Wall clock time and date at job start Tue Mar 31 2020 00:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35139 * 125.61450 * 2 1 4 4 C 1.40360 * 107.11532 * 180.19147 * 3 2 1 5 5 C 1.36548 * 106.70846 * 359.57258 * 4 3 2 6 6 C 1.46650 * 125.99044 * 180.28893 * 5 4 3 7 7 O 1.21693 * 120.00274 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00431 * 180.02562 * 6 5 4 9 9 C 1.47432 * 125.64352 * 359.68747 * 8 6 5 10 10 C 1.55127 * 104.71955 * 155.81809 * 9 8 6 11 11 H 1.08997 * 111.22601 * 279.17308 * 10 9 8 12 12 N 1.46506 * 110.90365 * 155.27558 * 10 9 8 13 13 C 1.36932 * 120.00085 * 92.97734 * 12 10 9 14 14 H 1.08002 * 120.00107 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00165 * 180.02562 * 13 12 10 16 16 N 1.31623 * 119.99733 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00144 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47112 * 60.00322 * 17 15 13 19 19 H 1.48508 * 109.47014 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47227 * 299.99810 * 17 15 13 21 21 C 1.55156 * 101.48695 * 37.29480 * 10 9 8 22 22 C 1.47018 * 125.65407 * 179.97438 * 8 6 5 23 23 H 1.08998 * 109.87993 * 300.43849 * 22 8 6 24 24 C 1.52994 * 109.88257 * 61.44676 * 22 8 6 25 25 O 1.33926 * 125.62190 * 179.71742 * 2 1 3 26 26 H 1.09001 * 109.46921 * 180.30337 * 1 2 3 27 27 H 1.09000 * 109.47541 * 300.30575 * 1 2 3 28 28 H 1.09003 * 109.46716 * 60.30975 * 1 2 3 29 29 H 1.07998 * 126.44520 * 0.04679 * 3 2 1 30 30 H 1.08002 * 126.64981 * 179.83992 * 4 3 2 31 31 H 1.09001 * 110.36356 * 274.74589 * 9 8 6 32 32 H 1.09006 * 110.36556 * 37.07149 * 9 8 6 33 33 H 0.97004 * 119.99831 * 272.97487 * 12 10 9 34 34 H 0.97000 * 119.99665 * 180.02562 * 16 15 13 35 35 H 1.09001 * 110.71687 * 205.96581 * 21 10 9 36 36 H 1.09003 * 110.72087 * 82.69849 * 21 10 9 37 37 H 1.09006 * 109.46954 * 58.54714 * 24 22 8 38 38 H 1.09000 * 109.47532 * 178.54531 * 24 22 8 39 39 H 1.09004 * 109.47473 * 298.55173 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6250 0.6533 -0.0045 5 6 3.5824 -0.7115 0.0027 6 6 4.7415 -1.6099 0.0074 7 8 5.8681 -1.1498 0.0045 8 7 4.5591 -2.9453 0.0140 9 6 3.2558 -3.6344 0.0236 10 6 3.5440 -5.0312 -0.5866 11 1 3.5764 -4.9872 -1.6752 12 7 2.5564 -6.0137 -0.1329 13 6 1.4351 -6.2532 -0.8814 14 1 1.2784 -5.7176 -1.8060 15 6 0.4992 -7.1838 -0.4512 16 7 0.6898 -7.8362 0.6759 17 14 -1.0309 -7.5100 -1.4719 18 1 -0.6338 -7.9965 -2.8176 19 1 -1.8640 -8.5395 -0.7999 20 1 -1.8110 -6.2541 -1.6098 21 6 4.9467 -5.3411 -0.0005 22 6 5.6268 -3.9560 0.0187 23 1 6.2528 -3.8380 -0.8658 24 6 6.4777 -3.8081 1.2815 25 8 2.2870 -1.0886 0.0054 26 1 -0.3633 -1.0277 0.0054 27 1 -0.3634 0.5186 0.8872 28 1 -0.3633 0.5090 -0.8928 29 1 1.9613 2.1261 0.0007 30 1 4.5113 1.2704 -0.0081 31 1 2.8863 -3.7327 1.0443 32 1 2.5362 -3.0935 -0.5910 33 1 2.6970 -6.4946 0.6978 34 1 0.0360 -8.4867 0.9763 35 1 5.4914 -6.0291 -0.6470 36 1 4.8625 -5.7437 1.0090 37 1 5.8442 -3.9194 2.1616 38 1 7.2508 -4.5765 1.2909 39 1 6.9443 -2.8230 1.2921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987954533.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:36 Heat of formation + Delta-G solvation = -26.131134 kcal Electronic energy + Delta-G solvation = -21946.047967 eV Core-core repulsion = 18661.870583 eV Total energy + Delta-G solvation = -3284.177384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.73192 -41.12116 -38.84429 -36.04694 -34.36915 -33.40081 -33.19763 -32.43544 -30.13536 -28.18804 -26.77847 -25.84182 -24.10285 -22.68059 -21.91299 -21.76022 -20.58266 -19.29998 -18.53466 -17.81018 -17.39098 -16.93349 -16.31712 -16.00741 -15.52208 -15.32495 -14.94382 -14.71939 -14.33516 -14.06827 -14.04593 -13.86047 -13.83016 -13.70001 -13.47918 -13.09326 -12.87167 -12.84438 -12.79259 -12.36699 -12.15899 -12.07289 -11.76730 -11.55599 -11.35338 -11.04690 -10.96503 -9.90751 -9.43056 -9.07708 -7.95364 -5.25882 -0.01883 1.33056 1.49846 1.51476 1.55064 1.58262 2.00453 2.05935 2.56504 3.30825 3.35397 3.68875 3.79441 3.89429 3.92782 3.94353 4.12947 4.24007 4.40686 4.46685 4.47708 4.57012 4.66760 4.69892 4.70849 4.78388 4.83800 4.91935 5.02883 5.08264 5.12044 5.19402 5.32024 5.36181 5.47983 5.52220 5.92927 6.24735 6.31795 6.88409 7.32991 8.02610 8.28356 9.27172 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014195 B = 0.005909 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.106908 B = 4737.598562 C = 6446.976841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.014 3.986 3 C -0.225 4.225 4 C -0.115 4.115 5 C -0.114 4.114 6 C 0.609 3.391 7 O -0.556 6.556 8 N -0.601 5.601 9 C 0.092 3.908 10 C 0.167 3.833 11 H 0.067 0.933 12 N -0.720 5.720 13 C -0.248 4.248 14 H 0.077 0.923 15 C -0.066 4.066 16 N -0.966 5.966 17 Si 0.970 3.030 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.277 1.277 21 C -0.124 4.124 22 C 0.136 3.864 23 H 0.084 0.916 24 C -0.153 4.153 25 O -0.173 6.173 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.189 0.811 30 H 0.169 0.831 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.378 0.622 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 15.502 -1.023 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.039 4.039 3 C -0.243 4.243 4 C -0.136 4.136 5 C -0.165 4.165 6 C 0.399 3.601 7 O -0.438 6.438 8 N -0.332 5.332 9 C -0.034 4.034 10 C 0.056 3.944 11 H 0.085 0.915 12 N -0.359 5.359 13 C -0.379 4.379 14 H 0.095 0.905 15 C -0.259 4.259 16 N -0.615 5.615 17 Si 0.799 3.201 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.203 1.203 21 C -0.163 4.163 22 C 0.034 3.966 23 H 0.102 0.898 24 C -0.211 4.211 25 O -0.070 6.070 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.206 0.794 30 H 0.186 0.814 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.211 0.789 34 H 0.061 0.939 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.114 15.445 -1.164 16.026 hybrid contribution -0.787 -0.425 0.047 0.896 sum 3.327 15.020 -1.118 15.425 Atomic orbital electron populations 1.20653 0.82181 1.04848 1.05998 1.23777 0.95969 0.83978 1.00155 1.21899 0.91012 1.01049 1.10354 1.22196 0.99975 0.92058 0.99334 1.21939 0.82142 0.95026 1.17429 1.16451 0.86325 0.80465 0.76811 1.90789 1.23017 1.76040 1.53966 1.48545 1.09777 1.04346 1.70578 1.23258 0.83824 0.95450 1.00857 1.21484 0.88890 0.86962 0.97088 0.91461 1.42393 1.21864 1.45233 1.26371 1.19573 0.97768 1.17540 1.03042 0.90527 1.25512 1.02052 0.99627 0.98715 1.69800 1.37751 1.30134 1.23849 0.85275 0.79525 0.77356 0.77978 1.20430 1.22268 1.20278 1.22968 0.95430 0.95076 1.02779 1.21720 0.88569 0.86554 0.99803 0.89751 1.22073 0.99991 1.02933 0.96119 1.84224 1.16064 1.35891 1.70776 0.91087 0.86904 0.86871 0.79371 0.81384 0.92814 0.91224 0.78932 0.93895 0.88314 0.90396 0.93124 0.89053 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.41 71.24 0.74 -0.54 16 2 C 0.01 0.33 7.31 24.97 0.18 0.51 16 3 C -0.22 -4.77 10.77 22.07 0.24 -4.53 16 4 C -0.11 -3.05 10.62 22.39 0.24 -2.81 16 5 C -0.11 -3.70 6.93 24.07 0.17 -3.53 16 6 C 0.61 21.56 7.61 86.44 0.66 22.22 16 7 O -0.56 -21.15 15.89 -4.33 -0.07 -21.22 16 8 N -0.60 -20.43 3.06 -792.31 -2.43 -22.86 16 9 C 0.09 3.39 5.88 86.93 0.51 3.90 16 10 C 0.17 6.35 3.73 46.46 0.17 6.52 16 11 H 0.07 2.59 8.09 -2.39 -0.02 2.57 16 12 N -0.72 -34.39 5.24 -316.01 -1.66 -36.04 16 13 C -0.25 -13.10 9.96 84.03 0.84 -12.26 16 14 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 15 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 16 N -0.97 -56.84 13.06 21.65 0.28 -56.56 16 17 Si 0.97 44.27 29.55 68.60 2.03 46.30 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 C -0.12 -3.80 6.12 31.78 0.19 -3.61 16 22 C 0.14 4.03 3.45 45.34 0.16 4.19 16 23 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 24 C -0.15 -4.10 9.11 71.98 0.66 -3.45 16 25 O -0.17 -5.50 7.85 -4.99 -0.04 -5.54 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.19 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.17 3.94 8.06 -2.91 -0.02 3.91 16 31 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.67 6.20 -2.38 -0.01 2.66 16 33 H 0.38 19.34 7.76 -92.71 -0.72 18.62 16 34 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.08 2.44 7.72 -2.39 -0.02 2.42 16 37 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.62 6.87 -2.38 -0.02 1.60 16 Total: -1.00 -66.02 327.43 3.67 -62.35 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.34 Total: 30.14 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.22 Total: 3.44 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -3.80 Total: -115.46 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.11 Total: -26.76 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -66.02 3.67 -62.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987954533.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.218 kcal (2) G-P(sol) polarization free energy of solvation -66.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds