Wall clock time and date at job start Tue Mar 31 2020 00:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35139 * 125.61450 * 2 1 4 4 C 1.40360 * 107.11532 * 180.19147 * 3 2 1 5 5 C 1.36548 * 106.70846 * 359.57258 * 4 3 2 6 6 C 1.46650 * 125.99044 * 180.28893 * 5 4 3 7 7 O 1.21693 * 120.00274 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00431 * 180.02562 * 6 5 4 9 9 C 1.47432 * 125.64352 * 359.68747 * 8 6 5 10 10 C 1.55127 * 104.71955 * 155.81809 * 9 8 6 11 11 H 1.08997 * 111.22601 * 279.17308 * 10 9 8 12 12 N 1.46506 * 110.90365 * 155.27558 * 10 9 8 13 13 C 1.36932 * 120.00085 * 92.97734 * 12 10 9 14 14 H 1.08002 * 120.00107 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00165 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99733 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00144 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47112 * 60.00322 * 17 15 13 19 19 H 1.48508 * 109.47014 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47227 * 299.99810 * 17 15 13 21 21 C 1.55156 * 101.48695 * 37.29480 * 10 9 8 22 22 C 1.47018 * 125.65407 * 179.97438 * 8 6 5 23 23 H 1.08998 * 109.87993 * 300.43849 * 22 8 6 24 24 C 1.52994 * 109.88257 * 61.44676 * 22 8 6 25 25 O 1.33926 * 125.62190 * 179.71742 * 2 1 3 26 26 H 1.09001 * 109.46921 * 180.30337 * 1 2 3 27 27 H 1.09000 * 109.47541 * 300.30575 * 1 2 3 28 28 H 1.09003 * 109.46716 * 60.30975 * 1 2 3 29 29 H 1.07998 * 126.44520 * 0.04679 * 3 2 1 30 30 H 1.08002 * 126.64981 * 179.83992 * 4 3 2 31 31 H 1.09001 * 110.36356 * 274.74589 * 9 8 6 32 32 H 1.09006 * 110.36556 * 37.07149 * 9 8 6 33 33 H 0.97004 * 119.99831 * 272.97487 * 12 10 9 34 34 H 0.97000 * 119.99665 * 180.02562 * 16 15 13 35 35 H 1.09001 * 110.71687 * 205.96581 * 21 10 9 36 36 H 1.09003 * 110.72087 * 82.69849 * 21 10 9 37 37 H 1.09006 * 109.46954 * 58.54714 * 24 22 8 38 38 H 1.09000 * 109.47532 * 178.54531 * 24 22 8 39 39 H 1.09004 * 109.47473 * 298.55173 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6250 0.6533 -0.0045 5 6 3.5824 -0.7115 0.0027 6 6 4.7415 -1.6099 0.0074 7 8 5.8681 -1.1498 0.0045 8 7 4.5591 -2.9453 0.0140 9 6 3.2558 -3.6344 0.0236 10 6 3.5440 -5.0312 -0.5866 11 1 3.5764 -4.9872 -1.6752 12 7 2.5564 -6.0137 -0.1329 13 6 1.4351 -6.2532 -0.8814 14 1 1.2784 -5.7176 -1.8060 15 6 0.4992 -7.1838 -0.4512 16 7 0.6898 -7.8362 0.6759 17 14 -1.0309 -7.5100 -1.4719 18 1 -0.6338 -7.9965 -2.8176 19 1 -1.8640 -8.5395 -0.7999 20 1 -1.8110 -6.2541 -1.6098 21 6 4.9467 -5.3411 -0.0005 22 6 5.6268 -3.9560 0.0187 23 1 6.2528 -3.8380 -0.8658 24 6 6.4777 -3.8081 1.2815 25 8 2.2870 -1.0886 0.0054 26 1 -0.3633 -1.0277 0.0054 27 1 -0.3634 0.5186 0.8872 28 1 -0.3633 0.5090 -0.8928 29 1 1.9613 2.1261 0.0007 30 1 4.5113 1.2704 -0.0081 31 1 2.8863 -3.7327 1.0443 32 1 2.5362 -3.0935 -0.5910 33 1 2.6970 -6.4946 0.6978 34 1 0.0360 -8.4867 0.9763 35 1 5.4914 -6.0291 -0.6470 36 1 4.8625 -5.7437 1.0090 37 1 5.8442 -3.9194 2.1616 38 1 7.2508 -4.5765 1.2909 39 1 6.9443 -2.8230 1.2921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987954533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:38 Heat of formation + Delta-G solvation = -7.415860 kcal Electronic energy + Delta-G solvation = -21945.236411 eV Core-core repulsion = 18661.870583 eV Total energy + Delta-G solvation = -3283.365828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.64869 -39.76110 -37.40977 -34.25655 -33.32144 -32.18899 -31.48676 -31.28941 -28.46474 -27.15623 -25.44200 -23.98168 -22.83770 -21.56682 -20.69751 -20.30164 -19.34290 -17.43031 -17.20325 -16.52035 -16.13028 -15.47762 -15.01197 -14.45638 -14.02682 -13.76817 -13.51203 -13.35153 -13.13529 -13.08779 -13.04449 -12.85633 -12.55210 -12.33314 -12.15800 -11.95954 -11.69418 -11.16731 -11.03439 -10.76135 -10.66784 -10.33726 -10.09314 -10.01349 -9.97621 -9.78065 -9.04669 -8.61444 -8.27288 -7.12041 -5.87517 -3.18389 1.13807 2.33353 2.66630 3.23693 3.33089 3.37805 3.42976 3.43568 4.45458 4.55438 4.78707 4.91462 5.05058 5.12466 5.22470 5.26275 5.33078 5.47628 5.53524 5.56647 5.64410 5.70676 5.76386 5.80723 5.83130 5.95815 6.09228 6.14457 6.24223 6.33047 6.38925 6.44074 6.48756 6.63071 6.82160 6.99521 7.60375 7.68922 8.21287 8.30130 9.41815 9.95004 10.30391 11.34399 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.005909 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.106908 B = 4737.598562 C = 6446.976841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.018 3.982 3 C -0.230 4.230 4 C -0.125 4.125 5 C -0.071 4.071 6 C 0.612 3.388 7 O -0.535 6.535 8 N -0.599 5.599 9 C 0.073 3.927 10 C 0.173 3.827 11 H 0.069 0.931 12 N -0.710 5.710 13 C -0.249 4.249 14 H 0.072 0.928 15 C -0.007 4.007 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C -0.138 4.138 22 C 0.139 3.861 23 H 0.075 0.925 24 C -0.162 4.162 25 O -0.149 6.149 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.387 0.613 34 H 0.258 0.742 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 13.982 -0.312 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.035 4.035 3 C -0.249 4.249 4 C -0.146 4.146 5 C -0.123 4.123 6 C 0.400 3.600 7 O -0.416 6.416 8 N -0.331 5.331 9 C -0.053 4.053 10 C 0.060 3.940 11 H 0.087 0.913 12 N -0.349 5.349 13 C -0.380 4.380 14 H 0.090 0.910 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.739 3.261 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.177 4.177 22 C 0.036 3.964 23 H 0.093 0.907 24 C -0.220 4.220 25 O -0.044 6.044 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.171 0.829 30 H 0.175 0.825 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.222 0.778 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.437 13.887 -0.429 14.585 hybrid contribution -0.902 -0.082 -0.162 0.920 sum 3.536 13.805 -0.590 14.263 Atomic orbital electron populations 1.20433 0.84721 1.04969 1.03655 1.22911 0.94483 0.84372 1.01750 1.21511 0.92342 0.99620 1.11397 1.21856 0.98446 0.92819 1.01438 1.22029 0.82120 0.94361 1.13805 1.16237 0.85951 0.80366 0.77398 1.90819 1.22150 1.75779 1.52809 1.48536 1.10062 1.04038 1.70452 1.23700 0.83273 0.96083 1.02206 1.21345 0.88032 0.87530 0.97080 0.91310 1.42302 1.21477 1.44286 1.26867 1.19214 0.97254 1.18483 1.03069 0.91010 1.24762 0.99066 0.99106 0.97464 1.69651 1.36840 1.29126 1.22081 0.86259 0.82874 0.77597 0.79383 1.21123 1.21609 1.21153 1.23065 0.97532 0.94294 1.02766 1.21578 0.88762 0.87483 0.98620 0.90661 1.22142 0.99828 1.02724 0.97264 1.84260 1.15896 1.34253 1.69988 0.89752 0.89336 0.89340 0.82939 0.82522 0.91198 0.90434 0.77819 0.93262 0.90117 0.90271 0.92463 0.91649 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.41 36.01 0.37 -0.37 16 2 C 0.02 0.23 7.31 -35.41 -0.26 -0.03 16 3 C -0.23 -2.73 10.77 -39.89 -0.43 -3.16 16 4 C -0.12 -1.74 10.62 -39.39 -0.42 -2.16 16 5 C -0.07 -1.15 6.93 -36.80 -0.26 -1.41 16 6 C 0.61 10.76 7.61 -12.86 -0.10 10.66 16 7 O -0.54 -10.17 15.89 5.19 0.08 -10.09 16 8 N -0.60 -10.15 3.06 -164.42 -0.50 -10.66 16 9 C 0.07 1.32 5.88 -2.41 -0.01 1.31 16 10 C 0.17 3.29 3.73 -65.66 -0.24 3.05 16 11 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 12 N -0.71 -16.80 5.24 -51.24 -0.27 -17.07 16 13 C -0.25 -6.58 9.96 -15.06 -0.15 -6.73 16 14 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 15 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 16 N -0.93 -26.96 13.06 55.49 0.72 -26.23 16 17 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 C -0.14 -2.17 6.12 -24.90 -0.15 -2.33 16 22 C 0.14 2.11 3.45 -66.96 -0.23 1.88 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 24 C -0.16 -2.25 9.11 37.15 0.34 -1.91 16 25 O -0.15 -2.37 7.85 5.01 0.04 -2.33 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.45 6.20 -51.93 -0.32 1.13 16 33 H 0.39 9.73 7.76 -40.82 -0.32 9.41 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.27 7.72 -51.93 -0.40 0.87 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.00 6.87 -51.93 -0.36 0.65 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -30.51 327.43 -7.24 -37.75 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.59 Total: 8.69 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.63 Total: -1.49 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.05 Total: -53.96 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.12 Total: -12.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.51 -7.24 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987954533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.332 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds