Wall clock time and date at job start Tue Mar 31 2020 00:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34176 * 125.43712 * 2 1 4 4 C 1.47020 * 105.95464 * 180.14426 * 3 2 1 5 5 C 1.47383 * 127.19464 * 179.83244 * 4 3 2 6 6 O 1.21606 * 119.99856 * 359.71080 * 5 4 3 7 7 N 1.34780 * 119.99833 * 179.71215 * 5 4 3 8 8 C 1.47020 * 125.64983 * 0.02562 * 7 5 4 9 9 C 1.54324 * 107.39983 * 181.10309 * 8 7 5 10 10 H 1.08999 * 110.72009 * 263.75165 * 9 8 7 11 11 N 1.46501 * 110.72080 * 140.47854 * 9 8 7 12 12 C 1.36940 * 119.99814 * 86.44783 * 11 9 8 13 13 H 1.08003 * 120.00184 * 0.02562 * 12 11 9 14 14 C 1.38813 * 119.99855 * 179.97438 * 12 11 9 15 15 N 1.31623 * 119.99994 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46957 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47452 * 120.00319 * 16 14 12 19 19 H 1.48507 * 109.46984 * 240.00250 * 16 14 12 20 20 C 1.55159 * 102.94134 * 22.11770 * 9 8 7 21 21 C 1.47743 * 125.81887 * 179.97438 * 7 5 4 22 22 H 1.09001 * 110.43832 * 274.70711 * 21 7 5 23 23 C 1.53002 * 110.38498 * 36.97963 * 21 7 5 24 24 C 1.36424 * 105.61554 * 359.57501 * 4 3 2 25 25 O 1.33652 * 108.39315 * 0.25982 * 24 4 3 26 26 H 1.09005 * 109.47177 * 180.36172 * 1 2 3 27 27 H 1.08997 * 109.47249 * 300.35777 * 1 2 3 28 28 H 1.08995 * 109.47341 * 60.35985 * 1 2 3 29 29 H 1.08002 * 127.02238 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.88367 * 61.60808 * 8 7 5 31 31 H 1.09000 * 109.88319 * 300.59426 * 8 7 5 32 32 H 0.97002 * 119.99899 * 266.45892 * 11 9 8 33 33 H 0.96997 * 119.99623 * 179.97438 * 15 14 12 34 34 H 1.08994 * 111.00854 * 82.57414 * 20 9 8 35 35 H 1.09006 * 111.00035 * 206.42431 * 20 9 8 36 36 H 1.09005 * 109.47424 * 175.42921 * 23 21 7 37 37 H 1.09000 * 109.46980 * 295.42764 * 23 21 7 38 38 H 1.09000 * 109.47236 * 55.42377 * 23 21 7 39 39 H 1.08000 * 125.80242 * 180.26062 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6029 -0.0036 5 6 4.9024 1.4125 -0.0083 6 8 4.8319 2.6265 -0.0150 7 7 6.1068 0.8074 -0.0053 8 6 6.3360 -0.6448 0.0021 9 6 7.8623 -0.8709 0.0315 10 1 8.2467 -1.0393 -0.9745 11 7 8.2036 -1.9906 0.9124 12 6 8.1988 -3.2706 0.4259 13 1 7.9439 -3.4547 -0.6073 14 6 8.5227 -4.3315 1.2605 15 7 8.8339 -4.1071 2.5195 16 14 8.5169 -6.0776 0.5967 17 1 8.1350 -6.0603 -0.8383 18 1 9.8721 -6.6669 0.7417 19 1 7.5380 -6.8937 1.3591 20 6 8.4005 0.4652 0.6083 21 6 7.4172 1.4897 -0.0100 22 1 7.7157 1.7338 -1.0295 23 6 7.3613 2.7571 0.8453 24 6 3.5790 -0.7582 0.0044 25 8 2.2852 -1.0935 0.0063 26 1 -0.3634 -1.0277 0.0065 27 1 -0.3633 0.5194 0.8867 28 1 -0.3634 0.5082 -0.8931 29 1 1.9594 2.1230 -0.0004 30 1 5.9124 -1.0916 -0.8974 31 1 5.8786 -1.0878 0.8867 32 1 8.4328 -1.8252 1.8403 33 1 9.0598 -4.8485 3.1028 34 1 8.3397 0.4736 1.6965 35 1 9.4211 0.6521 0.2742 36 1 8.3540 3.2041 0.8979 37 1 6.6663 3.4673 0.3973 38 1 7.0236 2.5028 1.8500 39 1 4.4103 -1.4476 0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988702355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:18 Heat of formation + Delta-G solvation = -20.081820 kcal Electronic energy + Delta-G solvation = -21791.461963 eV Core-core repulsion = 18507.546898 eV Total energy + Delta-G solvation = -3283.915066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.60693 -41.12908 -38.67463 -35.96223 -34.31992 -33.69136 -33.21654 -31.93965 -30.10184 -27.67776 -26.89671 -25.96025 -24.78677 -22.43117 -22.02274 -21.67179 -20.09252 -19.16276 -17.96320 -17.68493 -17.36999 -17.22005 -16.64023 -16.13503 -15.49854 -15.32141 -15.12252 -14.64009 -14.47431 -14.17489 -14.02039 -13.84606 -13.77883 -13.45576 -13.31539 -13.09779 -12.92512 -12.84915 -12.68694 -12.29482 -12.15752 -12.04927 -11.72719 -11.55749 -11.03903 -10.86393 -10.79532 -9.70312 -9.58278 -9.07463 -7.93994 -5.24378 0.28877 1.00081 1.51037 1.52684 1.61327 1.74730 2.00690 2.25955 2.57660 3.35641 3.37340 3.62469 3.73950 3.79520 3.85847 3.94877 4.16500 4.26512 4.34879 4.44685 4.50409 4.51772 4.69615 4.70402 4.73823 4.74161 4.82333 4.84682 5.05047 5.08915 5.12628 5.24461 5.31330 5.40509 5.51820 5.56792 5.98938 6.26603 6.45164 7.09051 7.34901 8.05489 8.29377 9.29089 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.005429 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.339611 B = 5156.096753 C = 6816.800448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.011 4.011 3 C -0.187 4.187 4 C -0.256 4.256 5 C 0.596 3.404 6 O -0.573 6.573 7 N -0.605 5.605 8 C 0.072 3.928 9 C 0.167 3.833 10 H 0.076 0.924 11 N -0.724 5.724 12 C -0.242 4.242 13 H 0.085 0.915 14 C -0.068 4.068 15 N -0.967 5.967 16 Si 0.967 3.033 17 H -0.263 1.263 18 H -0.298 1.298 19 H -0.297 1.297 20 C -0.125 4.125 21 C 0.137 3.863 22 H 0.091 0.909 23 C -0.152 4.152 24 C 0.016 3.984 25 O -0.180 6.180 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.164 0.836 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 9.439 -6.510 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.207 4.207 4 C -0.260 4.260 5 C 0.387 3.613 6 O -0.455 6.455 7 N -0.338 5.338 8 C -0.053 4.053 9 C 0.057 3.943 10 H 0.094 0.906 11 N -0.363 5.363 12 C -0.373 4.373 13 H 0.102 0.898 14 C -0.261 4.261 15 N -0.617 5.617 16 Si 0.797 3.203 17 H -0.187 1.187 18 H -0.225 1.225 19 H -0.225 1.225 20 C -0.163 4.163 21 C 0.035 3.965 22 H 0.109 0.891 23 C -0.209 4.209 24 C -0.053 4.053 25 O -0.076 6.076 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.182 0.818 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.209 0.791 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -12.005 9.662 -6.643 16.782 hybrid contribution 0.469 -0.924 0.449 1.129 sum -11.536 8.739 -6.194 15.742 Atomic orbital electron populations 1.20552 0.81451 1.05360 1.05388 1.23121 0.95857 0.82817 1.04187 1.22593 0.89443 1.00502 1.08142 1.21575 0.94837 0.93868 1.15708 1.17139 0.81858 0.86402 0.75852 1.90666 1.87052 1.14429 1.53342 1.48550 1.05295 1.08223 1.71757 1.23341 1.01492 0.79355 1.01157 1.21360 0.90388 0.87369 0.95203 0.90568 1.42539 1.81350 1.01965 1.10447 1.19694 1.37670 0.84321 0.95638 0.89760 1.25495 1.02861 1.01639 0.96075 1.69815 1.54671 1.31313 1.05936 0.85173 0.76478 0.80584 0.78108 1.18665 1.22501 1.22467 1.23061 0.99437 0.93162 1.00652 1.22070 0.81132 0.93024 1.00313 0.89121 1.22030 1.03158 0.96949 0.98799 1.25587 0.84561 0.95967 0.99222 1.83801 1.16657 1.36241 1.70909 0.89402 0.87919 0.87667 0.81837 0.90532 0.91816 0.79147 0.94072 0.91477 0.88002 0.89601 0.91631 0.94156 0.75527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.40 71.23 0.74 -0.17 16 2 C -0.01 -0.26 7.28 24.76 0.18 -0.08 16 3 C -0.19 -5.09 10.90 23.65 0.26 -4.84 16 4 C -0.26 -8.07 6.28 -18.99 -0.12 -8.19 16 5 C 0.60 20.75 7.63 86.65 0.66 21.41 16 6 O -0.57 -22.29 14.73 -4.05 -0.06 -22.35 16 7 N -0.61 -19.24 3.25 -791.34 -2.57 -21.81 16 8 C 0.07 2.31 4.76 86.73 0.41 2.72 16 9 C 0.17 5.76 3.59 46.18 0.17 5.93 16 10 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 11 N -0.72 -32.67 5.18 -317.32 -1.64 -34.32 16 12 C -0.24 -12.11 9.98 84.03 0.84 -11.27 16 13 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 14 C -0.07 -3.64 5.50 84.86 0.47 -3.17 16 15 N -0.97 -56.18 13.06 21.65 0.28 -55.89 16 16 Si 0.97 43.43 29.55 68.60 2.03 45.45 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 20 C -0.12 -3.64 6.11 31.97 0.20 -3.44 16 21 C 0.14 3.86 3.77 45.39 0.17 4.03 16 22 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 23 C -0.15 -4.19 8.60 71.98 0.62 -3.57 16 24 C 0.02 0.47 10.63 67.40 0.72 1.19 16 25 O -0.18 -4.90 10.52 4.46 0.05 -4.86 16 26 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.08 2.23 7.05 -2.39 -0.02 2.22 16 31 H 0.06 2.24 6.76 -2.39 -0.02 2.23 16 32 H 0.38 18.67 7.71 -92.71 -0.72 17.96 16 33 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.07 2.13 7.92 -2.39 -0.02 2.11 16 35 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.06 2.05 6.12 -2.39 -0.01 2.03 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.23 6.24 4.45 -2.91 -0.01 6.23 16 Total: -1.00 -65.41 322.37 3.74 -61.67 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.35 Total: 31.57 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.31 Total: 0.54 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.93 Total: -112.03 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.01 Total: -27.21 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.41 3.74 -61.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988702355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.583 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds