Wall clock time and date at job start Tue Mar 31 2020 01:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35131 * 126.44008 * 2 1 4 4 O 1.33934 * 108.76656 * 179.97438 * 3 2 1 5 5 C 1.34904 * 109.38785 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.99051 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00017 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00005 * 0.03133 * 6 5 4 9 9 C 1.47020 * 125.64716 * 0.03728 * 8 6 5 10 10 C 1.54323 * 107.27266 * 181.02289 * 9 8 6 11 11 H 1.08999 * 110.87578 * 263.75949 * 10 9 8 12 12 N 1.46506 * 110.71844 * 140.55403 * 10 9 8 13 13 C 1.36938 * 119.99589 * 91.48308 * 12 10 9 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 10 15 15 C 1.38815 * 119.99408 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00325 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99550 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47228 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47239 * 120.00535 * 17 15 13 20 20 H 1.48501 * 109.46793 * 240.00116 * 17 15 13 21 21 C 1.55158 * 102.93912 * 22.19413 * 10 9 8 22 22 C 1.47418 * 125.65111 * 179.97438 * 8 6 5 23 23 H 1.09000 * 110.37211 * 274.74402 * 22 8 6 24 24 C 1.53004 * 110.45714 * 37.02124 * 22 8 6 25 25 C 1.36552 * 108.02315 * 0.26011 * 5 4 3 26 26 H 1.09002 * 109.46936 * 90.02736 * 1 2 3 27 27 H 1.09000 * 109.47005 * 210.02127 * 1 2 3 28 28 H 1.08997 * 109.47331 * 330.02434 * 1 2 3 29 29 H 1.08004 * 125.61866 * 0.03492 * 3 2 1 30 30 H 1.09001 * 109.88635 * 61.60521 * 9 8 6 31 31 H 1.09003 * 109.88373 * 300.44521 * 9 8 6 32 32 H 0.96995 * 120.00050 * 271.20516 * 12 10 9 33 33 H 0.97000 * 119.99693 * 180.02562 * 16 15 13 34 34 H 1.08997 * 111.00318 * 82.57182 * 21 10 9 35 35 H 1.09006 * 111.00130 * 206.42230 * 21 10 9 36 36 H 1.09004 * 109.46950 * 175.46438 * 24 22 8 37 37 H 1.08994 * 109.47298 * 295.46282 * 24 22 8 38 38 H 1.08994 * 109.47303 * 55.46484 * 24 22 8 39 39 H 1.07993 * 126.64422 * 179.69344 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5857 0.6805 0.0006 5 6 3.6261 -0.6680 0.0004 6 6 4.8380 -1.4939 0.0003 7 8 4.7473 -2.7075 -0.0003 8 7 6.0522 -0.9089 0.0011 9 6 6.3055 0.5393 0.0028 10 6 7.8358 0.7367 -0.0231 11 1 8.2246 0.8919 0.9833 12 7 8.1993 1.8563 -0.8955 13 6 8.3184 3.1179 -0.3765 14 1 8.1442 3.2877 0.6757 15 6 8.6633 4.1785 -1.2030 16 7 8.8752 3.9716 -2.4855 17 14 8.8252 5.8997 -0.4953 18 1 8.5372 5.8651 0.9611 19 1 10.2071 6.3970 -0.7144 20 1 7.8605 6.8050 -1.1699 21 6 8.3494 -0.6050 -0.6092 22 6 7.3461 -1.6152 0.0017 23 1 7.6382 -1.8714 1.0201 24 6 7.2677 -2.8759 -0.8618 25 6 2.3408 -1.1291 -0.0062 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 1.9769 2.1146 0.0005 30 1 5.8892 0.9874 0.9050 31 1 5.8578 0.9950 -0.8804 32 1 8.3594 1.7031 -1.8398 33 1 9.1165 4.7128 -3.0628 34 1 8.2898 -0.6042 -1.6975 35 1 9.3659 -0.8135 -0.2752 36 1 8.2519 -3.3412 -0.9156 37 1 6.5587 -3.5756 -0.4195 38 1 6.9367 -2.6089 -1.8653 39 1 2.0268 -2.1623 -0.0128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989299809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:31 Heat of formation + Delta-G solvation = -6.450454 kcal Electronic energy + Delta-G solvation = -21827.384640 eV Core-core repulsion = 18544.060675 eV Total energy + Delta-G solvation = -3283.323965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.64099 -39.79371 -37.37269 -34.36333 -34.09868 -31.93157 -31.42142 -30.18092 -28.46051 -27.29558 -25.39736 -24.23377 -23.33429 -21.13549 -20.89743 -20.29071 -18.81673 -17.34288 -17.09135 -16.55732 -16.23310 -15.89330 -15.10102 -14.50753 -13.92242 -13.70624 -13.68579 -13.42499 -13.29660 -13.26218 -12.87959 -12.74056 -12.60741 -12.15061 -11.94150 -11.85364 -11.70561 -11.27013 -11.05496 -10.81041 -10.70190 -10.31824 -10.06269 -9.79978 -9.75108 -9.70346 -9.03851 -8.65827 -8.30226 -7.12151 -5.87095 -3.18042 1.16220 2.30422 2.76765 3.27201 3.32468 3.37449 3.43744 3.45649 4.47615 4.57555 4.73461 4.90604 5.00837 5.09697 5.21312 5.29088 5.46356 5.46529 5.56050 5.58184 5.68209 5.70719 5.81503 5.85778 5.88299 5.95100 6.09818 6.12967 6.25508 6.35885 6.40931 6.43890 6.54085 6.64177 6.84909 6.97819 7.61418 7.69805 8.22428 8.30350 9.42306 9.95737 10.30826 11.34962 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.005367 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.457646 B = 5215.618797 C = 6805.814475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.201 4.201 3 C -0.010 4.010 4 O -0.148 6.148 5 C -0.065 4.065 6 C 0.612 3.388 7 O -0.533 6.533 8 N -0.599 5.599 9 C 0.075 3.925 10 C 0.172 3.828 11 H 0.069 0.931 12 N -0.712 5.712 13 C -0.248 4.248 14 H 0.073 0.927 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.907 3.093 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.138 4.138 22 C 0.137 3.863 23 H 0.076 0.924 24 C -0.161 4.161 25 C -0.127 4.127 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.207 0.793 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.387 0.613 33 H 0.256 0.744 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.451 -9.267 5.074 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.202 4.202 3 C -0.080 4.080 4 O -0.042 6.042 5 C -0.117 4.117 6 C 0.400 3.600 7 O -0.414 6.414 8 N -0.331 5.331 9 C -0.050 4.050 10 C 0.060 3.940 11 H 0.087 0.913 12 N -0.352 5.352 13 C -0.379 4.379 14 H 0.091 0.909 15 C -0.205 4.205 16 N -0.577 5.577 17 Si 0.738 3.262 18 H -0.204 1.204 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.177 4.177 22 C 0.034 3.966 23 H 0.094 0.906 24 C -0.219 4.219 25 C -0.148 4.148 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.223 0.777 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.222 0.778 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.228 -9.553 5.163 15.620 hybrid contribution -0.146 1.130 -0.042 1.140 sum -11.375 -8.423 5.121 15.052 Atomic orbital electron populations 1.20145 0.88850 1.02598 1.02148 1.20435 0.97521 0.92446 1.09782 1.24263 0.80337 1.00061 1.03373 1.84276 1.28751 1.21562 1.69615 1.22095 0.95969 0.80772 1.12881 1.16233 0.80468 0.85880 0.77395 1.90788 1.85638 1.12080 1.52855 1.48545 1.04708 1.09344 1.70464 1.23415 1.01627 0.77831 1.02164 1.21193 0.89758 0.87558 0.95526 0.91289 1.42386 1.81524 1.03137 1.08104 1.19311 1.40214 0.84601 0.93793 0.90862 1.24767 1.01972 0.98176 0.95541 1.69672 1.53482 1.31025 1.03483 0.86119 0.77353 0.84602 0.78096 1.20438 1.21758 1.21779 1.23200 0.98109 0.94952 1.01400 1.21932 0.82191 0.92971 0.99526 0.90583 1.22135 1.02293 0.97456 0.99980 1.21745 0.90515 1.00294 1.02253 0.91442 0.91500 0.91574 0.77669 0.91962 0.90483 0.77842 0.93377 0.90423 0.89945 0.92051 0.90122 0.92658 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.39 36.00 0.37 -0.30 16 2 C -0.20 -2.37 6.14 -104.93 -0.64 -3.01 16 3 C -0.01 -0.12 12.00 29.63 0.36 0.23 16 4 O -0.15 -2.31 8.28 5.01 0.04 -2.27 16 5 C -0.06 -1.04 6.95 -36.79 -0.26 -1.29 16 6 C 0.61 10.62 7.60 -12.86 -0.10 10.53 16 7 O -0.53 -9.88 14.59 5.19 0.08 -9.80 16 8 N -0.60 -10.07 3.24 -164.58 -0.53 -10.61 16 9 C 0.08 1.36 5.30 -3.07 -0.02 1.34 16 10 C 0.17 3.25 3.61 -66.09 -0.24 3.01 16 11 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 12 N -0.71 -16.93 5.15 -51.65 -0.27 -17.20 16 13 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 16 N -0.93 -27.14 13.06 55.49 0.72 -26.41 16 17 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C -0.14 -2.18 6.13 -24.57 -0.15 -2.33 16 22 C 0.14 2.05 3.76 -66.41 -0.25 1.80 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 24 C -0.16 -2.27 8.60 37.16 0.32 -1.95 16 25 C -0.13 -1.76 10.57 -39.39 -0.42 -2.18 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.21 1.75 8.06 -52.48 -0.42 1.33 16 30 H 0.06 1.11 7.79 -51.93 -0.40 0.71 16 31 H 0.08 1.55 7.56 -51.93 -0.39 1.16 16 32 H 0.39 9.86 7.75 -40.82 -0.32 9.55 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.08 1.30 7.93 -51.93 -0.41 0.88 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.24 6.09 -51.93 -0.32 0.92 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -30.57 326.16 -6.95 -37.51 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.61 Total: 8.47 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.27 Total: -1.18 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.08 Total: -54.22 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.12 Total: -12.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.57 -6.95 -37.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989299809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.061 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds