Wall clock time and date at job start Tue Mar 31 2020 00:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35131 * 125.61579 * 2 1 4 4 C 1.40369 * 107.11294 * 180.02562 * 3 2 1 5 5 C 1.36539 * 106.71010 * 0.02562 * 4 3 2 6 6 C 1.46653 * 125.98763 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00139 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00235 * 179.97438 * 6 5 4 9 9 C 1.47425 * 125.64363 * 0.05156 * 8 6 5 10 10 C 1.54914 * 104.83075 * 204.08090 * 9 8 6 11 11 H 1.08993 * 111.03450 * 81.08248 * 10 9 8 12 12 N 1.46504 * 111.00258 * 204.92014 * 10 9 8 13 13 C 1.36943 * 119.99781 * 267.19686 * 12 10 9 14 14 H 1.08002 * 119.99788 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99622 * 180.27904 * 13 12 10 16 16 N 1.31614 * 120.00467 * 359.72375 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.72266 * 15 13 12 18 18 H 1.48504 * 109.47306 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47021 * 119.99661 * 17 15 13 20 20 H 1.48501 * 109.47039 * 240.00078 * 17 15 13 21 21 C 1.55149 * 101.58116 * 322.99151 * 10 9 8 22 22 C 1.47014 * 125.65005 * 179.97438 * 8 6 5 23 23 H 1.09000 * 109.88255 * 59.57088 * 22 8 6 24 24 C 1.52999 * 109.88369 * 298.40047 * 22 8 6 25 25 O 1.33934 * 125.61662 * 180.29869 * 2 1 3 26 26 H 1.09001 * 109.47495 * 89.99660 * 1 2 3 27 27 H 1.09004 * 109.47056 * 209.99667 * 1 2 3 28 28 H 1.09000 * 109.47074 * 329.99589 * 1 2 3 29 29 H 1.08001 * 126.44315 * 0.02562 * 3 2 1 30 30 H 1.07996 * 126.63920 * 179.97438 * 4 3 2 31 31 H 1.09004 * 110.36839 * 85.24810 * 9 8 6 32 32 H 1.08995 * 110.37517 * 322.92309 * 9 8 6 33 33 H 0.97000 * 120.00410 * 87.20011 * 12 10 9 34 34 H 0.96995 * 120.00147 * 180.02562 * 16 15 13 35 35 H 1.09007 * 110.72112 * 153.86341 * 21 10 9 36 36 H 1.08999 * 110.72697 * 277.13701 * 21 10 9 37 37 H 1.08999 * 109.47575 * 302.19548 * 24 22 8 38 38 H 1.09008 * 109.46550 * 62.19505 * 24 22 8 39 39 H 1.09003 * 109.47111 * 182.18882 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5590 -2.9455 -0.0032 9 6 3.2557 -3.6346 -0.0033 10 6 3.5442 -5.0287 0.6074 11 1 3.5774 -4.9798 1.6957 12 7 2.5564 -6.0132 0.1587 13 6 1.4354 -6.2493 0.9090 14 1 1.2799 -5.7101 1.8318 15 6 0.5023 -7.1863 0.4867 16 7 0.6922 -7.8438 -0.6375 17 14 -1.0229 -7.5140 1.5142 18 1 -1.0001 -6.6518 2.7231 19 1 -2.2349 -7.2100 0.7118 20 1 -1.0459 -8.9409 1.9248 21 6 4.9465 -5.3412 0.0216 22 6 5.6267 -3.9561 -0.0051 23 1 6.2540 -3.8343 0.8779 24 6 6.4733 -3.8164 -1.2718 25 8 2.2869 -1.0888 -0.0057 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.9612 2.1260 0.0004 30 1 4.5112 1.2703 -0.0011 31 1 2.8807 -3.7368 -1.0217 32 1 2.5392 -3.0914 0.6129 33 1 2.6963 -6.4978 -0.6699 34 1 0.0400 -8.4982 -0.9327 35 1 5.4917 -6.0264 0.6709 36 1 4.8617 -5.7483 -0.9859 37 1 5.8347 -3.9202 -2.1490 38 1 6.9503 -2.8363 -1.2836 39 1 7.2381 -4.5929 -1.2852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987954535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:40 Heat of formation + Delta-G solvation = -26.444664 kcal Electronic energy + Delta-G solvation = -21945.092341 eV Core-core repulsion = 18660.901362 eV Total energy + Delta-G solvation = -3284.190979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.73011 -41.12435 -38.85038 -36.05165 -34.37098 -33.40175 -33.20154 -32.43680 -30.14063 -28.18614 -26.78213 -25.84844 -24.10439 -22.68333 -21.91220 -21.76035 -20.58275 -19.30456 -18.53761 -17.81360 -17.39019 -16.94044 -16.31457 -16.00860 -15.52451 -15.33119 -14.94396 -14.71238 -14.33996 -14.09105 -14.03057 -13.85660 -13.83230 -13.70672 -13.48226 -13.09229 -12.91042 -12.85054 -12.78618 -12.35616 -12.09439 -12.06930 -11.77068 -11.55019 -11.35600 -11.04979 -10.98976 -9.90843 -9.43592 -9.08048 -7.95966 -5.26398 -0.01920 1.33216 1.49239 1.49955 1.54948 1.59896 2.00474 2.05708 2.55992 3.30629 3.35273 3.68930 3.79478 3.89189 3.92712 3.94363 4.12900 4.23912 4.40889 4.46634 4.50445 4.57048 4.66719 4.69253 4.69847 4.78340 4.83728 4.91841 5.02922 5.08524 5.12125 5.19459 5.31928 5.36121 5.47921 5.52616 5.92838 6.24551 6.31710 6.88348 7.32742 8.02234 8.27874 9.27055 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.005902 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.443159 B = 4742.732726 C = 6449.813135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.013 3.987 3 C -0.224 4.224 4 C -0.115 4.115 5 C -0.113 4.113 6 C 0.609 3.391 7 O -0.556 6.556 8 N -0.601 5.601 9 C 0.092 3.908 10 C 0.166 3.834 11 H 0.067 0.933 12 N -0.720 5.720 13 C -0.245 4.245 14 H 0.077 0.923 15 C -0.067 4.067 16 N -0.966 5.966 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.293 1.293 20 H -0.294 1.294 21 C -0.124 4.124 22 C 0.136 3.864 23 H 0.085 0.915 24 C -0.153 4.153 25 O -0.173 6.173 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.189 0.811 30 H 0.169 0.831 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.378 0.622 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 15.571 0.991 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.039 4.039 3 C -0.243 4.243 4 C -0.136 4.136 5 C -0.165 4.165 6 C 0.399 3.601 7 O -0.438 6.438 8 N -0.332 5.332 9 C -0.034 4.034 10 C 0.056 3.944 11 H 0.085 0.915 12 N -0.359 5.359 13 C -0.376 4.376 14 H 0.095 0.905 15 C -0.260 4.260 16 N -0.616 5.616 17 Si 0.799 3.201 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.221 1.221 21 C -0.163 4.163 22 C 0.033 3.967 23 H 0.103 0.897 24 C -0.211 4.211 25 O -0.070 6.070 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.140 0.860 29 H 0.207 0.793 30 H 0.186 0.814 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.211 0.789 34 H 0.061 0.939 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.181 15.527 1.143 16.121 hybrid contribution -0.793 -0.455 -0.070 0.917 sum 3.388 15.072 1.073 15.486 Atomic orbital electron populations 1.20650 0.82171 1.05687 1.05159 1.23777 0.95973 0.83978 1.00181 1.21925 0.91015 1.01038 1.10284 1.22197 0.99989 0.92070 0.99353 1.21940 0.82146 0.95014 1.17374 1.16451 0.86327 0.80462 0.76811 1.90789 1.23020 1.76036 1.53955 1.48540 1.09761 1.04346 1.70588 1.23207 0.83829 0.95438 1.00889 1.21438 0.88899 0.86987 0.97118 0.91504 1.42410 1.21885 1.44958 1.26630 1.19646 0.97804 1.17053 1.03125 0.90488 1.25507 1.02095 0.99574 0.98796 1.69806 1.37774 1.29849 1.24158 0.85140 0.79465 0.77303 0.78238 1.19023 1.22026 1.22135 1.22972 0.95417 0.95089 1.02779 1.21726 0.88596 0.86555 0.99781 0.89728 1.22071 0.99996 1.02950 0.96073 1.84218 1.16051 1.35891 1.70826 0.88297 0.90631 0.85982 0.79345 0.81384 0.92819 0.91212 0.78929 0.93901 0.88302 0.90398 0.93135 0.92694 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.41 71.23 0.74 -0.53 16 2 C 0.01 0.32 7.31 24.97 0.18 0.50 16 3 C -0.22 -4.74 10.77 22.07 0.24 -4.50 16 4 C -0.12 -3.05 10.62 22.39 0.24 -2.82 16 5 C -0.11 -3.67 6.93 24.07 0.17 -3.50 16 6 C 0.61 21.52 7.61 86.44 0.66 22.18 16 7 O -0.56 -21.12 15.91 -4.32 -0.07 -21.19 16 8 N -0.60 -20.39 3.06 -792.74 -2.43 -22.82 16 9 C 0.09 3.39 5.86 86.86 0.51 3.90 16 10 C 0.17 6.33 3.71 46.38 0.17 6.50 16 11 H 0.07 2.57 8.09 -2.39 -0.02 2.55 16 12 N -0.72 -34.34 5.24 -316.38 -1.66 -36.00 16 13 C -0.24 -12.92 9.96 84.03 0.84 -12.09 16 14 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 15 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 16 N -0.97 -56.87 13.06 21.65 0.28 -56.58 16 17 Si 0.97 44.31 29.55 68.60 2.03 46.34 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 C -0.12 -3.80 6.13 31.78 0.19 -3.60 16 22 C 0.14 4.02 3.46 45.35 0.16 4.18 16 23 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 24 C -0.15 -4.09 9.09 71.98 0.65 -3.44 16 25 O -0.17 -5.49 7.86 -5.09 -0.04 -5.53 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 31 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.07 2.67 6.23 -2.39 -0.01 2.65 16 33 H 0.38 19.32 7.76 -92.71 -0.72 18.60 16 34 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 36 H 0.08 2.43 7.71 -2.39 -0.02 2.42 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.61 6.90 -2.38 -0.02 1.59 16 39 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -66.13 327.46 3.66 -62.47 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.34 Total: 29.74 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.22 Total: 3.57 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -3.81 Total: -115.41 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.11 Total: -26.72 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -66.13 3.66 -62.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987954535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.025 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds