Wall clock time and date at job start Tue Mar 31 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35131 * 126.44663 * 2 1 4 4 O 1.33929 * 108.76703 * 179.75248 * 3 2 1 5 5 C 1.34916 * 109.38310 * 0.40400 * 4 3 2 6 6 C 1.46657 * 125.98374 * 179.86547 * 5 4 3 7 7 O 1.21693 * 120.00024 * 179.68874 * 6 5 4 8 8 N 1.34781 * 120.00351 * 359.68461 * 6 5 4 9 9 C 1.47425 * 125.64363 * 0.05541 * 8 6 5 10 10 C 1.54914 * 104.83075 * 204.08090 * 9 8 6 11 11 H 1.08993 * 111.03450 * 81.08248 * 10 9 8 12 12 N 1.46504 * 111.00258 * 204.92014 * 10 9 8 13 13 C 1.36943 * 119.99781 * 267.19686 * 12 10 9 14 14 H 1.08002 * 119.99788 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99622 * 180.27904 * 13 12 10 16 16 N 1.31614 * 120.00467 * 359.72375 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.72266 * 15 13 12 18 18 H 1.48496 * 109.47031 * 59.99836 * 17 15 13 19 19 H 1.48497 * 109.47267 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47169 * 300.00118 * 17 15 13 21 21 C 1.55149 * 101.58116 * 322.99151 * 10 9 8 22 22 C 1.47014 * 125.65005 * 180.02562 * 8 6 5 23 23 H 1.09000 * 109.88255 * 59.57088 * 22 8 6 24 24 C 1.52999 * 109.88369 * 298.40047 * 22 8 6 25 25 C 1.36534 * 108.02760 * 359.59618 * 5 4 3 26 26 H 1.09001 * 109.46948 * 270.00479 * 1 2 3 27 27 H 1.09005 * 109.46741 * 30.00290 * 1 2 3 28 28 H 1.08995 * 109.46753 * 150.00188 * 1 2 3 29 29 H 1.08005 * 125.61132 * 0.03160 * 3 2 1 30 30 H 1.09004 * 110.36839 * 85.24810 * 9 8 6 31 31 H 1.08995 * 110.37517 * 322.92309 * 9 8 6 32 32 H 0.97000 * 120.00410 * 87.20011 * 12 10 9 33 33 H 0.96995 * 120.00147 * 180.02562 * 16 15 13 34 34 H 1.09007 * 110.72112 * 153.86341 * 21 10 9 35 35 H 1.08999 * 110.72697 * 277.13701 * 21 10 9 36 36 H 1.08999 * 109.47575 * 302.19548 * 24 22 8 37 37 H 1.09008 * 109.46550 * 62.19505 * 24 22 8 38 38 H 1.09003 * 109.47111 * 182.18882 * 24 22 8 39 39 H 1.07996 * 126.65143 * 180.26332 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5859 0.6803 0.0055 5 6 3.6260 -0.6683 0.0001 6 6 4.8378 -1.4943 0.0007 7 8 4.7470 -2.7078 0.0012 8 7 6.0521 -0.9094 0.0006 9 6 6.3063 0.5427 0.0012 10 6 7.7212 0.6979 -0.6102 11 1 7.6844 0.6516 -1.6985 12 7 8.3538 1.9408 -0.1613 13 6 8.2328 3.0802 -0.9111 14 1 7.6714 3.0625 -1.8336 15 6 8.8370 4.2564 -0.4887 16 7 9.5216 4.2778 0.6352 17 14 8.6785 5.8088 -1.5155 18 1 7.2443 6.1699 -1.6486 19 1 9.4082 6.9184 -0.8510 20 1 9.2565 5.5723 -2.8628 21 6 8.4507 -0.5402 -0.0252 22 6 7.3425 -1.6139 0.0006 23 1 7.4191 -2.2473 -0.8832 24 6 7.4713 -2.4638 1.2663 25 6 2.3408 -1.1293 0.0001 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.9771 2.1145 0.0005 30 1 6.2885 0.9306 1.0197 31 1 5.5686 1.0573 -0.6145 32 1 8.8583 1.9566 0.6671 33 1 9.9434 5.0998 0.9305 34 1 9.2702 -0.8476 -0.6750 35 1 8.8124 -0.3345 0.9822 36 1 7.3741 -1.8253 2.1443 37 1 6.6858 -3.2196 1.2779 38 1 8.4457 -2.9523 1.2783 39 1 2.0266 -2.1625 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989299800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:23 Heat of formation + Delta-G solvation = -8.198169 kcal Electronic energy + Delta-G solvation = -21788.757556 eV Core-core repulsion = 18505.357804 eV Total energy + Delta-G solvation = -3283.399752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.66972 -39.77142 -37.42233 -34.38165 -34.12986 -31.89901 -31.41060 -30.22891 -28.44910 -27.32351 -25.47867 -24.24196 -23.38016 -21.14324 -20.81856 -20.30420 -18.87352 -17.38006 -17.17328 -16.57474 -16.29106 -15.81668 -15.11182 -14.43499 -13.99953 -13.76783 -13.65385 -13.38621 -13.28502 -13.21265 -12.90786 -12.78671 -12.49764 -12.34381 -12.16546 -11.84700 -11.67005 -11.17018 -11.03332 -10.76268 -10.67066 -10.33353 -10.09454 -10.00509 -9.77884 -9.72689 -9.04444 -8.68700 -8.33181 -7.11954 -5.87174 -3.18149 1.14042 2.28583 2.73683 3.25826 3.30782 3.38457 3.43577 3.44142 4.45812 4.57870 4.71488 4.88831 4.98053 5.10155 5.21983 5.26133 5.44809 5.47302 5.55289 5.56148 5.67590 5.70942 5.76042 5.81780 5.86768 5.89874 6.08866 6.14329 6.23494 6.32492 6.36771 6.43699 6.48740 6.62017 6.82026 6.94944 7.60731 7.67774 8.19627 8.30400 9.42199 9.95252 10.30542 11.34741 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.005324 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.704116 B = 5258.232632 C = 6874.947898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.200 4.200 3 C -0.011 4.011 4 O -0.148 6.148 5 C -0.064 4.064 6 C 0.611 3.389 7 O -0.535 6.535 8 N -0.598 5.598 9 C 0.072 3.928 10 C 0.173 3.827 11 H 0.068 0.932 12 N -0.710 5.710 13 C -0.250 4.250 14 H 0.072 0.928 15 C -0.007 4.007 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C -0.138 4.138 22 C 0.138 3.862 23 H 0.076 0.924 24 C -0.161 4.161 25 C -0.127 4.127 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.207 0.793 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.387 0.613 33 H 0.258 0.742 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.608 -9.466 -0.245 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.201 4.201 3 C -0.081 4.081 4 O -0.043 6.043 5 C -0.117 4.117 6 C 0.399 3.601 7 O -0.415 6.415 8 N -0.330 5.330 9 C -0.053 4.053 10 C 0.060 3.940 11 H 0.086 0.914 12 N -0.350 5.350 13 C -0.381 4.381 14 H 0.090 0.910 15 C -0.203 4.203 16 N -0.577 5.577 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.211 1.211 21 C -0.177 4.177 22 C 0.035 3.965 23 H 0.094 0.906 24 C -0.219 4.219 25 C -0.147 4.147 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.223 0.777 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.222 0.778 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.411 -9.775 -0.359 15.802 hybrid contribution -0.178 1.030 -0.164 1.058 sum -12.589 -8.745 -0.523 15.337 Atomic orbital electron populations 1.20150 0.88837 1.02650 1.02124 1.20440 0.97526 0.92432 1.09739 1.24282 0.80419 1.00073 1.03335 1.84308 1.28671 1.21555 1.69737 1.22055 0.95916 0.80765 1.12933 1.16244 0.80466 0.85895 0.77457 1.90822 1.85793 1.12169 1.52719 1.48538 1.04613 1.09499 1.70374 1.23664 1.01636 0.77719 1.02291 1.21297 0.89082 0.86515 0.97103 0.91357 1.42304 1.60817 1.04665 1.27168 1.19217 1.27944 0.87612 1.03284 0.90997 1.24757 1.00032 0.98056 0.97505 1.69644 1.38257 1.27425 1.22373 0.86259 0.77549 0.82883 0.79418 1.21152 1.21615 1.21119 1.23069 0.96692 0.95129 1.02769 1.21587 0.82202 0.94065 0.98605 0.90633 1.22141 1.02284 1.00274 0.97240 1.21747 0.90505 1.00311 1.02172 0.91455 0.91547 0.91481 0.77658 0.91148 0.90366 0.77814 0.93258 0.90114 0.90265 0.92442 0.91561 0.91637 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.39 36.01 0.37 -0.28 16 2 C -0.20 -2.31 6.14 -104.92 -0.64 -2.96 16 3 C -0.01 -0.13 12.00 29.63 0.36 0.23 16 4 O -0.15 -2.27 7.86 4.99 0.04 -2.23 16 5 C -0.06 -1.02 6.93 -36.80 -0.25 -1.27 16 6 C 0.61 10.58 7.61 -12.86 -0.10 10.48 16 7 O -0.53 -10.06 15.91 5.20 0.08 -9.98 16 8 N -0.60 -10.02 3.07 -164.55 -0.50 -10.52 16 9 C 0.07 1.30 5.86 -2.53 -0.01 1.28 16 10 C 0.17 3.28 3.71 -65.78 -0.24 3.03 16 11 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 12 N -0.71 -16.80 5.24 -51.35 -0.27 -17.07 16 13 C -0.25 -6.59 9.96 -15.06 -0.15 -6.74 16 14 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 15 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 16 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 17 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.14 -2.16 6.12 -24.90 -0.15 -2.31 16 22 C 0.14 2.09 3.46 -66.95 -0.23 1.86 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 24 C -0.16 -2.23 9.09 37.16 0.34 -1.89 16 25 C -0.13 -1.73 10.57 -39.39 -0.42 -2.15 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.21 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.08 1.44 6.23 -51.93 -0.32 1.12 16 32 H 0.39 9.73 7.76 -40.82 -0.32 9.41 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 35 H 0.08 1.26 7.71 -51.93 -0.40 0.86 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.99 6.90 -51.92 -0.36 0.63 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -30.50 327.44 -6.84 -37.35 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.59 Total: 8.24 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -1.24 Total: -1.01 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.05 Total: -53.85 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.12 Total: -12.21 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.50 -6.84 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989299800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.150 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds