Wall clock time and date at job start Tue Mar 31 2020 00:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34186 * 125.43567 * 2 1 4 4 C 1.47021 * 105.94983 * 179.97438 * 3 2 1 5 5 C 1.47379 * 127.19081 * 179.97438 * 4 3 2 6 6 O 1.21618 * 119.99935 * 8.52837 * 5 4 3 7 7 N 1.34777 * 120.00198 * 188.53062 * 5 4 3 8 8 C 1.47422 * 125.64518 * 358.52527 * 7 5 4 9 9 C 1.54912 * 104.83193 * 155.83743 * 8 7 5 10 10 H 1.08997 * 111.00635 * 155.11848 * 9 8 7 11 11 N 1.46499 * 111.00512 * 278.93871 * 9 8 7 12 12 C 1.36936 * 119.99870 * 273.54457 * 11 9 8 13 13 H 1.08001 * 119.99679 * 359.97438 * 12 11 9 14 14 C 1.38815 * 120.00217 * 180.27734 * 12 11 9 15 15 N 1.31613 * 119.99677 * 359.72130 * 14 12 11 16 16 Si 1.86800 * 120.00029 * 179.72325 * 14 12 11 17 17 H 1.48501 * 109.46998 * 89.99781 * 16 14 12 18 18 H 1.48494 * 109.47286 * 209.99565 * 16 14 12 19 19 H 1.48496 * 109.47177 * 329.99954 * 16 14 12 20 20 C 1.55155 * 101.58037 * 37.00849 * 9 8 7 21 21 C 1.47021 * 125.64754 * 178.48551 * 7 5 4 22 22 H 1.09000 * 109.88545 * 300.50894 * 21 7 5 23 23 C 1.52996 * 109.88436 * 61.67934 * 21 7 5 24 24 C 1.36418 * 105.61843 * 0.26019 * 4 3 2 25 25 O 1.33652 * 108.39484 * 359.57711 * 24 4 3 26 26 H 1.08997 * 109.46838 * 90.00251 * 1 2 3 27 27 H 1.08998 * 109.47204 * 210.00050 * 1 2 3 28 28 H 1.08998 * 109.47135 * 330.00803 * 1 2 3 29 29 H 1.07998 * 127.02272 * 0.02562 * 3 2 1 30 30 H 1.08997 * 110.37120 * 37.00191 * 8 7 5 31 31 H 1.08996 * 110.46501 * 274.71956 * 8 7 5 32 32 H 0.96994 * 120.00170 * 93.54386 * 11 9 8 33 33 H 0.97008 * 119.99704 * 180.02562 * 15 14 12 34 34 H 1.09003 * 110.72234 * 82.86299 * 20 9 8 35 35 H 1.09007 * 110.72527 * 206.13598 * 20 9 8 36 36 H 1.09004 * 109.47323 * 58.54016 * 23 21 7 37 37 H 1.09000 * 109.47555 * 178.54446 * 23 21 7 38 38 H 1.09003 * 109.47162 * 298.54289 * 23 21 7 39 39 H 1.07998 * 125.80235 * 179.73255 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8383 2.6170 0.1557 7 7 6.0998 0.8182 -0.1721 8 6 6.3242 -0.6292 -0.3398 9 6 7.6720 -0.7365 -1.0958 10 1 8.1534 -1.6951 -0.9022 11 7 7.4858 -0.5265 -2.5337 12 6 7.1519 -1.5803 -3.3419 13 1 7.0263 -2.5663 -2.9194 14 6 6.9811 -1.3825 -4.7052 15 7 7.1346 -0.1811 -5.2202 16 14 6.5332 -2.8215 -5.8089 17 1 5.0553 -2.9397 -5.8928 18 1 7.0895 -2.5956 -7.1670 19 1 7.0986 -4.0731 -5.2442 20 6 8.4776 0.4290 -0.4634 21 6 7.3981 1.5059 -0.2250 22 1 7.4040 2.2244 -1.0447 23 6 7.6618 2.2224 1.1008 24 6 3.5790 -0.7582 -0.0050 25 8 2.2852 -1.0935 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.9595 2.1231 0.0004 30 1 5.5219 -1.0717 -0.9302 31 1 6.3941 -1.1190 0.6314 32 1 7.5990 0.3589 -2.9132 33 1 7.0148 -0.0428 -6.1728 34 1 8.9282 0.1193 0.4796 35 1 9.2383 0.7919 -1.1547 36 1 7.6478 1.4975 1.9147 37 1 8.6369 2.7082 1.0637 38 1 6.8886 2.9721 1.2687 39 1 4.4103 -1.4476 -0.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988702352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:15 Heat of formation + Delta-G solvation = 1.090108 kcal Electronic energy + Delta-G solvation = -22123.517298 eV Core-core repulsion = 18840.520316 eV Total energy + Delta-G solvation = -3282.996982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.40854 -39.69192 -37.20313 -34.00170 -33.03709 -32.58576 -31.36776 -30.73057 -28.47988 -26.71340 -25.64377 -24.08888 -23.51279 -21.27133 -20.63353 -20.09903 -18.80282 -17.30963 -16.70945 -16.37862 -16.10657 -15.78893 -14.88169 -14.64467 -13.89138 -13.82782 -13.48866 -13.36486 -13.20604 -13.08161 -12.96476 -12.73684 -12.59758 -12.22714 -11.94328 -11.67453 -11.65028 -11.17854 -10.95751 -10.76983 -10.62335 -10.35447 -10.04236 -9.76934 -9.57890 -9.56710 -9.06881 -8.44252 -8.22954 -7.08144 -5.86051 -3.17005 1.59493 2.18094 2.93678 3.33721 3.37787 3.42626 3.44965 3.72309 4.49746 4.62799 4.78138 4.98372 5.06738 5.09177 5.28914 5.32609 5.36181 5.46163 5.54897 5.55290 5.62461 5.65993 5.75815 5.85144 5.86104 5.95230 6.09775 6.12440 6.19299 6.37114 6.42240 6.46395 6.55668 6.66813 6.82447 7.14804 7.59557 7.94010 8.30954 8.58365 9.42911 9.97896 10.32164 11.35810 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.006786 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.446202 B = 4124.882400 C = 5745.875431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.024 4.024 3 C -0.163 4.163 4 C -0.223 4.223 5 C 0.602 3.398 6 O -0.550 6.550 7 N -0.593 5.593 8 C 0.051 3.949 9 C 0.170 3.830 10 H 0.073 0.927 11 N -0.711 5.711 12 C -0.251 4.251 13 H 0.073 0.927 14 C -0.007 4.007 15 N -0.926 5.926 16 Si 0.906 3.094 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.280 1.280 20 C -0.137 4.137 21 C 0.140 3.860 22 H 0.075 0.925 23 C -0.160 4.160 24 C 0.011 3.989 25 O -0.176 6.176 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 -0.879 13.324 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.228 4.228 5 C 0.392 3.608 6 O -0.430 6.430 7 N -0.325 5.325 8 C -0.075 4.075 9 C 0.057 3.943 10 H 0.090 0.910 11 N -0.351 5.351 12 C -0.382 4.382 13 H 0.091 0.909 14 C -0.204 4.204 15 N -0.573 5.573 16 Si 0.737 3.263 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.206 1.206 20 C -0.176 4.176 21 C 0.037 3.963 22 H 0.093 0.907 23 C -0.218 4.218 24 C -0.058 4.058 25 O -0.072 6.072 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.173 0.827 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.221 0.779 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.316 -0.640 13.293 14.731 hybrid contribution -0.128 -0.318 -0.938 0.998 sum -6.444 -0.958 12.355 13.968 Atomic orbital electron populations 1.20282 0.84964 1.03851 1.03596 1.22258 0.94073 0.83908 1.07040 1.22424 0.90089 0.99469 1.06269 1.21430 0.94483 0.93332 1.13519 1.16839 0.81222 0.86359 0.76406 1.90716 1.86582 1.14204 1.51528 1.48188 1.05293 1.08572 1.70472 1.23774 1.03558 0.80847 0.99298 1.21325 0.90838 0.96361 0.85766 0.90957 1.42343 1.82738 1.09879 1.00153 1.19198 1.40489 0.89390 0.89076 0.90935 1.24774 1.02058 0.96590 0.96957 1.69667 1.55249 1.20200 1.12221 0.86212 0.78104 0.81629 0.80344 1.21655 1.21699 1.20599 1.23046 0.97227 0.96111 1.01183 1.21479 0.82273 0.94753 0.97756 0.90707 1.22140 1.01945 1.00907 0.96788 1.25481 0.83880 0.96283 1.00165 1.83739 1.16760 1.35427 1.71286 0.90074 0.90600 0.89427 0.82678 0.89519 0.92274 0.77947 0.93319 0.90602 0.89669 0.92879 0.91974 0.91479 0.75969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.40 36.01 0.37 -0.25 16 2 C -0.02 -0.33 7.28 -35.73 -0.26 -0.59 16 3 C -0.16 -2.56 10.91 -37.45 -0.41 -2.97 16 4 C -0.22 -3.93 6.25 -103.27 -0.65 -4.57 16 5 C 0.60 11.76 7.65 -12.54 -0.10 11.67 16 6 O -0.55 -12.10 15.98 5.26 0.08 -12.01 16 7 N -0.59 -10.54 3.06 -164.29 -0.50 -11.04 16 8 C 0.05 0.83 5.00 -2.53 -0.01 0.82 16 9 C 0.17 3.01 3.69 -65.78 -0.24 2.77 16 10 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 11 N -0.71 -16.67 5.27 -51.35 -0.27 -16.94 16 12 C -0.25 -6.53 9.98 -15.06 -0.15 -6.68 16 13 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 15 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 16 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.14 -2.06 6.05 -24.89 -0.15 -2.21 16 21 C 0.14 2.33 3.46 -66.95 -0.23 2.09 16 22 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 23 C -0.16 -2.28 9.10 37.16 0.34 -1.94 16 24 C 0.01 0.17 10.47 30.08 0.31 0.49 16 25 O -0.18 -2.62 10.52 7.66 0.08 -2.54 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.16 2.26 8.06 -52.49 -0.42 1.83 16 30 H 0.09 1.51 5.31 -51.93 -0.28 1.23 16 31 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 32 H 0.39 10.00 7.81 -40.82 -0.32 9.68 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.08 0.93 7.85 -51.93 -0.41 0.53 16 35 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.10 6.83 -51.93 -0.35 0.74 16 39 H 0.22 2.94 4.77 -52.49 -0.25 2.69 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -32.67 324.46 -6.66 -39.33 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.38 Total: 10.06 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.27 Total: -1.68 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.05 Total: -54.75 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.16 Total: -14.56 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.67 -6.66 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988702352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.416 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds