Wall clock time and date at job start Tue Mar 31 2020 00:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35127 * 125.61428 * 2 1 4 4 C 1.40366 * 107.11604 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.70578 * 0.02562 * 4 3 2 6 6 C 1.46661 * 125.98844 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00099 * 352.41470 * 6 5 4 8 8 N 1.34781 * 119.99871 * 172.40935 * 6 5 4 9 9 C 1.46924 * 120.62702 * 172.69872 * 8 6 5 10 10 C 1.53198 * 108.89106 * 126.46696 * 9 8 6 11 11 C 1.53037 * 109.31250 * 54.56310 * 10 9 8 12 12 N 1.46503 * 109.45599 * 178.62855 * 11 10 9 13 13 C 1.36940 * 119.99658 * 204.99612 * 12 11 10 14 14 H 1.07993 * 120.00161 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99587 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00118 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99799 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47007 * 60.00091 * 17 15 13 19 19 H 1.48500 * 109.47112 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47132 * 299.99918 * 17 15 13 21 21 C 1.53038 * 109.53734 * 298.63399 * 11 10 9 22 22 C 1.46966 * 120.65541 * 352.51813 * 8 6 5 23 23 O 1.33925 * 125.61495 * 180.33208 * 2 1 3 24 24 H 1.09007 * 109.47184 * 89.99832 * 1 2 3 25 25 H 1.08997 * 109.47090 * 209.99442 * 1 2 3 26 26 H 1.09000 * 109.46998 * 329.99979 * 1 2 3 27 27 H 1.07998 * 126.44636 * 0.04213 * 3 2 1 28 28 H 1.07993 * 126.65058 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.59146 * 6.60373 * 9 8 6 30 30 H 1.09003 * 109.58481 * 246.32277 * 9 8 6 31 31 H 1.08993 * 109.49450 * 174.51701 * 10 9 8 32 32 H 1.09002 * 109.49055 * 294.57688 * 10 9 8 33 33 H 1.08992 * 109.46353 * 58.65470 * 11 10 9 34 34 H 0.96995 * 120.00167 * 25.00393 * 12 11 10 35 35 H 0.97005 * 119.99841 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.50003 * 181.31909 * 21 11 10 37 37 H 1.09000 * 109.50077 * 301.41682 * 21 11 10 38 38 H 1.08999 * 109.46371 * 113.74913 * 22 8 6 39 39 H 1.09003 * 109.70957 * 353.46959 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7415 -1.6101 -0.0029 7 8 5.8623 -1.1571 -0.1425 8 7 4.5654 -2.9375 0.1505 9 6 5.6935 -3.8655 -0.0074 10 6 5.7926 -4.7433 1.2442 11 6 4.4460 -5.4273 1.4906 12 7 4.5466 -6.2932 2.6681 13 6 3.7049 -7.3647 2.8039 14 1 2.9671 -7.5717 2.0429 15 6 3.7999 -8.1847 3.9199 16 7 4.6987 -7.9321 4.8476 17 14 2.6522 -9.6469 4.1050 18 1 2.8435 -10.5742 2.9609 19 1 2.9549 -10.3564 5.3739 20 1 1.2453 -9.1721 4.1274 21 6 3.3690 -4.3665 1.7287 22 6 3.2423 -3.4844 0.4826 23 8 2.2869 -1.0887 -0.0063 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5138 27 1 1.9613 2.1260 0.0006 28 1 4.5113 1.2703 -0.0004 29 1 6.6171 -3.3002 -0.1314 30 1 5.5297 -4.4942 -0.8826 31 1 6.5636 -5.4997 1.0979 32 1 6.0492 -4.1237 2.1036 33 1 4.1788 -6.0271 0.6206 34 1 5.2094 -6.1073 3.3515 35 1 4.7649 -8.5050 5.6276 36 1 2.4149 -4.8547 1.9272 37 1 3.6478 -3.7504 2.5836 38 1 2.8762 -4.0819 -0.3523 39 1 2.5467 -2.6690 0.6811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989902398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:54 Heat of formation + Delta-G solvation = -3.919317 kcal Electronic energy + Delta-G solvation = -21704.184117 eV Core-core repulsion = 18420.969910 eV Total energy + Delta-G solvation = -3283.214207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.89342 -39.79326 -37.41265 -34.59798 -33.46275 -32.32610 -31.90939 -30.84668 -29.34085 -27.40694 -24.92170 -23.13002 -23.02500 -21.87700 -21.36423 -20.40926 -19.40344 -17.54607 -17.03601 -16.70334 -16.21217 -15.54308 -14.86952 -14.82619 -14.13737 -13.82732 -13.61521 -13.55662 -13.41620 -13.34794 -13.29577 -13.07043 -12.92345 -12.30990 -12.16126 -11.87740 -11.46070 -10.94560 -10.87433 -10.81494 -10.49043 -10.27507 -10.18426 -10.09122 -9.84048 -9.67259 -8.91501 -8.77036 -8.43566 -6.99257 -5.78634 -3.08074 0.95867 2.18062 2.44683 3.05007 3.21125 3.41973 3.46490 3.47684 4.33039 4.56314 4.60566 4.74829 5.01535 5.12696 5.16402 5.30880 5.32149 5.35487 5.42094 5.47128 5.53825 5.64271 5.67867 5.69882 5.86723 5.93104 6.08665 6.21916 6.23760 6.34932 6.39643 6.49388 6.59406 6.78376 6.87905 7.02912 7.40887 7.66606 8.05782 8.39546 9.50684 10.08083 10.43010 11.43861 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004099 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.031007 B = 6829.384742 C = 7713.197490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.009 3.991 3 C -0.224 4.224 4 C -0.121 4.121 5 C -0.073 4.073 6 C 0.600 3.400 7 O -0.531 6.531 8 N -0.596 5.596 9 C 0.116 3.884 10 C -0.139 4.139 11 C 0.178 3.822 12 N -0.724 5.724 13 C -0.242 4.242 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.149 4.149 22 C 0.097 3.903 23 O -0.153 6.153 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 16.448 -11.449 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.043 4.043 3 C -0.243 4.243 4 C -0.141 4.141 5 C -0.124 4.124 6 C 0.388 3.612 7 O -0.410 6.410 8 N -0.327 5.327 9 C -0.006 4.006 10 C -0.178 4.178 11 C 0.068 3.932 12 N -0.364 5.364 13 C -0.373 4.373 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.738 3.262 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.190 4.190 22 C -0.025 4.025 23 O -0.049 6.049 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.171 0.829 28 H 0.176 0.824 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.248 16.166 -11.518 20.810 hybrid contribution -0.482 -0.585 0.517 0.917 sum -6.729 15.581 -11.002 20.226 Atomic orbital electron populations 1.20418 0.84713 1.04577 1.03855 1.22968 0.94494 0.84705 1.02117 1.21554 0.92347 0.99679 1.10748 1.21913 0.98568 0.92914 1.00746 1.22077 0.81914 0.94540 1.13885 1.16699 0.85950 0.81298 0.77297 1.90842 1.22560 1.75647 1.51979 1.48085 1.11586 1.05249 1.67791 1.21705 0.89314 0.91141 0.98430 1.22210 0.99781 0.98754 0.97068 1.20179 0.91301 0.90122 0.91598 1.42428 1.42159 1.30077 1.21760 1.19193 1.11381 1.02841 1.03859 0.91206 1.24746 0.99286 0.99593 0.97200 1.69655 1.36706 1.40456 1.11232 0.86280 0.80351 0.82655 0.76959 1.21242 1.21697 1.21285 1.22674 1.02586 0.98075 0.95696 1.22274 0.82856 0.98666 0.98699 1.84259 1.16149 1.33816 1.70717 0.89675 0.89979 0.89075 0.82860 0.82375 0.89111 0.91153 0.90303 0.91693 0.93330 0.78232 0.93426 0.90504 0.92229 0.91364 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.41 36.01 0.37 -0.10 16 2 C 0.01 0.09 7.31 -35.41 -0.26 -0.17 16 3 C -0.22 -2.24 10.77 -39.89 -0.43 -2.67 16 4 C -0.12 -1.48 10.63 -39.39 -0.42 -1.90 16 5 C -0.07 -1.02 6.76 -36.79 -0.25 -1.27 16 6 C 0.60 9.62 7.65 -12.86 -0.10 9.52 16 7 O -0.53 -9.67 16.30 5.19 0.08 -9.59 16 8 N -0.60 -9.08 2.98 -174.28 -0.52 -9.60 16 9 C 0.12 1.71 6.44 -3.71 -0.02 1.69 16 10 C -0.14 -2.34 5.55 -26.61 -0.15 -2.48 16 11 C 0.18 3.45 2.73 -67.89 -0.19 3.27 16 12 N -0.72 -17.89 5.12 -53.39 -0.27 -18.17 16 13 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 17 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.15 -2.61 5.66 -26.62 -0.15 -2.76 16 22 C 0.10 1.41 6.09 -3.69 -0.02 1.39 16 23 O -0.15 -1.93 7.27 4.99 0.04 -1.90 16 24 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.38 10.20 7.80 -40.82 -0.32 9.89 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.32 4.28 -52.86 -0.23 1.09 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -32.10 323.72 -7.47 -39.57 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.52 Total: 7.68 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.85 Total: -2.66 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.07 Total: -55.06 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.12 Total: -11.48 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.10 -7.47 -39.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989902398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.651 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds