Wall clock time and date at job start Tue Mar 31 2020 00:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34172 * 125.43970 * 2 1 4 4 C 1.47022 * 105.95366 * 180.12791 * 3 2 1 5 5 C 1.47380 * 127.19346 * 179.89739 * 4 3 2 6 6 O 1.21614 * 120.00143 * 8.17798 * 5 4 3 7 7 N 1.34780 * 119.99838 * 188.18452 * 5 4 3 8 8 C 1.47415 * 125.64959 * 358.31351 * 7 5 4 9 9 C 1.54918 * 104.83245 * 155.90945 * 8 7 5 10 10 H 1.08997 * 111.00089 * 278.89680 * 9 8 7 11 11 N 1.46499 * 111.00397 * 155.08446 * 9 8 7 12 12 C 1.36933 * 119.99639 * 86.45544 * 11 9 8 13 13 H 1.08001 * 120.00567 * 359.97438 * 12 11 9 14 14 C 1.38822 * 119.99733 * 179.97438 * 12 11 9 15 15 N 1.31617 * 119.99865 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99931 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47143 * 180.02562 * 16 14 12 18 18 H 1.48498 * 109.47024 * 299.99766 * 16 14 12 19 19 H 1.48496 * 109.47448 * 59.99908 * 16 14 12 20 20 C 1.55158 * 101.58002 * 37.00683 * 9 8 7 21 21 C 1.47022 * 125.64666 * 178.35876 * 7 5 4 22 22 H 1.09000 * 109.88209 * 61.44605 * 21 7 5 23 23 C 1.53007 * 109.88167 * 300.44031 * 21 7 5 24 24 C 1.36417 * 105.61529 * 359.63406 * 4 3 2 25 25 O 1.33649 * 108.39545 * 0.22090 * 24 4 3 26 26 H 1.08997 * 109.47469 * 180.31295 * 1 2 3 27 27 H 1.08996 * 109.46688 * 300.31492 * 1 2 3 28 28 H 1.09003 * 109.47143 * 60.31157 * 1 2 3 29 29 H 1.08000 * 127.02920 * 0.02562 * 3 2 1 30 30 H 1.09002 * 110.36990 * 37.07499 * 8 7 5 31 31 H 1.08997 * 110.46408 * 274.79353 * 8 7 5 32 32 H 0.97001 * 119.99797 * 266.44966 * 11 9 8 33 33 H 0.97005 * 119.99979 * 359.97438 * 15 14 12 34 34 H 1.09005 * 110.71639 * 82.86522 * 20 9 8 35 35 H 1.08995 * 110.71852 * 206.13254 * 20 9 8 36 36 H 1.08994 * 109.47118 * 61.45397 * 23 21 7 37 37 H 1.08999 * 109.47142 * 181.45456 * 23 21 7 38 38 H 1.08999 * 109.46964 * 301.45391 * 23 21 7 39 39 H 1.08002 * 125.80170 * 180.22745 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6027 -0.0032 5 6 4.9025 1.4123 -0.0065 6 8 4.8384 2.6175 0.1430 7 7 6.0999 0.8170 -0.1753 8 6 6.3248 -0.6315 -0.3315 9 6 7.6729 -0.7444 -1.0863 10 1 7.5344 -0.5973 -2.1574 11 7 8.3205 -2.0302 -0.8151 12 6 8.0080 -3.1274 -1.5724 13 1 7.2838 -3.0450 -2.3694 14 6 8.6221 -4.3456 -1.3157 15 7 9.5050 -4.4459 -0.3448 16 14 8.1963 -5.8422 -2.3493 17 1 8.9824 -7.0101 -1.8766 18 1 6.7466 -6.1369 -2.2199 19 1 8.5209 -5.5697 -3.7724 20 6 8.4779 0.4264 -0.4628 21 6 7.3981 1.5046 -0.2332 22 1 7.5842 2.0249 0.7064 23 6 7.4063 2.5042 -1.3916 24 6 3.5789 -0.7583 0.0036 25 8 2.2852 -1.0935 0.0054 26 1 -0.3634 -1.0276 0.0056 27 1 -0.3632 0.5187 0.8871 28 1 -0.3633 0.5090 -0.8928 29 1 1.9597 2.1230 0.0004 30 1 5.5228 -1.0788 -0.9187 31 1 6.3945 -1.1137 0.6435 32 1 8.9708 -2.1042 -0.0991 33 1 9.7269 -3.6684 0.1911 34 1 8.9284 0.1242 0.4826 35 1 9.2386 0.7839 -1.1568 36 1 6.6329 3.2548 -1.2292 37 1 8.3799 2.9912 -1.4444 38 1 7.2118 1.9785 -2.3264 39 1 4.4102 -1.4478 0.0071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988702349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:09 Heat of formation + Delta-G solvation = -19.082524 kcal Electronic energy + Delta-G solvation = -21818.629664 eV Core-core repulsion = 18534.757931 eV Total energy + Delta-G solvation = -3283.871733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.65651 -41.23674 -38.83503 -36.33482 -34.36131 -33.75222 -33.18568 -32.01161 -29.83387 -27.75792 -26.98692 -25.87011 -24.99298 -22.75870 -21.89734 -21.76008 -20.19009 -19.49615 -18.15870 -17.74928 -17.44079 -16.92215 -16.74647 -16.27191 -15.75040 -15.54000 -15.02725 -14.75265 -14.51883 -14.29502 -14.04659 -13.95868 -13.79632 -13.77327 -13.33418 -13.19743 -12.79894 -12.70927 -12.65216 -12.22053 -12.09355 -11.86099 -11.72359 -11.23500 -11.19582 -10.94004 -10.88232 -9.83115 -9.62173 -9.17121 -8.36424 -5.34138 0.23124 0.96605 1.62858 1.66994 1.71250 1.87177 1.94322 2.18219 2.72301 3.23691 3.37471 3.57179 3.62977 3.68599 3.81433 3.86918 3.98983 4.19436 4.29277 4.34354 4.38395 4.43725 4.57794 4.60476 4.70981 4.72687 4.78287 4.80953 4.91884 5.00135 5.06073 5.13527 5.24001 5.36498 5.39192 5.63040 5.95008 6.35197 6.52380 6.99277 7.07511 7.96888 8.07494 9.14937 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014588 B = 0.005420 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.867592 B = 5164.998011 C = 6806.394287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.009 4.009 3 C -0.187 4.187 4 C -0.255 4.255 5 C 0.597 3.403 6 O -0.576 6.576 7 N -0.603 5.603 8 C 0.070 3.930 9 C 0.174 3.826 10 H 0.062 0.938 11 N -0.733 5.733 12 C -0.334 4.334 13 H 0.071 0.929 14 C -0.094 4.094 15 N -0.974 5.974 16 Si 1.122 2.878 17 H -0.297 1.297 18 H -0.276 1.276 19 H -0.279 1.279 20 C -0.124 4.124 21 C 0.138 3.862 22 H 0.076 0.924 23 C -0.154 4.154 24 C 0.015 3.985 25 O -0.179 6.179 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.164 0.836 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.365 0.635 33 H 0.247 0.753 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.968 10.066 -0.346 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.057 4.057 3 C -0.207 4.207 4 C -0.259 4.259 5 C 0.389 3.611 6 O -0.457 6.457 7 N -0.336 5.336 8 C -0.055 4.055 9 C 0.063 3.937 10 H 0.080 0.920 11 N -0.375 5.375 12 C -0.466 4.466 13 H 0.089 0.911 14 C -0.286 4.286 15 N -0.621 5.621 16 Si 0.947 3.053 17 H -0.223 1.223 18 H -0.202 1.202 19 H -0.206 1.206 20 C -0.163 4.163 21 C 0.035 3.965 22 H 0.095 0.905 23 C -0.212 4.212 24 C -0.055 4.055 25 O -0.074 6.074 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.182 0.818 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.198 0.802 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -14.026 8.845 -0.684 16.596 hybrid contribution 0.393 1.726 0.666 1.891 sum -13.632 10.570 -0.018 17.250 Atomic orbital electron populations 1.20565 0.81356 1.05432 1.05434 1.23136 0.95878 0.82753 1.03943 1.22590 0.89312 1.00570 1.08220 1.21523 0.94739 0.93873 1.15781 1.17171 0.81852 0.86263 0.75856 1.90700 1.87029 1.15249 1.52762 1.48433 1.05803 1.08720 1.70645 1.23561 1.01223 0.79646 1.01065 1.21325 0.90240 0.85078 0.97017 0.91999 1.42435 1.49366 1.05936 1.39729 1.20347 1.22488 0.90580 1.13146 0.91112 1.27025 0.97347 1.02849 1.01418 1.70998 1.36267 1.32082 1.22758 0.82696 0.75935 0.72626 0.74038 1.22303 1.20227 1.20568 1.22917 0.97043 0.94094 1.02210 1.21608 0.81477 0.93651 0.99714 0.90547 1.22076 1.03267 0.98640 0.97176 1.25617 0.84599 0.95860 0.99423 1.83810 1.16576 1.36231 1.70830 0.89325 0.87740 0.87756 0.81797 0.90010 0.91291 0.80187 0.94249 0.90441 0.88413 0.92951 0.89276 0.92762 0.75417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.40 71.24 0.74 -0.13 16 2 C -0.01 -0.19 7.28 24.76 0.18 -0.01 16 3 C -0.19 -4.99 10.91 23.65 0.26 -4.73 16 4 C -0.25 -7.93 6.25 -18.99 -0.12 -8.05 16 5 C 0.60 20.76 7.61 86.65 0.66 21.42 16 6 O -0.58 -22.70 15.95 -4.08 -0.07 -22.77 16 7 N -0.60 -19.28 3.08 -791.94 -2.44 -21.72 16 8 C 0.07 2.29 5.00 86.86 0.43 2.73 16 9 C 0.17 6.21 3.69 46.39 0.17 6.38 16 10 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 11 N -0.73 -33.18 5.27 -316.36 -1.67 -34.85 16 12 C -0.33 -17.16 9.98 84.04 0.84 -16.32 16 13 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 14 C -0.09 -5.11 5.50 84.86 0.47 -4.65 16 15 N -0.97 -57.65 13.70 21.65 0.30 -57.35 16 16 Si 1.12 49.03 29.92 68.60 2.05 51.09 16 17 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 18 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 19 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 20 C -0.12 -3.62 6.12 31.78 0.19 -3.42 16 21 C 0.14 3.99 3.49 45.34 0.16 4.15 16 22 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 23 C -0.15 -4.07 9.06 71.98 0.65 -3.41 16 24 C 0.01 0.42 10.47 67.39 0.71 1.12 16 25 O -0.18 -4.72 10.52 4.49 0.05 -4.67 16 26 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.08 2.58 5.31 -2.39 -0.01 2.57 16 31 H 0.07 2.33 8.05 -2.39 -0.02 2.31 16 32 H 0.37 17.31 6.54 -92.71 -0.61 16.70 16 33 H 0.25 14.45 6.77 -92.70 -0.63 13.82 16 34 H 0.08 2.26 8.00 -2.38 -0.02 2.24 16 35 H 0.10 2.57 7.83 -2.39 -0.02 2.55 16 36 H 0.05 1.57 6.79 -2.39 -0.02 1.55 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.23 6.13 4.78 -2.91 -0.01 6.12 16 Total: -1.00 -67.62 322.46 4.17 -63.45 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.60 Total: 31.76 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.34 Total: -4.93 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -3.81 Total: -113.92 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.02 Total: -27.44 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.05 Total: 51.09 kcal Total: -67.62 4.17 -63.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988702349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.370 kcal (2) G-P(sol) polarization free energy of solvation -67.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds