Wall clock time and date at job start Tue Mar 31 2020 00:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34176 * 125.43712 * 2 1 4 4 C 1.47020 * 105.95464 * 180.14426 * 3 2 1 5 5 C 1.47383 * 127.19464 * 179.83244 * 4 3 2 6 6 O 1.21606 * 119.99856 * 359.71080 * 5 4 3 7 7 N 1.34780 * 119.99833 * 179.71215 * 5 4 3 8 8 C 1.47020 * 125.64983 * 0.02562 * 7 5 4 9 9 C 1.54324 * 107.39983 * 181.10309 * 8 7 5 10 10 H 1.08999 * 110.72009 * 263.75165 * 9 8 7 11 11 N 1.46501 * 110.72080 * 140.47854 * 9 8 7 12 12 C 1.36940 * 119.99814 * 86.44783 * 11 9 8 13 13 H 1.08003 * 120.00184 * 0.02562 * 12 11 9 14 14 C 1.38813 * 119.99855 * 179.97438 * 12 11 9 15 15 N 1.31623 * 119.99994 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46957 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47452 * 120.00319 * 16 14 12 19 19 H 1.48507 * 109.46984 * 240.00250 * 16 14 12 20 20 C 1.55159 * 102.94134 * 22.11770 * 9 8 7 21 21 C 1.47743 * 125.81887 * 179.97438 * 7 5 4 22 22 H 1.09001 * 110.43832 * 274.70711 * 21 7 5 23 23 C 1.53002 * 110.38498 * 36.97963 * 21 7 5 24 24 C 1.36424 * 105.61554 * 359.57501 * 4 3 2 25 25 O 1.33652 * 108.39315 * 0.25982 * 24 4 3 26 26 H 1.09005 * 109.47177 * 180.36172 * 1 2 3 27 27 H 1.08997 * 109.47249 * 300.35777 * 1 2 3 28 28 H 1.08995 * 109.47341 * 60.35985 * 1 2 3 29 29 H 1.08002 * 127.02238 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.88367 * 61.60808 * 8 7 5 31 31 H 1.09000 * 109.88319 * 300.59426 * 8 7 5 32 32 H 0.97002 * 119.99899 * 266.45892 * 11 9 8 33 33 H 0.96997 * 119.99623 * 179.97438 * 15 14 12 34 34 H 1.08994 * 111.00854 * 82.57414 * 20 9 8 35 35 H 1.09006 * 111.00035 * 206.42431 * 20 9 8 36 36 H 1.09005 * 109.47424 * 175.42921 * 23 21 7 37 37 H 1.09000 * 109.46980 * 295.42764 * 23 21 7 38 38 H 1.09000 * 109.47236 * 55.42377 * 23 21 7 39 39 H 1.08000 * 125.80242 * 180.26062 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6029 -0.0036 5 6 4.9024 1.4125 -0.0083 6 8 4.8319 2.6265 -0.0150 7 7 6.1068 0.8074 -0.0053 8 6 6.3360 -0.6448 0.0021 9 6 7.8623 -0.8709 0.0315 10 1 8.2467 -1.0393 -0.9745 11 7 8.2036 -1.9906 0.9124 12 6 8.1988 -3.2706 0.4259 13 1 7.9439 -3.4547 -0.6073 14 6 8.5227 -4.3315 1.2605 15 7 8.8339 -4.1071 2.5195 16 14 8.5169 -6.0776 0.5967 17 1 8.1350 -6.0603 -0.8383 18 1 9.8721 -6.6669 0.7417 19 1 7.5380 -6.8937 1.3591 20 6 8.4005 0.4652 0.6083 21 6 7.4172 1.4897 -0.0100 22 1 7.7157 1.7338 -1.0295 23 6 7.3613 2.7571 0.8453 24 6 3.5790 -0.7582 0.0044 25 8 2.2852 -1.0935 0.0063 26 1 -0.3634 -1.0277 0.0065 27 1 -0.3633 0.5194 0.8867 28 1 -0.3634 0.5082 -0.8931 29 1 1.9594 2.1230 -0.0004 30 1 5.9124 -1.0916 -0.8974 31 1 5.8786 -1.0878 0.8867 32 1 8.4328 -1.8252 1.8403 33 1 9.0598 -4.8485 3.1028 34 1 8.3397 0.4736 1.6965 35 1 9.4211 0.6521 0.2742 36 1 8.3540 3.2041 0.8979 37 1 6.6663 3.4673 0.3973 38 1 7.0236 2.5028 1.8500 39 1 4.4103 -1.4476 0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988702355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:19 Heat of formation + Delta-G solvation = -1.025146 kcal Electronic energy + Delta-G solvation = -21790.635604 eV Core-core repulsion = 18507.546898 eV Total energy + Delta-G solvation = -3283.088706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.50840 -39.79278 -37.25008 -34.22366 -33.16078 -32.67866 -31.46406 -30.81969 -28.47050 -26.74804 -25.62170 -24.27002 -23.34578 -21.18658 -20.83577 -20.30754 -18.85181 -17.31116 -16.76110 -16.42213 -16.20252 -15.99416 -15.09840 -14.57829 -14.08166 -13.73994 -13.65553 -13.39016 -13.26568 -13.16954 -13.08360 -12.76596 -12.68150 -12.16001 -11.94154 -11.93241 -11.64246 -11.27039 -11.05462 -10.80770 -10.72038 -10.36631 -10.07937 -9.82321 -9.69731 -9.52185 -9.07378 -8.55099 -8.35824 -7.17472 -5.91796 -3.23585 1.48214 2.05377 2.85802 3.19921 3.34952 3.41291 3.43327 3.55922 4.44945 4.55760 4.68464 4.92298 5.01712 5.05604 5.20873 5.22312 5.27180 5.42361 5.46600 5.51835 5.53041 5.60549 5.75705 5.81120 5.83422 6.01179 6.04785 6.06467 6.13197 6.35368 6.37305 6.42430 6.46042 6.67340 6.80111 7.06095 7.57055 7.79490 8.25257 8.43395 9.37704 9.90778 10.25653 11.29986 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.005429 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.339611 B = 5156.096753 C = 6816.800448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.024 4.024 3 C -0.164 4.164 4 C -0.232 4.232 5 C 0.601 3.399 6 O -0.548 6.548 7 N -0.606 5.606 8 C 0.060 3.940 9 C 0.173 3.827 10 H 0.068 0.932 11 N -0.713 5.713 12 C -0.253 4.253 13 H 0.074 0.926 14 C -0.006 4.006 15 N -0.927 5.927 16 Si 0.907 3.093 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.290 1.290 20 C -0.136 4.136 21 C 0.139 3.861 22 H 0.074 0.926 23 C -0.160 4.160 24 C 0.017 3.983 25 O -0.174 6.174 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.156 0.844 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.388 0.612 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.787 9.270 -5.135 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.237 4.237 5 C 0.391 3.609 6 O -0.428 6.428 7 N -0.340 5.340 8 C -0.066 4.066 9 C 0.061 3.939 10 H 0.086 0.914 11 N -0.353 5.353 12 C -0.384 4.384 13 H 0.092 0.908 14 C -0.203 4.203 15 N -0.574 5.574 16 Si 0.738 3.262 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.217 1.217 20 C -0.175 4.175 21 C 0.036 3.964 22 H 0.092 0.908 23 C -0.218 4.218 24 C -0.053 4.053 25 O -0.070 6.070 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.174 0.826 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.222 0.778 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.998 9.470 -5.218 15.422 hybrid contribution 0.219 -0.962 0.060 0.988 sum -10.779 8.508 -5.159 14.669 Atomic orbital electron populations 1.20292 0.84936 1.04034 1.03540 1.22296 0.94142 0.83925 1.06934 1.22398 0.90034 0.99467 1.06475 1.21458 0.94469 0.93298 1.14449 1.16883 0.81237 0.86510 0.76252 1.90685 1.86652 1.13460 1.51992 1.48515 1.04911 1.08323 1.72217 1.23620 1.02813 0.79093 1.01039 1.21168 0.89520 0.87671 0.95555 0.91419 1.42408 1.81083 1.01424 1.10405 1.19295 1.40351 0.83294 0.95446 0.90811 1.24780 1.01632 0.98160 0.95728 1.69671 1.52227 1.30862 1.04674 0.86130 0.77330 0.84742 0.78015 1.20399 1.21714 1.21724 1.23146 0.98310 0.94667 1.01391 1.21914 0.82008 0.93129 0.99335 0.90798 1.22120 1.02085 0.97533 1.00036 1.25616 0.84028 0.96390 0.99253 1.83781 1.16784 1.35403 1.70994 0.90484 0.89709 0.89744 0.82635 0.91974 0.90454 0.77768 0.93300 0.90396 0.89965 0.92242 0.90118 0.92730 0.75771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.40 36.00 0.37 -0.19 16 2 C -0.02 -0.30 7.28 -35.74 -0.26 -0.56 16 3 C -0.16 -2.30 10.90 -37.45 -0.41 -2.71 16 4 C -0.23 -3.71 6.28 -103.27 -0.65 -4.36 16 5 C 0.60 10.52 7.63 -12.54 -0.10 10.42 16 6 O -0.55 -10.65 14.73 5.27 0.08 -10.58 16 7 N -0.61 -9.87 3.25 -164.10 -0.53 -10.40 16 8 C 0.06 0.99 4.76 -3.06 -0.01 0.98 16 9 C 0.17 3.10 3.59 -66.09 -0.24 2.86 16 10 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 11 N -0.71 -16.25 5.18 -51.65 -0.27 -16.52 16 12 C -0.25 -6.44 9.98 -15.06 -0.15 -6.59 16 13 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 14 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 15 N -0.93 -26.53 13.06 55.49 0.72 -25.80 16 16 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 C -0.14 -2.10 6.11 -24.60 -0.15 -2.25 16 21 C 0.14 2.07 3.77 -66.26 -0.25 1.82 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 C -0.16 -2.30 8.60 37.16 0.32 -1.98 16 24 C 0.02 0.25 10.63 30.08 0.32 0.57 16 25 O -0.17 -2.47 10.52 7.65 0.08 -2.39 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.06 0.95 7.05 -51.93 -0.37 0.58 16 31 H 0.08 1.36 6.76 -51.93 -0.35 1.01 16 32 H 0.39 9.54 7.71 -40.82 -0.31 9.22 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.08 1.27 7.92 -51.93 -0.41 0.85 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 1.29 6.12 -51.93 -0.32 0.97 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.23 3.13 4.45 -52.49 -0.23 2.90 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -30.54 322.37 -6.72 -37.26 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.34 Total: 9.68 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.30 Total: -2.25 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.08 Total: -52.72 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.16 Total: -12.97 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.54 -6.72 -37.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988702355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.238 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds