Wall clock time and date at job start Tue Mar 31 2020 01:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40357 * 126.64760 * 2 1 4 4 C 1.35139 * 107.11426 * 180.02562 * 3 2 1 5 5 O 1.33930 * 108.76462 * 0.02562 * 4 3 2 6 6 C 1.34906 * 109.38535 * 359.97438 * 5 4 3 7 7 C 1.46665 * 125.98520 * 180.26564 * 6 5 4 8 8 O 1.21696 * 119.99888 * 179.69345 * 7 6 5 9 9 N 1.34779 * 119.99984 * 359.69141 * 7 6 5 10 10 C 1.47425 * 125.64457 * 0.02562 * 9 7 6 11 11 C 1.54916 * 104.82835 * 204.09098 * 10 9 7 12 12 H 1.09000 * 111.00259 * 81.06521 * 11 10 9 13 13 N 1.46500 * 111.00381 * 204.91817 * 11 10 9 14 14 C 1.36936 * 120.00266 * 273.54673 * 13 11 10 15 15 H 1.08007 * 119.99468 * 0.02562 * 14 13 11 16 16 C 1.38806 * 120.00139 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99916 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00197 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47280 * 89.99802 * 18 16 14 20 20 H 1.48496 * 109.47348 * 210.00110 * 18 16 14 21 21 H 1.48505 * 109.47142 * 330.00153 * 18 16 14 22 22 C 1.55165 * 101.58084 * 322.99236 * 11 10 9 23 23 C 1.47018 * 125.64432 * 179.71674 * 9 7 6 24 24 H 1.09001 * 109.88669 * 59.56457 * 23 9 7 25 25 C 1.52999 * 109.88443 * 298.39005 * 23 9 7 26 26 H 1.09006 * 109.46939 * 269.95405 * 1 2 3 27 27 H 1.08996 * 109.46989 * 29.95032 * 1 2 3 28 28 H 1.08997 * 109.47371 * 149.95518 * 1 2 3 29 29 H 1.08003 * 126.44764 * 0.02562 * 3 2 1 30 30 H 1.08004 * 125.61690 * 180.02562 * 4 3 2 31 31 H 1.08998 * 110.37098 * 322.92786 * 10 9 7 32 32 H 1.08999 * 110.36548 * 85.14731 * 10 9 7 33 33 H 0.97004 * 119.99880 * 93.54340 * 13 11 10 34 34 H 0.96996 * 120.00008 * 179.97438 * 17 16 14 35 35 H 1.08997 * 110.71543 * 153.86859 * 22 11 10 36 36 H 1.09003 * 110.71945 * 276.95985 * 22 11 10 37 37 H 1.09003 * 109.46593 * 61.45684 * 25 23 9 38 38 H 1.08998 * 109.47267 * 181.46004 * 25 23 9 39 39 H 1.08994 * 109.47330 * 301.45928 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1261 0.0000 4 6 3.6184 0.6743 -0.0006 5 8 3.6004 -0.6649 -0.0015 6 6 2.3220 -1.0956 -0.0010 7 6 1.8841 -2.4953 0.0039 8 8 0.6966 -2.7614 0.0095 9 7 2.7970 -3.4870 0.0020 10 6 4.2603 -3.3076 -0.0042 11 6 4.8176 -4.6175 -0.6153 12 1 4.7574 -4.5974 -1.7035 13 7 6.1927 -4.8603 -0.1720 14 6 7.2408 -4.3045 -0.8558 15 1 7.0537 -3.6867 -1.7217 16 6 8.5437 -4.5350 -0.4360 17 7 9.5511 -4.0011 -1.0936 18 14 8.8672 -5.6028 1.0622 19 1 9.0170 -7.0181 0.6383 20 1 10.1136 -5.1519 1.7316 21 1 7.7279 -5.4873 2.0077 22 6 3.8477 -5.6745 -0.0240 23 6 2.4983 -4.9264 0.0122 24 1 1.9075 -5.1888 -0.8655 25 6 1.7328 -5.2900 1.2861 26 1 -0.3633 -0.0008 1.0277 27 1 -0.3633 0.8904 -0.5130 28 1 -0.3634 -0.8895 -0.5145 29 1 2.0307 2.1595 0.0004 30 1 4.5047 1.2914 -0.0003 31 1 4.5352 -2.4534 -0.6228 32 1 4.6303 -3.1739 1.0123 33 1 6.3606 -5.4148 0.6061 34 1 10.4615 -4.1619 -0.8000 35 1 3.7893 -6.5492 -0.6718 36 1 4.1560 -5.9609 0.9815 37 1 0.7872 -4.7482 1.3088 38 1 1.5376 -6.3623 1.2991 39 1 2.3282 -5.0186 2.1577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988097758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:06 Heat of formation + Delta-G solvation = -2.624637 kcal Electronic energy + Delta-G solvation = -22074.110059 eV Core-core repulsion = 18790.951994 eV Total energy + Delta-G solvation = -3283.158065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.65670 -39.82801 -37.55297 -34.49394 -33.98031 -32.00052 -31.56418 -30.11358 -28.97468 -27.52168 -25.55592 -23.96402 -22.97727 -21.67875 -20.56136 -20.25876 -19.05790 -17.76110 -17.25720 -16.59757 -16.21023 -15.83827 -15.10911 -14.47022 -14.06718 -13.92941 -13.70729 -13.37672 -13.15325 -13.10842 -12.95371 -12.64161 -12.51512 -12.42488 -12.33360 -11.88310 -11.77560 -11.43510 -11.17380 -10.83789 -10.70862 -10.42626 -10.11033 -9.92377 -9.70022 -9.67865 -9.08140 -8.72617 -8.33661 -7.42228 -5.86637 -3.24819 1.13392 2.34680 2.73858 3.24170 3.27585 3.31110 3.33829 3.39997 4.49870 4.52943 4.76626 4.78956 4.94425 5.02088 5.09918 5.33360 5.43628 5.47929 5.52129 5.53521 5.64099 5.67312 5.69929 5.71359 5.89432 5.98320 6.00797 6.09974 6.13701 6.20587 6.33399 6.37852 6.42846 6.57007 6.71090 6.96240 7.63109 7.87583 8.18350 8.31905 9.08394 9.80436 9.98475 11.31042 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.005365 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.376975 B = 5217.895727 C = 6352.339841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.096 4.096 3 C -0.231 4.231 4 C -0.003 4.003 5 O -0.150 6.150 6 C -0.077 4.077 7 C 0.614 3.386 8 O -0.532 6.532 9 N -0.601 5.601 10 C 0.075 3.925 11 C 0.178 3.822 12 H 0.074 0.926 13 N -0.736 5.736 14 C -0.253 4.253 15 H 0.092 0.908 16 C 0.011 3.989 17 N -0.929 5.929 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.140 4.140 23 C 0.140 3.860 24 H 0.077 0.923 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.209 0.791 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.364 0.636 34 H 0.261 0.739 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.741 5.313 3.645 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.250 4.250 4 C -0.074 4.074 5 O -0.044 6.044 6 C -0.129 4.129 7 C 0.403 3.597 8 O -0.412 6.412 9 N -0.333 5.333 10 C -0.051 4.051 11 C 0.066 3.934 12 H 0.092 0.908 13 N -0.377 5.377 14 C -0.382 4.382 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.576 5.576 18 Si 0.713 3.287 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.203 1.203 22 C -0.179 4.179 23 C 0.037 3.963 24 H 0.096 0.904 25 C -0.219 4.219 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.104 0.896 29 H 0.171 0.829 30 H 0.225 0.775 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.198 0.802 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.965 5.103 3.470 17.116 hybrid contribution 0.578 -0.268 1.149 1.314 sum -15.387 4.835 4.619 16.777 Atomic orbital electron populations 1.20376 0.88449 1.03327 1.02597 1.20572 0.97460 0.91004 1.00817 1.21686 0.92448 0.99930 1.10935 1.24463 0.99914 0.81162 1.01818 1.84304 1.28007 1.22232 1.69887 1.21836 0.81660 0.94636 1.14789 1.16199 0.84811 0.81415 0.77260 1.90788 1.15382 1.82345 1.52649 1.48509 1.07999 1.05935 1.70877 1.23549 0.76769 1.02522 1.02211 1.21264 0.84302 0.90253 0.97564 0.90829 1.42654 1.00622 1.60328 1.34115 1.19066 0.84494 1.25414 1.09233 0.88982 1.24666 0.95382 0.99926 0.98617 1.69697 0.98393 1.48089 1.41411 0.86579 0.77466 0.80941 0.83690 1.20904 1.21630 1.20274 1.23057 0.93522 0.98772 1.02514 1.21542 0.96717 0.79374 0.98688 0.90447 1.22139 1.01169 1.01566 0.97073 0.91124 0.91745 0.89603 0.82928 0.77472 0.89951 0.91262 0.80202 0.92895 0.89819 0.90509 0.91370 0.91670 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.81 36.01 0.35 -0.71 16 2 C -0.10 -1.31 6.20 -104.44 -0.65 -1.96 16 3 C -0.23 -2.65 10.83 -39.89 -0.43 -3.08 16 4 C 0.00 -0.04 12.08 29.63 0.36 0.32 16 5 O -0.15 -2.30 7.86 5.02 0.04 -2.26 16 6 C -0.08 -1.22 6.93 -36.79 -0.25 -1.47 16 7 C 0.61 10.32 7.61 -12.86 -0.10 10.22 16 8 O -0.53 -9.41 13.79 5.19 0.07 -9.34 16 9 N -0.60 -9.72 3.06 -164.54 -0.50 -10.22 16 10 C 0.07 1.31 5.86 -2.53 -0.01 1.29 16 11 C 0.18 3.23 3.69 -65.77 -0.24 2.99 16 12 H 0.07 1.39 8.13 -51.93 -0.42 0.96 16 13 N -0.74 -16.33 5.08 -51.34 -0.26 -16.59 16 14 C -0.25 -6.76 10.47 -15.06 -0.16 -6.92 16 15 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 16 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 17 N -0.93 -28.19 13.97 55.49 0.78 -27.41 16 18 Si 0.88 21.19 27.73 -169.99 -4.71 16.48 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 22 C -0.14 -2.03 6.11 -24.88 -0.15 -2.18 16 23 C 0.14 1.99 3.46 -66.95 -0.23 1.76 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 25 C -0.16 -2.08 9.11 37.16 0.34 -1.74 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.14 6.46 -51.93 -0.34 0.80 16 29 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.21 1.67 8.06 -52.48 -0.42 1.24 16 31 H 0.08 1.52 6.23 -51.93 -0.32 1.20 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.36 7.92 5.57 -40.82 -0.23 7.70 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.10 7.70 -51.93 -0.40 0.70 16 37 H 0.07 0.96 6.89 -51.93 -0.36 0.60 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -31.38 320.31 -6.50 -37.88 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.46 Total: 7.92 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.28 Total: -1.29 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.01 Total: -54.23 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.11 Total: -11.60 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.48 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.38 -6.50 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988097758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.260 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds