Wall clock time and date at job start Tue Mar 31 2020 01:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35131 * 126.44663 * 2 1 4 4 O 1.33929 * 108.76703 * 179.75248 * 3 2 1 5 5 C 1.34916 * 109.38310 * 0.40400 * 4 3 2 6 6 C 1.46657 * 125.98374 * 179.86547 * 5 4 3 7 7 O 1.21693 * 120.00024 * 179.68874 * 6 5 4 8 8 N 1.34781 * 120.00351 * 359.68461 * 6 5 4 9 9 C 1.47425 * 125.64363 * 0.05541 * 8 6 5 10 10 C 1.54914 * 104.83075 * 204.08090 * 9 8 6 11 11 H 1.08993 * 111.03450 * 81.08248 * 10 9 8 12 12 N 1.46504 * 111.00258 * 204.92014 * 10 9 8 13 13 C 1.36943 * 119.99781 * 267.19686 * 12 10 9 14 14 H 1.08002 * 119.99788 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99622 * 180.27904 * 13 12 10 16 16 N 1.31614 * 120.00467 * 359.72375 * 15 13 12 17 17 Si 1.86801 * 119.99700 * 179.72266 * 15 13 12 18 18 H 1.48496 * 109.47031 * 59.99836 * 17 15 13 19 19 H 1.48497 * 109.47267 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47169 * 300.00118 * 17 15 13 21 21 C 1.55149 * 101.58116 * 322.99151 * 10 9 8 22 22 C 1.47014 * 125.65005 * 180.02562 * 8 6 5 23 23 H 1.09000 * 109.88255 * 59.57088 * 22 8 6 24 24 C 1.52999 * 109.88369 * 298.40047 * 22 8 6 25 25 C 1.36534 * 108.02760 * 359.59618 * 5 4 3 26 26 H 1.09001 * 109.46948 * 270.00479 * 1 2 3 27 27 H 1.09005 * 109.46741 * 30.00290 * 1 2 3 28 28 H 1.08995 * 109.46753 * 150.00188 * 1 2 3 29 29 H 1.08005 * 125.61132 * 0.03160 * 3 2 1 30 30 H 1.09004 * 110.36839 * 85.24810 * 9 8 6 31 31 H 1.08995 * 110.37517 * 322.92309 * 9 8 6 32 32 H 0.97000 * 120.00410 * 87.20011 * 12 10 9 33 33 H 0.96995 * 120.00147 * 180.02562 * 16 15 13 34 34 H 1.09007 * 110.72112 * 153.86341 * 21 10 9 35 35 H 1.08999 * 110.72697 * 277.13701 * 21 10 9 36 36 H 1.08999 * 109.47575 * 302.19548 * 24 22 8 37 37 H 1.09008 * 109.46550 * 62.19505 * 24 22 8 38 38 H 1.09003 * 109.47111 * 182.18882 * 24 22 8 39 39 H 1.07996 * 126.65143 * 180.26332 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5859 0.6803 0.0055 5 6 3.6260 -0.6683 0.0001 6 6 4.8378 -1.4943 0.0007 7 8 4.7470 -2.7078 0.0012 8 7 6.0521 -0.9094 0.0006 9 6 6.3063 0.5427 0.0012 10 6 7.7212 0.6979 -0.6102 11 1 7.6844 0.6516 -1.6985 12 7 8.3538 1.9408 -0.1613 13 6 8.2328 3.0802 -0.9111 14 1 7.6714 3.0625 -1.8336 15 6 8.8370 4.2564 -0.4887 16 7 9.5216 4.2778 0.6352 17 14 8.6785 5.8088 -1.5155 18 1 7.2443 6.1699 -1.6486 19 1 9.4082 6.9184 -0.8510 20 1 9.2565 5.5723 -2.8628 21 6 8.4507 -0.5402 -0.0252 22 6 7.3425 -1.6139 0.0006 23 1 7.4191 -2.2473 -0.8832 24 6 7.4713 -2.4638 1.2663 25 6 2.3408 -1.1293 0.0001 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.9771 2.1145 0.0005 30 1 6.2885 0.9306 1.0197 31 1 5.5686 1.0573 -0.6145 32 1 8.8583 1.9566 0.6671 33 1 9.9434 5.0998 0.9305 34 1 9.2702 -0.8476 -0.6750 35 1 8.8124 -0.3345 0.9822 36 1 7.3741 -1.8253 2.1443 37 1 6.6858 -3.2196 1.2779 38 1 8.4457 -2.9523 1.2783 39 1 2.0266 -2.1625 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989299800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:21 Heat of formation + Delta-G solvation = -27.000100 kcal Electronic energy + Delta-G solvation = -21789.572869 eV Core-core repulsion = 18505.357804 eV Total energy + Delta-G solvation = -3284.215065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -43.72481 -41.11708 -38.84414 -36.04977 -35.19763 -33.36239 -33.03999 -31.27498 -30.11297 -28.14591 -26.80740 -25.94054 -24.81453 -22.35040 -21.95002 -21.77596 -20.08109 -19.26566 -18.33761 -17.87767 -17.46107 -17.08950 -16.66527 -16.02238 -15.49898 -15.30076 -14.96663 -14.67107 -14.36361 -14.26166 -13.96837 -13.94097 -13.78532 -13.51287 -13.47516 -13.08580 -12.86708 -12.81696 -12.55394 -12.36285 -12.15478 -12.06849 -11.75819 -11.54609 -11.35274 -10.96296 -10.73523 -9.89982 -9.51230 -9.07202 -7.94788 -5.25268 0.00116 1.32246 1.50546 1.52180 1.58179 1.60411 2.03979 2.07738 2.57084 3.32095 3.36288 3.73760 3.80501 3.82588 3.94101 4.02489 4.13711 4.24258 4.32394 4.43252 4.47626 4.61920 4.70009 4.73454 4.82118 4.88318 4.95255 5.02420 5.05318 5.06825 5.12719 5.19973 5.32552 5.36420 5.52566 5.53251 5.90644 6.25344 6.32220 6.88218 7.33709 8.03479 8.28953 9.27775 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014996 B = 0.005324 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.704116 B = 5258.232632 C = 6874.947898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.201 4.201 3 C -0.008 4.008 4 O -0.170 6.170 5 C -0.104 4.104 6 C 0.608 3.392 7 O -0.556 6.556 8 N -0.600 5.600 9 C 0.091 3.909 10 C 0.166 3.834 11 H 0.067 0.933 12 N -0.720 5.720 13 C -0.248 4.248 14 H 0.077 0.923 15 C -0.066 4.066 16 N -0.966 5.966 17 Si 0.970 3.030 18 H -0.277 1.277 19 H -0.297 1.297 20 H -0.278 1.278 21 C -0.124 4.124 22 C 0.136 3.864 23 H 0.085 0.915 24 C -0.153 4.153 25 C -0.120 4.120 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.242 0.758 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.378 0.622 33 H 0.252 0.748 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.077 -9.543 -0.963 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.202 4.202 3 C -0.078 4.078 4 O -0.065 6.065 5 C -0.156 4.156 6 C 0.399 3.601 7 O -0.438 6.438 8 N -0.331 5.331 9 C -0.035 4.035 10 C 0.055 3.945 11 H 0.085 0.915 12 N -0.359 5.359 13 C -0.379 4.379 14 H 0.095 0.905 15 C -0.259 4.259 16 N -0.616 5.616 17 Si 0.799 3.201 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.204 1.204 21 C -0.163 4.163 22 C 0.033 3.967 23 H 0.103 0.897 24 C -0.211 4.211 25 C -0.141 4.141 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.258 0.742 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.211 0.789 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.909 -9.895 -1.102 17.105 hybrid contribution 0.158 0.996 0.047 1.009 sum -13.751 -8.899 -1.055 16.413 Atomic orbital electron populations 1.20259 0.86116 1.03967 1.03219 1.20846 0.99259 0.91298 1.08780 1.25118 0.79287 1.01850 1.01505 1.84267 1.30544 1.21305 1.70421 1.21916 0.95999 0.81268 1.16374 1.16462 0.80923 0.85913 0.76851 1.90792 1.86197 1.12965 1.53885 1.48543 1.05260 1.08861 1.70484 1.23231 1.00625 0.78607 1.01023 1.21440 0.89778 0.86112 0.97127 0.91496 1.42401 1.61261 1.05592 1.26671 1.19580 1.26597 0.88481 1.03242 0.90475 1.25499 1.00621 1.00972 0.98763 1.69792 1.39896 1.27712 1.24152 0.85276 0.77610 0.79230 0.78016 1.20352 1.22314 1.20419 1.22971 0.97066 0.93461 1.02772 1.21723 0.81205 0.93963 0.99761 0.89743 1.22072 1.03307 0.99614 0.96114 1.22054 0.90212 1.01425 1.00389 0.90374 0.89675 0.90793 0.74213 0.92690 0.90945 0.78934 0.93911 0.88362 0.90406 0.93103 0.92714 0.89087 0.81840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.39 71.24 0.74 -0.29 16 2 C -0.20 -4.22 6.14 -20.06 -0.12 -4.34 16 3 C -0.01 -0.18 12.00 67.10 0.81 0.62 16 4 O -0.17 -5.12 7.86 -5.05 -0.04 -5.16 16 5 C -0.10 -3.28 6.93 24.07 0.17 -3.11 16 6 C 0.61 21.18 7.61 86.44 0.66 21.84 16 7 O -0.56 -20.99 15.91 -4.32 -0.07 -21.06 16 8 N -0.60 -20.05 3.07 -792.73 -2.43 -22.48 16 9 C 0.09 3.29 5.86 86.86 0.51 3.80 16 10 C 0.17 6.27 3.71 46.38 0.17 6.44 16 11 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 12 N -0.72 -34.27 5.24 -316.38 -1.66 -35.92 16 13 C -0.25 -13.05 9.96 84.03 0.84 -12.21 16 14 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 15 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 16 N -0.97 -56.80 13.06 21.65 0.28 -56.52 16 17 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 21 C -0.12 -3.77 6.12 31.78 0.19 -3.58 16 22 C 0.14 3.98 3.46 45.34 0.16 4.14 16 23 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 24 C -0.15 -4.06 9.09 71.98 0.65 -3.41 16 25 C -0.12 -3.17 10.57 22.39 0.24 -2.93 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.24 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.07 2.70 6.23 -2.39 -0.01 2.68 16 32 H 0.38 19.27 7.76 -92.71 -0.72 18.55 16 33 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.08 2.42 7.71 -2.39 -0.02 2.40 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.59 6.90 -2.38 -0.02 1.58 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.16 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -65.67 327.44 3.92 -61.74 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.34 Total: 29.27 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.47 Total: 3.83 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.81 Total: -114.93 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.11 Total: -26.22 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -65.67 3.92 -61.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989299800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.743 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds