Wall clock time and date at job start Tue Mar 31 2020 00:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34186 * 125.43567 * 2 1 4 4 C 1.47021 * 105.94983 * 179.97438 * 3 2 1 5 5 C 1.47379 * 127.19081 * 179.97438 * 4 3 2 6 6 O 1.21618 * 119.99935 * 8.52837 * 5 4 3 7 7 N 1.34777 * 120.00198 * 188.53062 * 5 4 3 8 8 C 1.47422 * 125.64518 * 358.52527 * 7 5 4 9 9 C 1.54912 * 104.83193 * 155.83743 * 8 7 5 10 10 H 1.08997 * 111.00635 * 155.11848 * 9 8 7 11 11 N 1.46499 * 111.00512 * 278.93871 * 9 8 7 12 12 C 1.36936 * 119.99870 * 273.54457 * 11 9 8 13 13 H 1.08001 * 119.99679 * 359.97438 * 12 11 9 14 14 C 1.38815 * 120.00217 * 180.27734 * 12 11 9 15 15 N 1.31613 * 119.99677 * 359.72130 * 14 12 11 16 16 Si 1.86800 * 120.00029 * 179.72325 * 14 12 11 17 17 H 1.48501 * 109.46998 * 89.99781 * 16 14 12 18 18 H 1.48494 * 109.47286 * 209.99565 * 16 14 12 19 19 H 1.48496 * 109.47177 * 329.99954 * 16 14 12 20 20 C 1.55155 * 101.58037 * 37.00849 * 9 8 7 21 21 C 1.47021 * 125.64754 * 178.48551 * 7 5 4 22 22 H 1.09000 * 109.88545 * 300.50894 * 21 7 5 23 23 C 1.52996 * 109.88436 * 61.67934 * 21 7 5 24 24 C 1.36418 * 105.61843 * 0.26019 * 4 3 2 25 25 O 1.33652 * 108.39484 * 359.57711 * 24 4 3 26 26 H 1.08997 * 109.46838 * 90.00251 * 1 2 3 27 27 H 1.08998 * 109.47204 * 210.00050 * 1 2 3 28 28 H 1.08998 * 109.47135 * 330.00803 * 1 2 3 29 29 H 1.07998 * 127.02272 * 0.02562 * 3 2 1 30 30 H 1.08997 * 110.37120 * 37.00191 * 8 7 5 31 31 H 1.08996 * 110.46501 * 274.71956 * 8 7 5 32 32 H 0.96994 * 120.00170 * 93.54386 * 11 9 8 33 33 H 0.97008 * 119.99704 * 180.02562 * 15 14 12 34 34 H 1.09003 * 110.72234 * 82.86299 * 20 9 8 35 35 H 1.09007 * 110.72527 * 206.13598 * 20 9 8 36 36 H 1.09004 * 109.47323 * 58.54016 * 23 21 7 37 37 H 1.09000 * 109.47555 * 178.54446 * 23 21 7 38 38 H 1.09003 * 109.47162 * 298.54289 * 23 21 7 39 39 H 1.07998 * 125.80235 * 179.73255 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4125 0.0003 6 8 4.8383 2.6170 0.1557 7 7 6.0998 0.8182 -0.1721 8 6 6.3242 -0.6292 -0.3398 9 6 7.6720 -0.7365 -1.0958 10 1 8.1534 -1.6951 -0.9022 11 7 7.4858 -0.5265 -2.5337 12 6 7.1519 -1.5803 -3.3419 13 1 7.0263 -2.5663 -2.9194 14 6 6.9811 -1.3825 -4.7052 15 7 7.1346 -0.1811 -5.2202 16 14 6.5332 -2.8215 -5.8089 17 1 5.0553 -2.9397 -5.8928 18 1 7.0895 -2.5956 -7.1670 19 1 7.0986 -4.0731 -5.2442 20 6 8.4776 0.4290 -0.4634 21 6 7.3981 1.5059 -0.2250 22 1 7.4040 2.2244 -1.0447 23 6 7.6618 2.2224 1.1008 24 6 3.5790 -0.7582 -0.0050 25 8 2.2852 -1.0935 0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.9595 2.1231 0.0004 30 1 5.5219 -1.0717 -0.9302 31 1 6.3941 -1.1190 0.6314 32 1 7.5990 0.3589 -2.9132 33 1 7.0148 -0.0428 -6.1728 34 1 8.9282 0.1193 0.4796 35 1 9.2383 0.7919 -1.1547 36 1 7.6478 1.4975 1.9147 37 1 8.6369 2.7082 1.0637 38 1 6.8886 2.9721 1.2687 39 1 4.4103 -1.4476 -0.0103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988702352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:14 Heat of formation + Delta-G solvation = -20.684680 kcal Electronic energy + Delta-G solvation = -22124.461523 eV Core-core repulsion = 18840.520316 eV Total energy + Delta-G solvation = -3283.941208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.58467 -41.09724 -38.70464 -35.80176 -34.27568 -33.68249 -33.13327 -31.90661 -30.14850 -27.72556 -26.90923 -25.80045 -25.04950 -22.58394 -21.82816 -21.48700 -20.12753 -19.22929 -18.01006 -17.69953 -17.31587 -17.14601 -16.43478 -16.22346 -15.47723 -15.42761 -14.92890 -14.68083 -14.49172 -14.14992 -14.00544 -13.83039 -13.76962 -13.48626 -13.19411 -13.16208 -12.89625 -12.73968 -12.65332 -12.25882 -12.18444 -11.99743 -11.65109 -11.50434 -11.10874 -10.94907 -10.84209 -9.70394 -9.56122 -8.98648 -7.93485 -5.22490 0.33522 1.00646 1.48625 1.49261 1.57590 1.77957 2.04388 2.31949 2.56557 3.36353 3.44725 3.62925 3.75951 3.83341 3.91832 3.96115 4.11515 4.34671 4.36070 4.43756 4.50207 4.65426 4.71425 4.71928 4.73316 4.75362 4.84270 4.91098 5.04307 5.10920 5.17932 5.22248 5.34959 5.38845 5.50861 5.56116 5.98816 6.27289 6.52662 7.12540 7.34013 8.09030 8.30609 9.30218 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.006786 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.446202 B = 4124.882400 C = 5745.875431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.010 4.010 3 C -0.196 4.196 4 C -0.259 4.259 5 C 0.591 3.409 6 O -0.590 6.590 7 N -0.594 5.594 8 C 0.056 3.944 9 C 0.158 3.842 10 H 0.095 0.905 11 N -0.727 5.727 12 C -0.233 4.233 13 H 0.090 0.910 14 C -0.078 4.078 15 N -0.973 5.973 16 Si 0.968 3.032 17 H -0.294 1.294 18 H -0.303 1.303 19 H -0.260 1.260 20 C -0.120 4.120 21 C 0.133 3.867 22 H 0.039 0.961 23 C -0.148 4.148 24 C 0.022 3.978 25 O -0.177 6.177 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.156 0.844 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.369 0.631 33 H 0.247 0.753 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 -3.280 15.269 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.058 4.058 3 C -0.215 4.215 4 C -0.263 4.263 5 C 0.382 3.618 6 O -0.473 6.473 7 N -0.325 5.325 8 C -0.068 4.068 9 C 0.048 3.952 10 H 0.112 0.888 11 N -0.365 5.365 12 C -0.365 4.365 13 H 0.108 0.892 14 C -0.270 4.270 15 N -0.624 5.624 16 Si 0.797 3.203 17 H -0.221 1.221 18 H -0.230 1.230 19 H -0.185 1.185 20 C -0.159 4.159 21 C 0.030 3.970 22 H 0.057 0.943 23 C -0.206 4.206 24 C -0.047 4.047 25 O -0.073 6.073 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.174 0.826 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.200 0.800 33 H 0.056 0.944 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.596 -3.103 15.304 16.951 hybrid contribution -0.044 0.428 -1.445 1.507 sum -6.640 -2.675 13.859 15.598 Atomic orbital electron populations 1.20541 0.81409 1.05807 1.04894 1.23049 0.95823 0.82772 1.04162 1.22612 0.89959 1.00428 1.08516 1.21545 0.94502 0.94460 1.15807 1.17247 0.82264 0.86218 0.76058 1.90677 1.87216 1.15817 1.53583 1.48314 1.05234 1.09447 1.69531 1.23799 1.01754 0.80099 1.01191 1.21683 0.92240 0.98399 0.82908 0.88756 1.42578 1.82861 1.08467 1.02622 1.19694 1.37040 0.90521 0.89256 0.89226 1.25555 1.03946 0.98664 0.98795 1.69841 1.58394 1.22423 1.11703 0.85220 0.77288 0.79680 0.78081 1.22113 1.22995 1.18479 1.22992 0.96088 0.94137 1.02648 1.21592 0.82509 0.94957 0.97921 0.94316 1.22032 1.02196 1.00522 0.95806 1.25750 0.84617 0.95628 0.98739 1.83773 1.16668 1.35869 1.71008 0.88919 0.88672 0.87459 0.82621 0.90770 0.87630 0.79996 0.94386 0.86442 0.90374 0.90934 0.89688 0.94155 0.74026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.40 71.24 0.74 -0.32 16 2 C -0.01 -0.25 7.28 24.76 0.18 -0.07 16 3 C -0.20 -6.17 10.91 23.65 0.26 -5.91 16 4 C -0.26 -9.12 6.25 -18.99 -0.12 -9.24 16 5 C 0.59 23.57 7.65 86.65 0.66 24.23 16 6 O -0.59 -27.14 15.98 -4.09 -0.07 -27.20 16 7 N -0.59 -20.77 3.06 -791.94 -2.43 -23.20 16 8 C 0.06 1.67 5.00 86.86 0.43 2.11 16 9 C 0.16 5.20 3.69 46.38 0.17 5.37 16 10 H 0.09 2.77 8.13 -2.39 -0.02 2.75 16 11 N -0.73 -33.72 5.27 -316.37 -1.67 -35.39 16 12 C -0.23 -11.93 9.98 84.03 0.84 -11.09 16 13 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 14 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 15 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 16 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 17 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 18 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 19 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 20 C -0.12 -3.32 6.05 31.78 0.19 -3.13 16 21 C 0.13 4.34 3.46 45.34 0.16 4.50 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 23 C -0.15 -4.01 9.10 71.98 0.66 -3.36 16 24 C 0.02 0.65 10.47 67.39 0.71 1.35 16 25 O -0.18 -4.95 10.52 4.48 0.05 -4.90 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.16 4.69 8.06 -2.91 -0.02 4.67 16 30 H 0.07 2.43 5.31 -2.39 -0.01 2.42 16 31 H 0.11 2.24 8.05 -2.39 -0.02 2.22 16 32 H 0.37 19.54 7.81 -92.71 -0.72 18.81 16 33 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 34 H 0.12 2.32 7.85 -2.39 -0.02 2.30 16 35 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.32 6.83 -2.39 -0.02 1.30 16 39 H 0.24 5.79 4.77 -2.91 -0.01 5.78 16 Total: -1.00 -73.93 324.46 3.89 -70.05 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.34 Total: 32.37 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.34 Total: 0.60 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -3.81 Total: -117.77 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.02 Total: -32.11 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -73.93 3.89 -70.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988702352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.362 kcal (2) G-P(sol) polarization free energy of solvation -73.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds