Wall clock time and date at job start Tue Mar 31 2020 01:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35130 * 126.44456 * 2 1 4 4 O 1.33936 * 108.76939 * 179.73163 * 3 2 1 5 5 C 1.34917 * 109.38077 * 0.26810 * 4 3 2 6 6 C 1.46659 * 125.98260 * 179.97438 * 5 4 3 7 7 O 1.21695 * 119.99796 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00059 * 0.02562 * 6 5 4 9 9 C 1.47421 * 125.65325 * 359.68909 * 8 6 5 10 10 C 1.55124 * 104.72371 * 155.81659 * 9 8 6 11 11 C 1.55151 * 101.48651 * 37.29910 * 10 9 8 12 12 H 1.09011 * 110.71766 * 82.69676 * 11 10 9 13 13 N 1.46501 * 110.87411 * 205.89550 * 11 10 9 14 14 C 1.36942 * 119.99913 * 268.60990 * 13 11 10 15 15 H 1.07998 * 120.00335 * 0.02562 * 14 13 11 16 16 C 1.38815 * 119.99367 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00753 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99471 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47222 * 60.00010 * 18 16 14 20 20 H 1.48492 * 109.46850 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46667 * 300.00033 * 18 16 14 22 22 C 1.47026 * 125.64541 * 180.02562 * 8 6 5 23 23 H 1.09004 * 109.87858 * 300.43439 * 22 8 6 24 24 C 1.52996 * 109.88601 * 61.44869 * 22 8 6 25 25 C 1.36538 * 108.02582 * 359.97438 * 5 4 3 26 26 H 1.09007 * 109.47121 * 90.02308 * 1 2 3 27 27 H 1.09001 * 109.47186 * 210.02176 * 1 2 3 28 28 H 1.08999 * 109.47236 * 330.02444 * 1 2 3 29 29 H 1.08002 * 125.61768 * 0.02562 * 3 2 1 30 30 H 1.08997 * 110.37239 * 274.75121 * 9 8 6 31 31 H 1.09003 * 110.36106 * 37.07237 * 9 8 6 32 32 H 1.08995 * 111.19553 * 279.19412 * 10 9 8 33 33 H 1.09001 * 110.93928 * 155.29220 * 10 9 8 34 34 H 0.96997 * 120.00163 * 88.61560 * 13 11 10 35 35 H 0.96993 * 120.00052 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.46942 * 58.54668 * 24 22 8 37 37 H 1.09002 * 109.47123 * 178.54520 * 24 22 8 38 38 H 1.09001 * 109.47336 * 298.54583 * 24 22 8 39 39 H 1.08001 * 126.64251 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3096 1.0870 0.0000 4 8 3.5858 0.6804 0.0059 5 6 3.6259 -0.6682 0.0039 6 6 4.8378 -1.4942 0.0083 7 8 4.7470 -2.7077 0.0053 8 7 6.0520 -0.9092 0.0155 9 6 6.3062 0.5429 0.0132 10 6 7.7178 0.6970 0.6378 11 6 8.4504 -0.5401 0.0545 12 1 8.8174 -0.3324 -0.9507 13 7 9.5491 -0.9566 0.9295 14 6 10.8088 -0.4571 0.7319 15 1 10.9922 0.2442 -0.0686 16 6 11.8497 -0.8515 1.5614 17 7 11.6261 -1.7057 2.5374 18 14 13.5679 -0.1695 1.2923 19 1 13.5407 1.3089 1.4289 20 1 14.4918 -0.7426 2.3038 21 1 14.0368 -0.5324 -0.0692 22 6 7.3424 -1.6137 0.0200 23 1 7.4147 -2.2493 0.9026 24 6 7.4758 -2.4636 -1.2452 25 6 2.3408 -1.1292 -0.0030 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 1.9770 2.1145 0.0004 30 1 6.2958 0.9283 -1.0063 31 1 5.5640 1.0588 0.6224 32 1 7.6747 0.6485 1.7258 33 1 8.1906 1.6223 0.3085 34 1 9.3844 -1.5862 1.6487 35 1 12.3536 -1.9815 3.1167 36 1 7.3948 -1.8229 -2.1234 37 1 8.4450 -2.9623 -1.2474 38 1 6.6825 -3.2109 -1.2663 39 1 2.0266 -2.1625 -0.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986659623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:45 Heat of formation + Delta-G solvation = -6.165542 kcal Electronic energy + Delta-G solvation = -21632.502395 eV Core-core repulsion = 18349.190784 eV Total energy + Delta-G solvation = -3283.311611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.81921 -39.79656 -37.44438 -34.52092 -34.03737 -31.81154 -30.98809 -30.48022 -29.10474 -27.41402 -25.21534 -24.06481 -23.01320 -21.68409 -21.11543 -20.09702 -18.99925 -17.32564 -17.26180 -16.62108 -16.41557 -15.80708 -15.02222 -14.63572 -13.99630 -13.82370 -13.60164 -13.43766 -13.38637 -13.20970 -12.90359 -12.82989 -12.75830 -12.15576 -11.93253 -11.87680 -11.55933 -11.17389 -11.04554 -10.83453 -10.60486 -10.27828 -10.14647 -9.95354 -9.85755 -9.72934 -8.95745 -8.80227 -8.40614 -7.05329 -5.82698 -3.13452 1.01703 2.15749 2.59745 3.16302 3.24725 3.40964 3.45715 3.46736 4.42330 4.53672 4.58545 4.74787 5.00262 5.05569 5.24733 5.33773 5.36126 5.44571 5.49883 5.55807 5.62209 5.65480 5.74185 5.75761 5.84431 5.98180 6.06898 6.13303 6.23510 6.29836 6.43859 6.57078 6.57971 6.64304 6.82435 6.89931 7.62364 7.64308 8.16049 8.34473 9.45926 9.99881 10.34809 11.39354 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039637 B = 0.003614 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.242802 B = 7745.209941 C = 8097.565710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.195 4.195 3 C -0.019 4.019 4 O -0.156 6.156 5 C -0.060 4.060 6 C 0.610 3.390 7 O -0.525 6.525 8 N -0.598 5.598 9 C 0.098 3.902 10 C -0.156 4.156 11 C 0.177 3.823 12 H 0.069 0.931 13 N -0.713 5.713 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.125 3.875 23 H 0.081 0.919 24 C -0.155 4.155 25 C -0.126 4.126 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.207 0.793 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.970 6.329 -6.248 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.196 4.196 3 C -0.088 4.088 4 O -0.051 6.051 5 C -0.113 4.113 6 C 0.397 3.603 7 O -0.404 6.404 8 N -0.330 5.330 9 C -0.025 4.025 10 C -0.197 4.197 11 C 0.065 3.935 12 H 0.087 0.913 13 N -0.353 5.353 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.206 4.206 17 N -0.577 5.577 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.022 3.978 23 H 0.099 0.901 24 C -0.213 4.213 25 C -0.147 4.147 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.223 0.777 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -19.586 5.880 -6.280 21.392 hybrid contribution 0.666 0.274 0.192 0.745 sum -18.919 6.154 -6.087 20.806 Atomic orbital electron populations 1.20166 0.88773 1.02767 1.02203 1.20462 0.97592 0.92467 1.09114 1.24208 0.80414 0.99966 1.04260 1.84219 1.28769 1.21809 1.70306 1.22148 0.96076 0.80471 1.12573 1.16212 0.80280 0.86017 0.77749 1.90861 1.85488 1.12069 1.51939 1.48468 1.05155 1.08709 1.70654 1.22554 0.98799 0.80182 1.00962 1.23625 0.92952 1.01660 1.01453 1.21243 0.87066 0.89995 0.95189 0.91327 1.42339 1.04215 1.53410 1.35386 1.19171 0.85229 1.21051 1.12205 0.90996 1.24771 0.98210 0.99569 0.98027 1.69652 1.31882 1.35980 1.20208 0.86248 0.84227 0.78359 0.77201 1.21196 1.21671 1.21163 1.22055 0.81516 0.94958 0.99272 0.90114 1.22054 1.02863 0.99961 0.96431 1.21800 0.90515 1.00493 1.01876 0.91375 0.91336 0.91539 0.77684 0.91501 0.90485 0.90591 0.90404 0.77948 0.93283 0.93015 0.90854 0.91925 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.00 0.37 -0.18 16 2 C -0.20 -1.93 6.14 -104.93 -0.64 -2.57 16 3 C -0.02 -0.17 12.00 29.63 0.36 0.18 16 4 O -0.16 -1.92 7.85 4.97 0.04 -1.88 16 5 C -0.06 -0.86 6.93 -36.80 -0.26 -1.12 16 6 C 0.61 10.36 7.61 -12.86 -0.10 10.26 16 7 O -0.52 -10.22 15.89 5.19 0.08 -10.14 16 8 N -0.60 -9.88 3.06 -164.42 -0.50 -10.39 16 9 C 0.10 1.41 6.18 -2.41 -0.01 1.39 16 10 C -0.16 -2.60 6.79 -24.47 -0.17 -2.76 16 11 C 0.18 3.41 3.13 -66.10 -0.21 3.20 16 12 H 0.07 1.31 7.80 -51.92 -0.41 0.91 16 13 N -0.71 -17.30 5.23 -51.65 -0.27 -17.57 16 14 C -0.25 -6.57 9.96 -15.06 -0.15 -6.72 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 18 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.13 2.27 3.20 -66.95 -0.21 2.06 16 23 H 0.08 1.63 7.72 -51.93 -0.40 1.23 16 24 C -0.15 -2.63 9.11 37.16 0.34 -2.29 16 25 C -0.13 -1.58 10.57 -39.39 -0.42 -1.99 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.03 6.20 -51.93 -0.32 0.70 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.39 10.11 7.56 -40.82 -0.31 9.80 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.09 6.87 -51.93 -0.36 0.74 16 39 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -31.26 327.04 -6.78 -38.05 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.57 Total: 7.91 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.19 Total: -0.89 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.05 Total: -54.82 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.12 Total: -12.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.26 -6.78 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986659623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.882 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds