Wall clock time and date at job start Tue Mar 31 2020 00:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33659 * 125.80222 * 2 1 4 4 C 1.34212 * 110.90855 * 179.97438 * 3 2 1 5 5 C 1.34176 * 109.12561 * 359.74436 * 4 3 2 6 6 C 1.36416 * 125.80472 * 179.97438 * 2 1 3 7 7 C 1.47379 * 127.19205 * 359.97240 * 6 2 1 8 8 O 1.21621 * 119.99820 * 359.97438 * 7 6 2 9 9 N 1.34769 * 120.00371 * 179.97438 * 7 6 2 10 10 C 1.47028 * 125.64746 * 359.96969 * 9 7 6 11 11 C 1.54326 * 107.27035 * 178.98293 * 10 9 7 12 12 H 1.08994 * 110.72533 * 96.34527 * 11 10 9 13 13 N 1.46505 * 110.71655 * 219.44280 * 11 10 9 14 14 C 1.36931 * 119.99788 * 273.54427 * 13 11 10 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 11 16 16 C 1.38817 * 119.99680 * 179.72358 * 14 13 11 17 17 N 1.31614 * 119.99888 * 0.27479 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.27671 * 16 14 13 19 19 H 1.48508 * 109.46872 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 119.99997 * 18 16 14 21 21 H 1.48498 * 109.47018 * 240.00044 * 18 16 14 22 22 C 1.55158 * 102.94077 * 337.80309 * 11 10 9 23 23 C 1.47423 * 125.65219 * 180.02562 * 9 7 6 24 24 H 1.09003 * 110.36690 * 85.24702 * 23 9 7 25 25 C 1.52998 * 110.36799 * 322.93133 * 23 9 7 26 26 H 1.09000 * 109.47231 * 270.00264 * 1 2 3 27 27 H 1.08995 * 109.46938 * 30.00024 * 1 2 3 28 28 H 1.09002 * 109.46505 * 150.00266 * 1 2 3 29 29 H 1.08002 * 125.43641 * 180.02562 * 4 3 2 30 30 H 1.07997 * 127.02254 * 180.26536 * 5 4 3 31 31 H 1.09001 * 109.88116 * 59.56115 * 10 9 7 32 32 H 1.09006 * 109.87821 * 298.39605 * 10 9 7 33 33 H 0.97000 * 119.99792 * 93.54222 * 13 11 10 34 34 H 0.97005 * 119.99715 * 179.97438 * 17 16 14 35 35 H 1.09003 * 111.00099 * 153.58417 * 22 11 10 36 36 H 1.09003 * 111.00670 * 277.43261 * 22 11 10 37 37 H 1.09002 * 109.47148 * 61.44670 * 25 23 9 38 38 H 1.09000 * 109.47516 * 181.45338 * 25 23 9 39 39 H 1.09003 * 109.46997 * 301.45090 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6849 -0.5990 0.0066 6 6 2.3051 -1.1064 0.0005 7 6 1.8741 -2.5157 0.0017 8 8 0.6890 -2.7892 0.0028 9 7 2.7931 -3.5015 0.0015 10 6 4.2513 -3.3135 -0.0004 11 6 4.8941 -4.7162 0.0263 12 1 5.1583 -5.0387 -0.9807 13 7 6.0711 -4.7304 0.8986 14 6 7.2954 -4.3699 0.4023 15 1 7.3933 -4.0746 -0.6319 16 6 8.4096 -4.3778 1.2303 17 7 8.2902 -4.7370 2.4908 18 14 10.0783 -3.8785 0.5553 19 1 9.9450 -3.5215 -0.8800 20 1 10.5879 -2.7069 1.3121 21 1 11.0285 -5.0108 0.6971 22 6 3.7654 -5.6046 0.6130 23 6 2.5029 -4.9469 0.0021 24 1 2.3446 -5.3024 -1.0161 25 6 1.2764 -5.2434 0.8673 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3632 -0.8901 -0.5138 29 1 4.4173 1.4285 0.0011 30 1 4.5928 -1.1839 0.0126 31 1 4.5536 -2.7502 0.8824 32 1 4.5555 -2.7835 -0.9031 33 1 5.9832 -4.9952 1.8276 34 1 9.0689 -4.7429 3.0693 35 1 3.8680 -6.6373 0.2798 36 1 3.7484 -5.5468 1.7014 37 1 0.4083 -4.7285 0.4557 38 1 1.0905 -6.3173 0.8784 39 1 1.4566 -4.8954 1.8845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987981843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:59 Heat of formation + Delta-G solvation = -0.948170 kcal Electronic energy + Delta-G solvation = -22018.931630 eV Core-core repulsion = 18735.846262 eV Total energy + Delta-G solvation = -3283.085368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.48962 -39.76623 -37.28157 -34.20297 -33.25859 -32.00907 -31.41681 -31.02396 -28.44983 -26.90039 -25.45120 -24.12283 -23.20124 -21.70543 -20.65007 -19.93561 -18.64106 -17.33249 -16.95274 -16.41148 -16.14023 -15.80226 -15.08299 -14.56965 -14.09617 -13.73217 -13.67919 -13.37738 -13.09344 -13.04594 -12.97525 -12.76431 -12.62520 -12.02644 -11.89362 -11.70643 -11.66857 -11.23610 -11.00909 -10.70568 -10.69556 -10.33143 -10.04946 -9.79507 -9.68475 -9.44265 -9.02780 -8.60063 -8.20495 -7.13015 -5.88785 -3.19854 1.44955 2.18529 2.85507 3.29382 3.36059 3.42356 3.44323 3.55963 4.48059 4.58478 4.73920 4.96269 5.10548 5.17551 5.24762 5.27101 5.46263 5.48060 5.56160 5.63639 5.67021 5.70238 5.83201 5.85548 5.93162 6.11294 6.12992 6.15474 6.21888 6.40692 6.42494 6.48869 6.50418 6.73494 6.86432 7.09900 7.59858 7.86162 8.28465 8.45755 9.40709 9.94761 10.29801 11.33216 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.005323 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.581975 B = 5258.488947 C = 6601.209998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.066 3.934 3 O -0.180 6.180 4 C -0.048 4.048 5 C -0.188 4.188 6 C -0.237 4.237 7 C 0.603 3.397 8 O -0.554 6.554 9 N -0.601 5.601 10 C 0.071 3.929 11 C 0.170 3.830 12 H 0.066 0.934 13 N -0.713 5.713 14 C -0.249 4.249 15 H 0.073 0.927 16 C -0.008 4.008 17 N -0.928 5.928 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.136 4.136 23 C 0.138 3.862 24 H 0.073 0.927 25 C -0.163 4.163 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.207 0.793 30 H 0.172 0.828 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.387 0.613 34 H 0.256 0.744 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.969 6.607 -5.120 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.013 3.987 3 O -0.076 6.076 4 C -0.114 4.114 5 C -0.207 4.207 6 C -0.241 4.241 7 C 0.394 3.606 8 O -0.436 6.436 9 N -0.333 5.333 10 C -0.055 4.055 11 C 0.058 3.942 12 H 0.083 0.917 13 N -0.354 5.354 14 C -0.380 4.380 15 H 0.091 0.909 16 C -0.204 4.204 17 N -0.576 5.576 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.175 4.175 23 C 0.035 3.965 24 H 0.091 0.909 25 C -0.220 4.220 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.126 0.874 29 H 0.224 0.776 30 H 0.189 0.811 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.529 6.837 -5.207 16.028 hybrid contribution 1.491 0.182 0.073 1.504 sum -12.038 7.020 -5.134 14.851 Atomic orbital electron populations 1.20549 0.83973 1.04732 1.04146 1.22732 0.93971 0.83235 0.98723 1.83728 1.17329 1.34976 1.71610 1.23908 0.83230 0.96634 1.07581 1.23614 0.97660 0.94598 1.04862 1.21159 0.93427 0.93790 1.15749 1.16822 0.84491 0.83183 0.76070 1.90642 1.16367 1.83637 1.52942 1.48351 1.07403 1.05855 1.71712 1.23580 0.77948 1.02591 1.01350 1.21223 0.87097 0.90503 0.95420 0.91656 1.42391 1.02527 1.80009 1.10433 1.19294 0.85214 1.38227 0.95294 0.90885 1.24768 0.98096 1.01841 0.95721 1.69671 1.29477 1.53628 1.04805 0.86134 0.84301 0.77817 0.77998 1.20438 1.21773 1.21752 1.23146 0.93577 0.99461 1.01328 1.21862 0.95721 0.79713 0.99208 0.90942 1.22163 0.98805 1.01198 0.99864 0.89630 0.90761 0.87408 0.77615 0.81075 0.90464 0.92090 0.77841 0.93361 0.90119 0.90473 0.89727 0.92376 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.89 36.01 0.36 -0.50 16 2 C 0.07 0.93 7.37 -34.96 -0.26 0.67 16 3 O -0.18 -2.40 10.52 7.64 0.08 -2.32 16 4 C -0.05 -0.60 12.03 29.30 0.35 -0.25 16 5 C -0.19 -2.76 9.42 -37.46 -0.35 -3.12 16 6 C -0.24 -3.75 6.24 -103.28 -0.64 -4.40 16 7 C 0.60 10.34 7.62 -12.54 -0.10 10.24 16 8 O -0.55 -9.91 12.50 5.26 0.07 -9.85 16 9 N -0.60 -9.96 3.24 -164.31 -0.53 -10.50 16 10 C 0.07 1.23 4.75 -3.06 -0.01 1.22 16 11 C 0.17 3.15 3.59 -66.09 -0.24 2.91 16 12 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 13 N -0.71 -16.65 5.18 -51.65 -0.27 -16.92 16 14 C -0.25 -6.46 9.98 -15.06 -0.15 -6.61 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 18 Si 0.91 21.34 29.55 -169.99 -5.02 16.31 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.14 -2.16 6.11 -24.58 -0.15 -2.31 16 23 C 0.14 2.08 3.77 -66.42 -0.25 1.83 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 25 C -0.16 -2.32 8.71 37.16 0.32 -2.00 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.11 1.30 6.49 -51.93 -0.34 0.96 16 29 H 0.21 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.17 2.57 4.87 -52.49 -0.26 2.32 16 31 H 0.08 1.46 6.72 -51.93 -0.35 1.11 16 32 H 0.06 1.02 7.04 -51.93 -0.37 0.65 16 33 H 0.39 9.73 7.71 -40.82 -0.31 9.41 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 37 H 0.08 1.32 5.88 -51.93 -0.31 1.01 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -30.13 318.16 -6.64 -36.77 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.27 Total: 10.43 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.22 Total: -2.61 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.08 Total: -53.53 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.15 Total: -12.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.13 -6.64 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987981843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.822 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds