Wall clock time and date at job start Tue Mar 31 2020 01:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35131 * 126.44008 * 2 1 4 4 O 1.33934 * 108.76656 * 179.97438 * 3 2 1 5 5 C 1.34904 * 109.38785 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.99051 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00017 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00005 * 0.03133 * 6 5 4 9 9 C 1.47020 * 125.64716 * 0.03728 * 8 6 5 10 10 C 1.54323 * 107.27266 * 181.02289 * 9 8 6 11 11 H 1.08999 * 110.87578 * 263.75949 * 10 9 8 12 12 N 1.46506 * 110.71844 * 140.55403 * 10 9 8 13 13 C 1.36938 * 119.99589 * 91.48308 * 12 10 9 14 14 H 1.07999 * 120.00325 * 359.97438 * 13 12 10 15 15 C 1.38815 * 119.99408 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00325 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99550 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47228 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47239 * 120.00535 * 17 15 13 20 20 H 1.48501 * 109.46793 * 240.00116 * 17 15 13 21 21 C 1.55158 * 102.93912 * 22.19413 * 10 9 8 22 22 C 1.47418 * 125.65111 * 179.97438 * 8 6 5 23 23 H 1.09000 * 110.37211 * 274.74402 * 22 8 6 24 24 C 1.53004 * 110.45714 * 37.02124 * 22 8 6 25 25 C 1.36552 * 108.02315 * 0.26011 * 5 4 3 26 26 H 1.09002 * 109.46936 * 90.02736 * 1 2 3 27 27 H 1.09000 * 109.47005 * 210.02127 * 1 2 3 28 28 H 1.08997 * 109.47331 * 330.02434 * 1 2 3 29 29 H 1.08004 * 125.61866 * 0.03492 * 3 2 1 30 30 H 1.09001 * 109.88635 * 61.60521 * 9 8 6 31 31 H 1.09003 * 109.88373 * 300.44521 * 9 8 6 32 32 H 0.96995 * 120.00050 * 271.20516 * 12 10 9 33 33 H 0.97000 * 119.99693 * 180.02562 * 16 15 13 34 34 H 1.08997 * 111.00318 * 82.57182 * 21 10 9 35 35 H 1.09006 * 111.00130 * 206.42230 * 21 10 9 36 36 H 1.09004 * 109.46950 * 175.46438 * 24 22 8 37 37 H 1.08994 * 109.47298 * 295.46282 * 24 22 8 38 38 H 1.08994 * 109.47303 * 55.46484 * 24 22 8 39 39 H 1.07993 * 126.64422 * 179.69344 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5857 0.6805 0.0006 5 6 3.6261 -0.6680 0.0004 6 6 4.8380 -1.4939 0.0003 7 8 4.7473 -2.7075 -0.0003 8 7 6.0522 -0.9089 0.0011 9 6 6.3055 0.5393 0.0028 10 6 7.8358 0.7367 -0.0231 11 1 8.2246 0.8919 0.9833 12 7 8.1993 1.8563 -0.8955 13 6 8.3184 3.1179 -0.3765 14 1 8.1442 3.2877 0.6757 15 6 8.6633 4.1785 -1.2030 16 7 8.8752 3.9716 -2.4855 17 14 8.8252 5.8997 -0.4953 18 1 8.5372 5.8651 0.9611 19 1 10.2071 6.3970 -0.7144 20 1 7.8605 6.8050 -1.1699 21 6 8.3494 -0.6050 -0.6092 22 6 7.3461 -1.6152 0.0017 23 1 7.6382 -1.8714 1.0201 24 6 7.2677 -2.8759 -0.8618 25 6 2.3408 -1.1291 -0.0062 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 1.9769 2.1146 0.0005 30 1 5.8892 0.9874 0.9050 31 1 5.8578 0.9950 -0.8804 32 1 8.3594 1.7031 -1.8398 33 1 9.1165 4.7128 -3.0628 34 1 8.2898 -0.6042 -1.6975 35 1 9.3659 -0.8135 -0.2752 36 1 8.2519 -3.3412 -0.9156 37 1 6.5587 -3.5756 -0.4195 38 1 6.9367 -2.6089 -1.8653 39 1 2.0268 -2.1623 -0.0128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989299809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:30 Heat of formation + Delta-G solvation = -25.478436 kcal Electronic energy + Delta-G solvation = -21828.209755 eV Core-core repulsion = 18544.060675 eV Total energy + Delta-G solvation = -3284.149080 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.71410 -41.13613 -38.79748 -36.02767 -35.18666 -33.35975 -33.08470 -31.24378 -30.13186 -28.13875 -26.73586 -25.95383 -24.76695 -22.36642 -22.00959 -21.78044 -20.01426 -19.23397 -18.27343 -17.87079 -17.42544 -17.12294 -16.69562 -16.06816 -15.49463 -15.31644 -14.92497 -14.76420 -14.35298 -14.29984 -14.00242 -13.94596 -13.60629 -13.46960 -13.33367 -13.13735 -12.94183 -12.85104 -12.55089 -12.37801 -12.18181 -12.07356 -11.74498 -11.58799 -11.13344 -10.93300 -10.73086 -9.85638 -9.50181 -9.08927 -7.95135 -5.25664 0.00889 1.32187 1.49841 1.50543 1.60188 1.62609 2.05697 2.07856 2.56703 3.33276 3.37497 3.75694 3.82073 3.82716 3.86145 4.02433 4.16893 4.26661 4.32051 4.46506 4.48420 4.62654 4.71387 4.76861 4.84139 4.87684 4.93108 5.03282 5.06744 5.09386 5.13924 5.20337 5.29530 5.47487 5.52529 5.54097 5.91625 6.24978 6.33948 6.91068 7.33094 8.03390 8.27985 9.28084 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.005367 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.457646 B = 5215.618797 C = 6805.814475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.201 4.201 3 C -0.009 4.009 4 O -0.171 6.171 5 C -0.105 4.105 6 C 0.608 3.392 7 O -0.551 6.551 8 N -0.602 5.602 9 C 0.095 3.905 10 C 0.166 3.834 11 H 0.076 0.924 12 N -0.723 5.723 13 C -0.243 4.243 14 H 0.081 0.919 15 C -0.069 4.069 16 N -0.968 5.968 17 Si 0.970 3.030 18 H -0.264 1.264 19 H -0.295 1.295 20 H -0.295 1.295 21 C -0.125 4.125 22 C 0.135 3.865 23 H 0.094 0.906 24 C -0.152 4.152 25 C -0.121 4.121 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.241 0.759 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.375 0.625 33 H 0.251 0.749 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.494 -9.304 6.359 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.202 4.202 3 C -0.079 4.079 4 O -0.066 6.066 5 C -0.156 4.156 6 C 0.398 3.602 7 O -0.433 6.433 8 N -0.333 5.333 9 C -0.031 4.031 10 C 0.055 3.945 11 H 0.094 0.906 12 N -0.362 5.362 13 C -0.375 4.375 14 H 0.099 0.901 15 C -0.262 4.262 16 N -0.618 5.618 17 Si 0.799 3.201 18 H -0.188 1.188 19 H -0.222 1.222 20 H -0.223 1.223 21 C -0.164 4.164 22 C 0.033 3.967 23 H 0.112 0.888 24 C -0.210 4.210 25 C -0.142 4.142 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.257 0.743 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.208 0.792 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.288 -9.629 6.494 16.908 hybrid contribution 0.069 1.081 -0.412 1.159 sum -12.219 -8.549 6.082 16.105 Atomic orbital electron populations 1.20254 0.86101 1.04008 1.03173 1.20846 0.99270 0.91313 1.08763 1.25095 0.79245 1.01843 1.01686 1.84241 1.30628 1.21393 1.70323 1.22007 0.96165 0.81245 1.16205 1.16449 0.80921 0.85944 0.76890 1.90764 1.86020 1.12713 1.53834 1.48566 1.05415 1.08751 1.70604 1.22963 1.00514 0.78685 1.00949 1.21388 0.90249 0.87588 0.95251 0.90560 1.42516 1.81860 1.03738 1.08089 1.19691 1.38093 0.85655 0.94047 0.90120 1.25525 1.02953 1.01772 0.95905 1.69821 1.55577 1.31655 1.04759 0.85124 0.76641 0.80189 0.78095 1.18823 1.22201 1.22263 1.23107 0.99431 0.93177 1.00654 1.22100 0.81091 0.92886 1.00639 0.88788 1.22049 1.03486 0.96724 0.98704 1.22056 0.90216 1.01414 1.00528 0.90504 0.90702 0.89633 0.74290 0.91951 0.93002 0.79203 0.93999 0.91487 0.87812 0.89334 0.91256 0.94050 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.39 71.23 0.74 -0.33 16 2 C -0.20 -4.35 6.14 -20.06 -0.12 -4.48 16 3 C -0.01 -0.21 12.00 67.10 0.81 0.60 16 4 O -0.17 -5.30 8.28 -4.97 -0.04 -5.34 16 5 C -0.10 -3.36 6.95 24.08 0.17 -3.19 16 6 C 0.61 21.26 7.60 86.44 0.66 21.92 16 7 O -0.55 -20.50 14.59 -4.33 -0.06 -20.56 16 8 N -0.60 -20.17 3.24 -792.82 -2.57 -22.74 16 9 C 0.09 3.44 5.30 86.73 0.46 3.90 16 10 C 0.17 6.18 3.61 46.18 0.17 6.34 16 11 H 0.08 2.75 8.09 -2.39 -0.02 2.73 16 12 N -0.72 -34.60 5.15 -317.31 -1.63 -36.23 16 13 C -0.24 -12.80 9.96 84.03 0.84 -11.97 16 14 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 15 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 16 N -0.97 -57.51 13.06 21.65 0.28 -57.22 16 17 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 21 C -0.12 -3.83 6.13 31.99 0.20 -3.63 16 22 C 0.13 3.89 3.76 45.47 0.17 4.06 16 23 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 24 C -0.15 -4.12 8.60 71.98 0.62 -3.51 16 25 C -0.12 -3.27 10.57 22.39 0.24 -3.03 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.24 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.06 2.23 7.79 -2.39 -0.02 2.22 16 31 H 0.05 2.15 7.56 -2.39 -0.02 2.13 16 32 H 0.38 19.53 7.75 -92.71 -0.72 18.81 16 33 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.07 2.22 7.93 -2.39 -0.02 2.20 16 35 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.07 6.09 -2.39 -0.01 2.06 16 38 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -66.24 326.16 3.74 -62.50 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.34 Total: 29.79 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.40 Total: 3.34 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -3.92 Total: -116.20 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.10 Total: -25.90 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -66.24 3.74 -62.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989299809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.024 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds