Wall clock time and date at job start Tue Mar 31 2020 00:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34172 * 125.43970 * 2 1 4 4 C 1.47022 * 105.95366 * 180.12791 * 3 2 1 5 5 C 1.47380 * 127.19346 * 179.89739 * 4 3 2 6 6 O 1.21614 * 120.00143 * 8.17798 * 5 4 3 7 7 N 1.34780 * 119.99838 * 188.18452 * 5 4 3 8 8 C 1.47415 * 125.64959 * 358.31351 * 7 5 4 9 9 C 1.54918 * 104.83245 * 155.90945 * 8 7 5 10 10 H 1.08997 * 111.00089 * 278.89680 * 9 8 7 11 11 N 1.46499 * 111.00397 * 155.08446 * 9 8 7 12 12 C 1.36933 * 119.99639 * 86.45544 * 11 9 8 13 13 H 1.08001 * 120.00567 * 359.97438 * 12 11 9 14 14 C 1.38822 * 119.99733 * 179.97438 * 12 11 9 15 15 N 1.31617 * 119.99865 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99931 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47143 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47024 * 299.99766 * 16 14 12 19 19 H 1.48496 * 109.47448 * 59.99908 * 16 14 12 20 20 C 1.55158 * 101.58002 * 37.00683 * 9 8 7 21 21 C 1.47022 * 125.64666 * 178.35876 * 7 5 4 22 22 H 1.09000 * 109.88209 * 61.44605 * 21 7 5 23 23 C 1.53007 * 109.88167 * 300.44031 * 21 7 5 24 24 C 1.36417 * 105.61529 * 359.63406 * 4 3 2 25 25 O 1.33649 * 108.39545 * 0.22090 * 24 4 3 26 26 H 1.08997 * 109.47469 * 180.31295 * 1 2 3 27 27 H 1.08996 * 109.46688 * 300.31492 * 1 2 3 28 28 H 1.09003 * 109.47143 * 60.31157 * 1 2 3 29 29 H 1.08000 * 127.02920 * 0.02562 * 3 2 1 30 30 H 1.09002 * 110.36990 * 37.07499 * 8 7 5 31 31 H 1.08997 * 110.46408 * 274.79353 * 8 7 5 32 32 H 0.97001 * 119.99797 * 266.44966 * 11 9 8 33 33 H 0.97005 * 119.99979 * 359.97438 * 15 14 12 34 34 H 1.09005 * 110.71639 * 82.86522 * 20 9 8 35 35 H 1.08995 * 110.71852 * 206.13254 * 20 9 8 36 36 H 1.08994 * 109.47118 * 61.45397 * 23 21 7 37 37 H 1.08999 * 109.47142 * 181.45456 * 23 21 7 38 38 H 1.08999 * 109.46964 * 301.45391 * 23 21 7 39 39 H 1.08002 * 125.80170 * 180.22745 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6027 -0.0032 5 6 4.9025 1.4123 -0.0065 6 8 4.8384 2.6175 0.1430 7 7 6.0999 0.8170 -0.1753 8 6 6.3248 -0.6315 -0.3315 9 6 7.6729 -0.7444 -1.0863 10 1 7.5344 -0.5973 -2.1574 11 7 8.3205 -2.0302 -0.8151 12 6 8.0080 -3.1274 -1.5724 13 1 7.2838 -3.0450 -2.3694 14 6 8.6221 -4.3456 -1.3157 15 7 9.5050 -4.4459 -0.3448 16 14 8.1963 -5.8422 -2.3493 17 1 8.9824 -7.0101 -1.8766 18 1 6.7466 -6.1369 -2.2199 19 1 8.5209 -5.5697 -3.7724 20 6 8.4779 0.4264 -0.4628 21 6 7.3981 1.5046 -0.2332 22 1 7.5842 2.0249 0.7064 23 6 7.4063 2.5042 -1.3916 24 6 3.5789 -0.7583 0.0036 25 8 2.2852 -1.0935 0.0054 26 1 -0.3634 -1.0276 0.0056 27 1 -0.3632 0.5187 0.8871 28 1 -0.3633 0.5090 -0.8928 29 1 1.9597 2.1230 0.0004 30 1 5.5228 -1.0788 -0.9187 31 1 6.3945 -1.1137 0.6435 32 1 8.9708 -2.1042 -0.0991 33 1 9.7269 -3.6684 0.1911 34 1 8.9284 0.1242 0.4826 35 1 9.2386 0.7839 -1.1568 36 1 6.6329 3.2548 -1.2292 37 1 8.3799 2.9912 -1.4444 38 1 7.2118 1.9785 -2.3264 39 1 4.4102 -1.4478 0.0071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988702349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:11 Heat of formation + Delta-G solvation = 0.743041 kcal Electronic energy + Delta-G solvation = -21817.769963 eV Core-core repulsion = 18534.757931 eV Total energy + Delta-G solvation = -3283.012032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.57265 -39.88804 -37.39322 -34.54630 -33.20391 -32.74630 -31.45659 -30.89482 -28.19088 -26.84087 -25.72560 -24.26393 -23.39066 -21.44662 -20.78566 -20.41722 -18.92608 -17.59009 -16.97692 -16.44293 -16.34275 -15.58047 -15.39200 -14.61044 -14.30898 -13.82876 -13.68013 -13.40077 -13.29067 -13.28593 -13.21056 -12.92148 -12.72071 -12.50016 -12.08746 -11.96455 -11.77546 -11.05846 -11.00615 -10.73757 -10.61169 -10.32277 -10.06408 -9.82463 -9.72890 -9.30481 -9.09630 -8.60579 -8.45360 -7.24557 -6.24600 -3.28067 1.41618 2.00310 2.79371 3.12418 3.45281 3.47360 3.48222 3.65307 4.45019 4.55954 4.62586 4.84010 4.94283 4.98165 5.13324 5.17785 5.23741 5.33581 5.39132 5.46568 5.51200 5.53670 5.69844 5.70757 5.74320 5.89938 5.93294 5.98772 6.05136 6.16334 6.27744 6.31789 6.40031 6.56938 6.69653 7.00340 7.65621 7.70951 8.34856 8.60880 9.03719 9.90529 10.03567 11.22938 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.005420 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.867592 B = 5164.998011 C = 6806.394287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.023 4.023 3 C -0.164 4.164 4 C -0.231 4.231 5 C 0.600 3.400 6 O -0.548 6.548 7 N -0.605 5.605 8 C 0.058 3.942 9 C 0.180 3.820 10 H 0.067 0.933 11 N -0.724 5.724 12 C -0.344 4.344 13 H 0.067 0.933 14 C -0.037 4.037 15 N -0.937 5.937 16 Si 1.079 2.921 17 H -0.284 1.284 18 H -0.294 1.294 19 H -0.294 1.294 20 C -0.138 4.138 21 C 0.141 3.859 22 H 0.072 0.928 23 C -0.162 4.162 24 C 0.014 3.986 25 O -0.173 6.173 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.371 0.629 33 H 0.256 0.744 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.439 9.790 0.306 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.236 4.236 5 C 0.391 3.609 6 O -0.428 6.428 7 N -0.339 5.339 8 C -0.068 4.068 9 C 0.068 3.932 10 H 0.085 0.915 11 N -0.365 5.365 12 C -0.474 4.474 13 H 0.085 0.915 14 C -0.235 4.235 15 N -0.582 5.582 16 Si 0.909 3.091 17 H -0.209 1.209 18 H -0.221 1.221 19 H -0.221 1.221 20 C -0.176 4.176 21 C 0.038 3.962 22 H 0.090 0.910 23 C -0.220 4.220 24 C -0.056 4.056 25 O -0.069 6.069 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.174 0.826 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.205 0.795 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.469 8.523 -0.017 15.104 hybrid contribution -0.011 1.721 0.461 1.782 sum -12.480 10.245 0.444 16.153 Atomic orbital electron populations 1.20302 0.84859 1.04086 1.03587 1.22312 0.94173 0.83886 1.06742 1.22398 0.89951 0.99516 1.06544 1.21430 0.94446 0.93294 1.14400 1.16903 0.81243 0.86417 0.76380 1.90725 1.86619 1.14144 1.51286 1.48419 1.05452 1.08928 1.71084 1.23837 1.02141 0.79305 1.01501 1.21204 0.89199 0.85870 0.96940 0.91473 1.42340 1.48992 1.05040 1.40118 1.20039 1.23826 0.89827 1.13745 0.91484 1.25804 0.97173 0.99875 1.00698 1.70901 1.34003 1.32248 1.21007 0.83266 0.75446 0.75752 0.74668 1.20940 1.22091 1.22106 1.23002 0.97045 0.95528 1.02048 1.21483 0.82227 0.93563 0.98913 0.90980 1.22140 1.02354 0.99400 0.98060 1.25665 0.84044 0.96341 0.99535 1.83788 1.16742 1.35412 1.70951 0.90434 0.89684 0.89680 0.82594 0.90567 0.90882 0.79519 0.93246 0.90620 0.89920 0.91383 0.91811 0.92403 0.75650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.40 36.01 0.37 -0.17 16 2 C -0.02 -0.28 7.28 -35.74 -0.26 -0.54 16 3 C -0.16 -2.27 10.91 -37.46 -0.41 -2.68 16 4 C -0.23 -3.65 6.25 -103.27 -0.65 -4.29 16 5 C 0.60 10.49 7.61 -12.54 -0.10 10.39 16 6 O -0.55 -10.80 15.95 5.26 0.08 -10.72 16 7 N -0.61 -9.85 3.08 -164.29 -0.51 -10.35 16 8 C 0.06 0.96 5.00 -2.53 -0.01 0.95 16 9 C 0.18 3.29 3.69 -65.78 -0.24 3.05 16 10 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 11 N -0.72 -16.46 5.27 -51.34 -0.27 -16.73 16 12 C -0.34 -8.91 9.98 -15.06 -0.15 -9.06 16 13 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 14 C -0.04 -1.01 5.50 -17.43 -0.10 -1.10 16 15 N -0.94 -27.45 13.70 55.49 0.76 -26.69 16 16 Si 1.08 24.55 29.92 -169.99 -5.09 19.47 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 20 C -0.14 -2.10 6.12 -24.90 -0.15 -2.25 16 21 C 0.14 2.12 3.49 -66.95 -0.23 1.89 16 22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 23 C -0.16 -2.25 9.06 37.16 0.34 -1.91 16 24 C 0.01 0.20 10.47 30.08 0.31 0.51 16 25 O -0.17 -2.41 10.52 7.66 0.08 -2.33 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.08 1.23 5.31 -51.93 -0.28 0.95 16 31 H 0.07 1.24 8.05 -51.93 -0.42 0.83 16 32 H 0.37 8.72 6.54 -40.82 -0.27 8.46 16 33 H 0.26 7.34 6.77 -40.82 -0.28 7.07 16 34 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 35 H 0.08 1.17 7.83 -51.93 -0.41 0.77 16 36 H 0.07 1.05 6.79 -51.93 -0.35 0.69 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.23 3.09 4.78 -52.49 -0.25 2.84 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -31.67 322.46 -6.60 -38.27 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.25 Total: 9.46 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.27 Total: -5.23 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.02 Total: -53.78 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.16 Total: -13.05 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.47 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.67 -6.60 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988702349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.010 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds