Wall clock time and date at job start Tue Mar 31 2020 01:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35132 * 126.43881 * 2 1 4 4 O 1.33935 * 108.76455 * 179.75508 * 3 2 1 5 5 C 1.34919 * 109.38475 * 0.40056 * 4 3 2 6 6 C 1.46652 * 125.98755 * 179.86285 * 5 4 3 7 7 O 1.21695 * 120.00035 * 179.69243 * 6 5 4 8 8 N 1.34773 * 120.00157 * 359.69332 * 6 5 4 9 9 C 1.47429 * 125.64767 * 0.05361 * 8 6 5 10 10 C 1.54916 * 104.83201 * 204.08393 * 9 8 6 11 11 H 1.08997 * 111.03660 * 81.07608 * 10 9 8 12 12 N 1.46501 * 111.00329 * 204.91390 * 10 9 8 13 13 C 1.36932 * 119.99845 * 267.19520 * 12 10 9 14 14 H 1.08002 * 120.00437 * 0.02562 * 13 12 10 15 15 C 1.38811 * 119.99901 * 179.97438 * 13 12 10 16 16 N 1.31620 * 120.00372 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99955 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99982 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99472 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00079 * 17 15 13 21 21 C 1.55156 * 101.58255 * 322.98856 * 10 9 8 22 22 C 1.47024 * 125.65216 * 179.97438 * 8 6 5 23 23 H 1.08996 * 109.88528 * 298.40535 * 22 8 6 24 24 C 1.53005 * 109.87813 * 59.56836 * 22 8 6 25 25 C 1.36538 * 108.02195 * 359.60084 * 5 4 3 26 26 H 1.09001 * 109.47081 * 269.99772 * 1 2 3 27 27 H 1.08998 * 109.46959 * 30.00147 * 1 2 3 28 28 H 1.09003 * 109.47045 * 150.00591 * 1 2 3 29 29 H 1.07993 * 125.61880 * 0.03370 * 3 2 1 30 30 H 1.08995 * 110.36823 * 85.24764 * 9 8 6 31 31 H 1.09004 * 110.36646 * 322.91647 * 9 8 6 32 32 H 0.97000 * 119.99725 * 87.19954 * 12 10 9 33 33 H 0.96993 * 120.00251 * 180.02562 * 16 15 13 34 34 H 1.09000 * 110.72315 * 153.86384 * 21 10 9 35 35 H 1.09002 * 110.71836 * 277.14435 * 21 10 9 36 36 H 1.09002 * 109.47006 * 177.80633 * 24 22 8 37 37 H 1.08995 * 109.47113 * 297.80754 * 24 22 8 38 38 H 1.08998 * 109.47470 * 57.81266 * 24 22 8 39 39 H 1.08001 * 126.64656 * 180.21902 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0054 5 6 3.6261 -0.6681 0.0001 6 6 4.8379 -1.4940 0.0006 7 8 4.7472 -2.7076 0.0010 8 7 6.0521 -0.9091 0.0006 9 6 6.3062 0.5432 0.0012 10 6 7.7211 0.6984 -0.6102 11 1 7.6843 0.6521 -1.6986 12 7 8.3536 1.9413 -0.1614 13 6 8.2326 3.0807 -0.9112 14 1 7.6705 3.0632 -1.8333 15 6 8.8314 4.2585 -0.4856 16 7 8.7155 5.3536 -1.2066 17 14 9.8029 4.2889 1.1095 18 1 8.8970 4.6348 2.2343 19 1 10.4021 2.9515 1.3499 20 1 10.8819 5.3046 1.0127 21 6 8.4508 -0.5397 -0.0253 22 6 7.3426 -1.6134 0.0015 23 1 7.4342 -2.2183 0.9036 24 6 7.4506 -2.5034 -1.2384 25 6 2.3409 -1.1291 0.0001 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8901 -0.5138 29 1 1.9770 2.1145 0.0005 30 1 6.2885 0.9310 1.0196 31 1 5.5684 1.0576 -0.6146 32 1 8.8582 1.9571 0.6669 33 1 9.1343 6.1764 -0.9094 34 1 9.2702 -0.8470 -0.6751 35 1 8.8123 -0.3339 0.9822 36 1 8.4248 -2.9921 -1.2511 37 1 6.6653 -3.2588 -1.2128 38 1 7.3386 -1.8931 -2.1345 39 1 2.0267 -2.1624 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989299804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:26 Heat of formation + Delta-G solvation = -23.749053 kcal Electronic energy + Delta-G solvation = -21857.083881 eV Core-core repulsion = 18573.009792 eV Total energy + Delta-G solvation = -3284.074089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.73049 -41.16532 -38.91492 -36.16297 -35.20546 -33.57033 -33.10116 -31.28122 -30.47066 -28.16060 -26.84164 -25.81137 -24.72895 -22.53733 -22.01569 -21.66353 -20.16338 -19.66287 -18.49693 -17.67295 -17.53418 -16.96860 -16.69993 -16.14139 -15.51933 -15.37926 -14.74395 -14.70421 -14.64094 -14.28806 -14.08304 -13.96173 -13.93456 -13.57062 -13.44954 -13.23510 -13.13292 -12.85449 -12.56335 -12.28575 -12.18396 -11.96708 -11.83049 -11.49763 -11.38279 -11.00328 -10.74038 -9.92432 -9.54198 -9.35867 -8.01887 -5.38195 -0.00661 1.31476 1.41334 1.43997 1.51150 1.58750 2.03719 2.05827 2.49629 3.23611 3.27279 3.65243 3.74453 3.80525 3.81951 4.01506 4.03679 4.26821 4.31456 4.36920 4.42178 4.61099 4.66670 4.73584 4.85396 4.87836 4.93513 4.98725 5.03582 5.06471 5.11509 5.18307 5.27893 5.39807 5.51985 5.76405 5.89793 6.20752 6.29392 6.87129 7.06146 7.78622 7.99104 9.18987 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.005325 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.296647 B = 5256.839183 C = 6586.630071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.200 4.200 3 C -0.009 4.009 4 O -0.170 6.170 5 C -0.105 4.105 6 C 0.610 3.390 7 O -0.554 6.554 8 N -0.601 5.601 9 C 0.087 3.913 10 C 0.172 3.828 11 H 0.065 0.935 12 N -0.735 5.735 13 C -0.236 4.236 14 H 0.058 0.942 15 C -0.056 4.056 16 N -0.981 5.981 17 Si 0.951 3.049 18 H -0.280 1.280 19 H -0.246 1.246 20 H -0.298 1.298 21 C -0.127 4.127 22 C 0.136 3.864 23 H 0.085 0.915 24 C -0.156 4.156 25 C -0.120 4.120 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.240 0.760 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.370 0.630 33 H 0.258 0.742 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 -13.427 4.563 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.202 4.202 3 C -0.078 4.078 4 O -0.066 6.066 5 C -0.156 4.156 6 C 0.400 3.600 7 O -0.436 6.436 8 N -0.332 5.332 9 C -0.038 4.038 10 C 0.061 3.939 11 H 0.083 0.917 12 N -0.378 5.378 13 C -0.367 4.367 14 H 0.076 0.924 15 C -0.248 4.248 16 N -0.631 5.631 17 Si 0.779 3.221 18 H -0.206 1.206 19 H -0.170 1.170 20 H -0.225 1.225 21 C -0.166 4.166 22 C 0.033 3.967 23 H 0.103 0.897 24 C -0.214 4.214 25 C -0.140 4.140 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.256 0.744 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.205 0.795 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.102 -13.773 4.384 18.225 hybrid contribution 0.377 0.661 0.679 1.020 sum -10.725 -13.111 5.063 17.680 Atomic orbital electron populations 1.20259 0.86142 1.03938 1.03249 1.20844 0.99257 0.91316 1.08744 1.25101 0.79332 1.01832 1.01559 1.84269 1.30505 1.21347 1.70431 1.21944 0.96075 0.81252 1.16364 1.16420 0.80882 0.85881 0.76813 1.90796 1.86158 1.12909 1.53747 1.48514 1.05311 1.08743 1.70678 1.23216 1.00374 0.78794 1.01456 1.21369 0.89798 0.85362 0.97330 0.91713 1.42552 1.62375 1.06514 1.26319 1.19001 1.26962 0.87521 1.03229 0.92367 1.25459 1.02117 0.95079 1.02128 1.69876 1.50635 1.01083 1.41462 0.85470 0.78450 0.78324 0.79902 1.20600 1.17015 1.22493 1.23024 0.97237 0.93156 1.03136 1.21726 0.81089 0.93892 0.99954 0.89653 1.22104 1.03432 0.99381 0.96454 1.22054 0.90224 1.01401 1.00368 0.90291 0.89785 0.90773 0.74387 0.91612 0.91302 0.79526 0.93277 0.87817 0.89533 0.88926 0.92727 0.93023 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.39 71.24 0.74 -0.32 16 2 C -0.20 -4.24 6.14 -20.06 -0.12 -4.36 16 3 C -0.01 -0.20 12.00 67.10 0.81 0.61 16 4 O -0.17 -5.12 7.86 -5.13 -0.04 -5.16 16 5 C -0.10 -3.25 6.93 24.07 0.17 -3.09 16 6 C 0.61 20.56 7.60 86.44 0.66 21.22 16 7 O -0.55 -20.27 15.77 -4.33 -0.07 -20.34 16 8 N -0.60 -19.07 3.08 -792.70 -2.44 -21.51 16 9 C 0.09 2.99 5.86 86.86 0.51 3.50 16 10 C 0.17 6.09 3.71 46.39 0.17 6.26 16 11 H 0.06 2.46 8.09 -2.39 -0.02 2.44 16 12 N -0.74 -31.83 5.05 -316.37 -1.60 -33.42 16 13 C -0.24 -12.78 10.44 84.03 0.88 -11.91 16 14 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 15 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 16 N -0.98 -60.93 13.97 21.65 0.30 -60.63 16 17 Si 0.95 43.20 27.73 68.60 1.90 45.11 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.25 -9.83 6.52 99.48 0.65 -9.19 16 20 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 21 C -0.13 -3.40 6.14 31.78 0.20 -3.21 16 22 C 0.14 3.65 3.50 45.34 0.16 3.81 16 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 24 C -0.16 -3.86 9.05 71.98 0.65 -3.21 16 25 C -0.12 -3.13 10.57 22.39 0.24 -2.89 16 26 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.24 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 2.56 6.23 -2.39 -0.01 2.54 16 32 H 0.37 15.17 5.63 -92.71 -0.52 14.65 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.10 2.44 7.83 -2.39 -0.02 2.42 16 35 H 0.09 2.17 8.00 -2.39 -0.02 2.15 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.52 6.76 -2.39 -0.02 1.51 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -69.34 324.04 4.05 -65.30 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.48 Total: 26.92 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.51 Total: 3.73 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -3.74 Total: -115.56 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.11 Total: -25.49 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.90 Total: 45.11 kcal Total: -69.34 4.05 -65.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989299804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.549 kcal (2) G-P(sol) polarization free energy of solvation -69.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds