 19.89 5.75 -92.71 -0.53 19.35 16 35 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.06 2.64 8.12 -2.39 -0.02 2.62 16 37 H 0.05 2.09 7.14 -2.39 -0.02 2.08 16 38 H 0.04 1.65 6.64 -2.39 -0.02 1.63 16 39 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -68.11 323.76 4.28 -63.83 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.52 Total: 29.57 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.44 Total: 4.16 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -3.60 Total: -117.57 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.11 Total: -27.07 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.11 4.28 -63.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986659621.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.179 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds