Wall clock time and date at job start Tue Mar 31 2020 00:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33659 * 125.80222 * 2 1 4 4 C 1.34212 * 110.90855 * 179.97438 * 3 2 1 5 5 C 1.34176 * 109.12561 * 359.74436 * 4 3 2 6 6 C 1.36416 * 125.80472 * 179.97438 * 2 1 3 7 7 C 1.47379 * 127.19205 * 359.97240 * 6 2 1 8 8 O 1.21621 * 119.99820 * 359.97438 * 7 6 2 9 9 N 1.34769 * 120.00371 * 179.97438 * 7 6 2 10 10 C 1.47028 * 125.64746 * 359.96969 * 9 7 6 11 11 C 1.54326 * 107.27035 * 178.98293 * 10 9 7 12 12 H 1.08994 * 110.72533 * 96.34527 * 11 10 9 13 13 N 1.46505 * 110.71655 * 219.44280 * 11 10 9 14 14 C 1.36931 * 119.99788 * 273.54427 * 13 11 10 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 11 16 16 C 1.38817 * 119.99680 * 179.72358 * 14 13 11 17 17 N 1.31614 * 119.99888 * 0.27479 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.27671 * 16 14 13 19 19 H 1.48508 * 109.46872 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 119.99997 * 18 16 14 21 21 H 1.48498 * 109.47018 * 240.00044 * 18 16 14 22 22 C 1.55158 * 102.94077 * 337.80309 * 11 10 9 23 23 C 1.47423 * 125.65219 * 180.02562 * 9 7 6 24 24 H 1.09003 * 110.36690 * 85.24702 * 23 9 7 25 25 C 1.52998 * 110.36799 * 322.93133 * 23 9 7 26 26 H 1.09000 * 109.47231 * 270.00264 * 1 2 3 27 27 H 1.08995 * 109.46938 * 30.00024 * 1 2 3 28 28 H 1.09002 * 109.46505 * 150.00266 * 1 2 3 29 29 H 1.08002 * 125.43641 * 180.02562 * 4 3 2 30 30 H 1.07997 * 127.02254 * 180.26536 * 5 4 3 31 31 H 1.09001 * 109.88116 * 59.56115 * 10 9 7 32 32 H 1.09006 * 109.87821 * 298.39605 * 10 9 7 33 33 H 0.97000 * 119.99792 * 93.54222 * 13 11 10 34 34 H 0.97005 * 119.99715 * 179.97438 * 17 16 14 35 35 H 1.09003 * 111.00099 * 153.58417 * 22 11 10 36 36 H 1.09003 * 111.00670 * 277.43261 * 22 11 10 37 37 H 1.09002 * 109.47148 * 61.44670 * 25 23 9 38 38 H 1.09000 * 109.47516 * 181.45338 * 25 23 9 39 39 H 1.09003 * 109.46997 * 301.45090 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 0.0006 5 6 3.6849 -0.5990 0.0066 6 6 2.3051 -1.1064 0.0005 7 6 1.8741 -2.5157 0.0017 8 8 0.6890 -2.7892 0.0028 9 7 2.7931 -3.5015 0.0015 10 6 4.2513 -3.3135 -0.0004 11 6 4.8941 -4.7162 0.0263 12 1 5.1583 -5.0387 -0.9807 13 7 6.0711 -4.7304 0.8986 14 6 7.2954 -4.3699 0.4023 15 1 7.3933 -4.0746 -0.6319 16 6 8.4096 -4.3778 1.2303 17 7 8.2902 -4.7370 2.4908 18 14 10.0783 -3.8785 0.5553 19 1 9.9450 -3.5215 -0.8800 20 1 10.5879 -2.7069 1.3121 21 1 11.0285 -5.0108 0.6971 22 6 3.7654 -5.6046 0.6130 23 6 2.5029 -4.9469 0.0021 24 1 2.3446 -5.3024 -1.0161 25 6 1.2764 -5.2434 0.8673 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3632 -0.8901 -0.5138 29 1 4.4173 1.4285 0.0011 30 1 4.5928 -1.1839 0.0126 31 1 4.5536 -2.7502 0.8824 32 1 4.5555 -2.7835 -0.9031 33 1 5.9832 -4.9952 1.8276 34 1 9.0689 -4.7429 3.0693 35 1 3.8680 -6.6373 0.2798 36 1 3.7484 -5.5468 1.7014 37 1 0.4083 -4.7285 0.4557 38 1 1.0905 -6.3173 0.8784 39 1 1.4566 -4.8954 1.8845 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987981843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:57 Heat of formation + Delta-G solvation = -19.659544 kcal Electronic energy + Delta-G solvation = -22019.743017 eV Core-core repulsion = 18735.846262 eV Total energy + Delta-G solvation = -3283.896754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.55620 -41.09098 -38.68083 -35.96589 -34.40872 -33.30033 -32.93512 -32.22525 -30.10263 -27.94518 -26.73985 -25.88722 -24.56098 -22.86211 -22.09294 -21.20876 -19.79254 -19.20484 -18.18787 -17.68138 -17.27569 -17.08853 -16.56718 -16.11478 -15.49349 -15.30349 -15.15535 -14.62079 -14.47601 -14.17473 -14.06148 -13.92867 -13.79996 -13.32377 -13.27555 -13.02336 -12.89509 -12.83043 -12.67338 -12.25019 -12.12916 -12.03541 -11.72961 -11.54626 -11.01635 -10.82786 -10.66619 -9.77300 -9.42540 -9.06794 -7.94245 -5.24531 0.32191 1.10331 1.50261 1.51437 1.60662 1.80796 2.06177 2.29376 2.57363 3.37403 3.42747 3.62906 3.82018 3.87722 3.89124 3.94787 4.18843 4.29956 4.33065 4.48195 4.51385 4.60253 4.63550 4.73993 4.74784 4.81282 4.85673 4.89588 5.11176 5.13004 5.21470 5.27180 5.32383 5.35006 5.55057 5.56617 6.03191 6.26335 6.52706 7.14790 7.34173 8.05054 8.29576 9.28994 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.005323 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.581975 B = 5258.488947 C = 6601.209998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.071 3.929 3 O -0.178 6.178 4 C -0.030 4.030 5 C -0.215 4.215 6 C -0.271 4.271 7 C 0.598 3.402 8 O -0.566 6.566 9 N -0.604 5.604 10 C 0.089 3.911 11 C 0.163 3.837 12 H 0.071 0.929 13 N -0.724 5.724 14 C -0.241 4.241 15 H 0.082 0.918 16 C -0.069 4.069 17 N -0.968 5.968 18 Si 0.969 3.031 19 H -0.263 1.263 20 H -0.295 1.295 21 H -0.297 1.297 22 C -0.125 4.125 23 C 0.137 3.863 24 H 0.088 0.912 25 C -0.154 4.154 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.246 0.754 30 H 0.162 0.838 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.375 0.625 34 H 0.251 0.749 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.598 7.513 -6.389 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.017 3.983 3 O -0.074 6.074 4 C -0.095 4.095 5 C -0.234 4.234 6 C -0.275 4.275 7 C 0.389 3.611 8 O -0.449 6.449 9 N -0.337 5.337 10 C -0.037 4.037 11 C 0.053 3.947 12 H 0.089 0.911 13 N -0.363 5.363 14 C -0.373 4.373 15 H 0.100 0.900 16 C -0.261 4.261 17 N -0.618 5.618 18 Si 0.798 3.202 19 H -0.188 1.188 20 H -0.223 1.223 21 H -0.224 1.224 22 C -0.163 4.163 23 C 0.034 3.966 24 H 0.106 0.894 25 C -0.211 4.211 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.262 0.738 30 H 0.180 0.820 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.208 0.792 34 H 0.060 0.940 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.197 7.750 -6.523 17.440 hybrid contribution 1.589 -0.069 0.433 1.649 sum -12.608 7.680 -6.091 15.970 Atomic orbital electron populations 1.20632 0.82043 1.05484 1.05007 1.23212 0.95126 0.82826 0.97105 1.83768 1.17677 1.34642 1.71267 1.24574 0.83629 0.96459 1.04859 1.23590 0.96996 0.95738 1.07109 1.21281 0.94561 0.93691 1.18001 1.17078 0.84391 0.83828 0.75757 1.90628 1.16669 1.84006 1.53615 1.48390 1.06876 1.06574 1.71830 1.23187 0.78540 1.01242 1.00709 1.21410 0.86466 0.91815 0.95017 0.91068 1.42520 1.03336 1.80051 1.10422 1.19674 0.86090 1.36060 0.95466 0.90041 1.25507 1.01450 1.03114 0.96067 1.69820 1.29914 1.55990 1.06095 0.85147 0.80178 0.76804 0.78057 1.18757 1.22283 1.22416 1.23061 0.92657 1.00076 1.00545 1.22000 0.95568 0.78852 1.00152 0.89396 1.22069 0.97726 1.02685 0.98623 0.88570 0.87973 0.88611 0.73848 0.82044 0.92452 0.91531 0.79224 0.94049 0.88197 0.91596 0.90870 0.89823 0.94168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.89 71.24 0.70 -0.82 16 2 C 0.07 1.88 7.37 25.26 0.19 2.06 16 3 O -0.18 -4.35 10.52 4.43 0.05 -4.30 16 4 C -0.03 -0.69 12.03 66.89 0.80 0.11 16 5 C -0.22 -6.20 9.42 23.65 0.22 -5.97 16 6 C -0.27 -8.47 6.24 -18.99 -0.12 -8.58 16 7 C 0.60 20.34 7.62 86.65 0.66 21.01 16 8 O -0.57 -20.07 12.50 -4.10 -0.05 -20.12 16 9 N -0.60 -19.80 3.24 -792.01 -2.57 -22.37 16 10 C 0.09 3.07 4.75 86.73 0.41 3.49 16 11 C 0.16 5.95 3.59 46.18 0.17 6.12 16 12 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 13 N -0.72 -33.93 5.18 -317.32 -1.64 -35.58 16 14 C -0.24 -12.44 9.98 84.04 0.84 -11.60 16 15 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 16 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 17 N -0.97 -56.97 13.06 21.65 0.28 -56.69 16 18 Si 0.97 43.93 29.55 68.60 2.03 45.95 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 22 C -0.12 -3.82 6.11 31.99 0.20 -3.62 16 23 C 0.14 3.95 3.77 45.47 0.17 4.12 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 C -0.15 -4.19 8.71 71.98 0.63 -3.57 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.10 2.21 6.49 -2.39 -0.02 2.19 16 29 H 0.25 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.16 4.89 4.87 -2.91 -0.01 4.88 16 31 H 0.06 2.22 6.72 -2.39 -0.02 2.21 16 32 H 0.07 2.21 7.04 -2.38 -0.02 2.19 16 33 H 0.38 19.23 7.71 -92.71 -0.72 18.52 16 34 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 35 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.07 2.19 7.92 -2.39 -0.02 2.17 16 37 H 0.07 2.20 5.88 -2.39 -0.01 2.19 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -64.65 318.16 3.79 -60.86 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.36 Total: 32.77 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 5.34 Total: -0.53 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -3.93 Total: -114.63 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.00 Total: -24.42 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.65 3.79 -60.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987981843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.203 kcal (2) G-P(sol) polarization free energy of solvation -64.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds