Wall clock time and date at job start Tue Mar 31 2020 01:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35130 * 126.44456 * 2 1 4 4 O 1.33936 * 108.76939 * 179.73163 * 3 2 1 5 5 C 1.34917 * 109.38077 * 0.26810 * 4 3 2 6 6 C 1.46659 * 125.98260 * 179.97438 * 5 4 3 7 7 O 1.21695 * 119.99796 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00059 * 0.02562 * 6 5 4 9 9 C 1.47421 * 125.65325 * 359.68909 * 8 6 5 10 10 C 1.55124 * 104.72371 * 155.81659 * 9 8 6 11 11 C 1.55151 * 101.48651 * 37.29910 * 10 9 8 12 12 H 1.09011 * 110.71766 * 82.69676 * 11 10 9 13 13 N 1.46501 * 110.87411 * 205.89550 * 11 10 9 14 14 C 1.36942 * 119.99913 * 268.60990 * 13 11 10 15 15 H 1.07998 * 120.00335 * 0.02562 * 14 13 11 16 16 C 1.38815 * 119.99367 * 179.97438 * 14 13 11 17 17 N 1.31617 * 120.00753 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99471 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47222 * 60.00010 * 18 16 14 20 20 H 1.48492 * 109.46850 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46667 * 300.00033 * 18 16 14 22 22 C 1.47026 * 125.64541 * 180.02562 * 8 6 5 23 23 H 1.09004 * 109.87858 * 300.43439 * 22 8 6 24 24 C 1.52996 * 109.88601 * 61.44869 * 22 8 6 25 25 C 1.36538 * 108.02582 * 359.97438 * 5 4 3 26 26 H 1.09007 * 109.47121 * 90.02308 * 1 2 3 27 27 H 1.09001 * 109.47186 * 210.02176 * 1 2 3 28 28 H 1.08999 * 109.47236 * 330.02444 * 1 2 3 29 29 H 1.08002 * 125.61768 * 0.02562 * 3 2 1 30 30 H 1.08997 * 110.37239 * 274.75121 * 9 8 6 31 31 H 1.09003 * 110.36106 * 37.07237 * 9 8 6 32 32 H 1.08995 * 111.19553 * 279.19412 * 10 9 8 33 33 H 1.09001 * 110.93928 * 155.29220 * 10 9 8 34 34 H 0.96997 * 120.00163 * 88.61560 * 13 11 10 35 35 H 0.96993 * 120.00052 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.46942 * 58.54668 * 24 22 8 37 37 H 1.09002 * 109.47123 * 178.54520 * 24 22 8 38 38 H 1.09001 * 109.47336 * 298.54583 * 24 22 8 39 39 H 1.08001 * 126.64251 * 180.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3096 1.0870 0.0000 4 8 3.5858 0.6804 0.0059 5 6 3.6259 -0.6682 0.0039 6 6 4.8378 -1.4942 0.0083 7 8 4.7470 -2.7077 0.0053 8 7 6.0520 -0.9092 0.0155 9 6 6.3062 0.5429 0.0132 10 6 7.7178 0.6970 0.6378 11 6 8.4504 -0.5401 0.0545 12 1 8.8174 -0.3324 -0.9507 13 7 9.5491 -0.9566 0.9295 14 6 10.8088 -0.4571 0.7319 15 1 10.9922 0.2442 -0.0686 16 6 11.8497 -0.8515 1.5614 17 7 11.6261 -1.7057 2.5374 18 14 13.5679 -0.1695 1.2923 19 1 13.5407 1.3089 1.4289 20 1 14.4918 -0.7426 2.3038 21 1 14.0368 -0.5324 -0.0692 22 6 7.3424 -1.6137 0.0200 23 1 7.4147 -2.2493 0.9026 24 6 7.4758 -2.4636 -1.2452 25 6 2.3408 -1.1292 -0.0030 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5134 29 1 1.9770 2.1145 0.0004 30 1 6.2958 0.9283 -1.0063 31 1 5.5640 1.0588 0.6224 32 1 7.6747 0.6485 1.7258 33 1 8.1906 1.6223 0.3085 34 1 9.3844 -1.5862 1.6487 35 1 12.3536 -1.9815 3.1167 36 1 7.3948 -1.8229 -2.1234 37 1 8.4450 -2.9623 -1.2474 38 1 6.6825 -3.2109 -1.2663 39 1 2.0266 -2.1625 -0.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986659623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:45 Heat of formation + Delta-G solvation = -26.196633 kcal Electronic energy + Delta-G solvation = -21633.371008 eV Core-core repulsion = 18349.190784 eV Total energy + Delta-G solvation = -3284.180224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.70629 -41.14523 -38.87650 -36.00566 -35.14604 -33.48316 -32.42290 -31.62080 -30.61003 -28.10919 -26.89099 -25.31247 -24.70555 -22.89675 -22.02688 -21.57283 -20.17378 -19.17613 -18.35741 -17.83951 -17.43317 -17.02493 -16.60774 -16.11680 -15.50891 -15.42406 -14.86771 -14.62792 -14.38829 -14.27717 -14.00830 -13.93000 -13.65299 -13.56641 -13.31239 -13.12981 -12.89281 -12.65038 -12.61233 -12.48799 -12.22146 -12.13600 -11.74231 -11.61416 -11.33987 -10.90545 -10.72844 -9.90481 -9.49063 -9.04380 -7.93775 -5.24388 0.01322 1.34716 1.49517 1.52638 1.54902 1.58998 2.03792 2.06327 2.57789 3.34024 3.44354 3.66571 3.75868 3.82928 3.96742 4.06618 4.14565 4.28528 4.33838 4.37944 4.46936 4.61776 4.65300 4.69889 4.86372 4.90301 4.95859 5.00186 5.05728 5.11068 5.18114 5.18709 5.26817 5.39906 5.53397 5.54762 5.89520 6.25825 6.35845 6.87194 7.32606 8.03401 8.27922 9.29507 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039637 B = 0.003614 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.242802 B = 7745.209941 C = 8097.565710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.206 4.206 3 C 0.004 3.996 4 O -0.162 6.162 5 C -0.097 4.097 6 C 0.606 3.394 7 O -0.564 6.564 8 N -0.601 5.601 9 C 0.108 3.892 10 C -0.146 4.146 11 C 0.173 3.827 12 H 0.077 0.923 13 N -0.728 5.728 14 C -0.240 4.240 15 H 0.084 0.916 16 C -0.075 4.075 17 N -0.971 5.971 18 Si 0.975 3.025 19 H -0.275 1.275 20 H -0.300 1.300 21 H -0.277 1.277 22 C 0.131 3.869 23 H 0.050 0.950 24 C -0.145 4.145 25 C -0.124 4.124 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.254 0.746 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.371 0.629 35 H 0.251 0.749 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.764 9.147 -7.619 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.207 4.207 3 C -0.065 4.065 4 O -0.058 6.058 5 C -0.148 4.148 6 C 0.396 3.604 7 O -0.445 6.445 8 N -0.332 5.332 9 C -0.014 4.014 10 C -0.187 4.187 11 C 0.063 3.937 12 H 0.095 0.905 13 N -0.366 5.366 14 C -0.371 4.371 15 H 0.102 0.898 16 C -0.267 4.267 17 N -0.622 5.622 18 Si 0.804 3.196 19 H -0.201 1.201 20 H -0.227 1.227 21 H -0.203 1.203 22 C 0.026 3.974 23 H 0.069 0.931 24 C -0.203 4.203 25 C -0.145 4.145 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.270 0.730 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.203 0.797 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.417 8.748 -7.697 24.382 hybrid contribution 1.032 -0.549 0.585 1.307 sum -20.386 8.199 -7.111 23.095 Atomic orbital electron populations 1.20252 0.86420 1.03852 1.03184 1.20836 0.99196 0.91503 1.09200 1.25194 0.78944 1.01748 1.00591 1.84176 1.30492 1.20532 1.70578 1.21578 0.95115 0.81461 1.16690 1.16572 0.80981 0.86002 0.76803 1.90824 1.86191 1.13807 1.53727 1.48486 1.04492 1.09470 1.70761 1.22610 0.97398 0.78961 1.02404 1.23443 0.94251 1.00707 1.00294 1.21417 0.86251 0.91300 0.94727 0.90548 1.42502 1.04977 1.53358 1.35810 1.19606 0.86059 1.19954 1.11483 0.89767 1.25593 1.02072 1.00644 0.98387 1.69826 1.32521 1.38159 1.21655 0.85195 0.79563 0.77967 0.76914 1.20090 1.22690 1.20305 1.21786 0.82469 0.94549 0.98556 0.93146 1.21947 1.01966 0.99811 0.96575 1.22057 0.90644 1.01440 1.00309 0.90380 0.91454 0.89343 0.73030 0.89080 0.88888 0.92497 0.88799 0.79660 0.94069 0.91215 0.91757 0.92759 0.82748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.39 71.23 0.74 -0.06 16 2 C -0.21 -3.44 6.14 -20.06 -0.12 -3.57 16 3 C 0.00 0.06 12.00 67.10 0.81 0.87 16 4 O -0.16 -3.53 7.85 -5.12 -0.04 -3.57 16 5 C -0.10 -2.67 6.93 24.07 0.17 -2.51 16 6 C 0.61 20.80 7.61 86.44 0.66 21.46 16 7 O -0.56 -22.83 15.89 -4.33 -0.07 -22.89 16 8 N -0.60 -19.72 3.06 -792.31 -2.43 -22.15 16 9 C 0.11 2.89 6.18 86.93 0.54 3.42 16 10 C -0.15 -4.70 6.79 32.06 0.22 -4.48 16 11 C 0.17 6.63 3.13 46.18 0.14 6.77 16 12 H 0.08 2.82 7.80 -2.38 -0.02 2.80 16 13 N -0.73 -35.95 5.23 -317.32 -1.66 -37.61 16 14 C -0.24 -12.80 9.96 84.03 0.84 -11.96 16 15 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 16 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 17 N -0.97 -59.30 13.06 21.65 0.28 -59.02 16 18 Si 0.97 45.21 29.55 68.60 2.03 47.23 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 C 0.13 4.84 3.20 45.34 0.15 4.98 16 23 H 0.05 2.17 7.72 -2.39 -0.02 2.15 16 24 C -0.14 -5.00 9.11 71.98 0.66 -4.34 16 25 C -0.12 -2.95 10.57 22.39 0.24 -2.72 16 26 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.25 0.99 8.06 -2.91 -0.02 0.96 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.09 2.24 6.20 -2.39 -0.01 2.22 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.37 20.31 7.56 -92.71 -0.70 19.61 16 35 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.05 1.95 6.87 -2.39 -0.02 1.94 16 39 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -69.87 327.04 3.96 -65.92 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.36 Total: 27.96 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.49 Total: 4.13 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -3.81 Total: -118.77 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.11 Total: -26.46 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -69.87 3.96 -65.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986659623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.722 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds