Wall clock time and date at job start Tue Mar 31 2020 00:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35127 * 125.61428 * 2 1 4 4 C 1.40366 * 107.11604 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.70578 * 0.02562 * 4 3 2 6 6 C 1.46661 * 125.98844 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00099 * 352.41470 * 6 5 4 8 8 N 1.34781 * 119.99871 * 172.40935 * 6 5 4 9 9 C 1.46924 * 120.62702 * 172.69872 * 8 6 5 10 10 C 1.53198 * 108.89106 * 126.46696 * 9 8 6 11 11 C 1.53037 * 109.31250 * 54.56310 * 10 9 8 12 12 N 1.46503 * 109.45599 * 178.62855 * 11 10 9 13 13 C 1.36940 * 119.99658 * 204.99612 * 12 11 10 14 14 H 1.07993 * 120.00161 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99587 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00118 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99799 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47007 * 60.00091 * 17 15 13 19 19 H 1.48500 * 109.47112 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47132 * 299.99918 * 17 15 13 21 21 C 1.53038 * 109.53734 * 298.63399 * 11 10 9 22 22 C 1.46966 * 120.65541 * 352.51813 * 8 6 5 23 23 O 1.33925 * 125.61495 * 180.33208 * 2 1 3 24 24 H 1.09007 * 109.47184 * 89.99832 * 1 2 3 25 25 H 1.08997 * 109.47090 * 209.99442 * 1 2 3 26 26 H 1.09000 * 109.46998 * 329.99979 * 1 2 3 27 27 H 1.07998 * 126.44636 * 0.04213 * 3 2 1 28 28 H 1.07993 * 126.65058 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.59146 * 6.60373 * 9 8 6 30 30 H 1.09003 * 109.58481 * 246.32277 * 9 8 6 31 31 H 1.08993 * 109.49450 * 174.51701 * 10 9 8 32 32 H 1.09002 * 109.49055 * 294.57688 * 10 9 8 33 33 H 1.08992 * 109.46353 * 58.65470 * 11 10 9 34 34 H 0.96995 * 120.00167 * 25.00393 * 12 11 10 35 35 H 0.97005 * 119.99841 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.50003 * 181.31909 * 21 11 10 37 37 H 1.09000 * 109.50077 * 301.41682 * 21 11 10 38 38 H 1.08999 * 109.46371 * 113.74913 * 22 8 6 39 39 H 1.09003 * 109.70957 * 353.46959 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7415 -1.6101 -0.0029 7 8 5.8623 -1.1571 -0.1425 8 7 4.5654 -2.9375 0.1505 9 6 5.6935 -3.8655 -0.0074 10 6 5.7926 -4.7433 1.2442 11 6 4.4460 -5.4273 1.4906 12 7 4.5466 -6.2932 2.6681 13 6 3.7049 -7.3647 2.8039 14 1 2.9671 -7.5717 2.0429 15 6 3.7999 -8.1847 3.9199 16 7 4.6987 -7.9321 4.8476 17 14 2.6522 -9.6469 4.1050 18 1 2.8435 -10.5742 2.9609 19 1 2.9549 -10.3564 5.3739 20 1 1.2453 -9.1721 4.1274 21 6 3.3690 -4.3665 1.7287 22 6 3.2423 -3.4844 0.4826 23 8 2.2869 -1.0887 -0.0063 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8900 0.5138 27 1 1.9613 2.1260 0.0006 28 1 4.5113 1.2703 -0.0004 29 1 6.6171 -3.3002 -0.1314 30 1 5.5297 -4.4942 -0.8826 31 1 6.5636 -5.4997 1.0979 32 1 6.0492 -4.1237 2.1036 33 1 4.1788 -6.0271 0.6206 34 1 5.2094 -6.1073 3.3515 35 1 4.7649 -8.5050 5.6276 36 1 2.4149 -4.8547 1.9272 37 1 3.6478 -3.7504 2.5836 38 1 2.8762 -4.0819 -0.3523 39 1 2.5467 -2.6690 0.6811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989902398.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:52 Heat of formation + Delta-G solvation = -24.314636 kcal Electronic energy + Delta-G solvation = -21705.068524 eV Core-core repulsion = 18420.969910 eV Total energy + Delta-G solvation = -3284.098614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.78530 -41.03760 -38.82400 -36.25121 -34.41198 -33.81420 -32.98953 -32.09695 -31.08069 -28.34348 -26.51569 -24.62956 -24.39234 -22.94321 -22.40710 -21.57735 -20.69279 -19.16347 -18.58647 -17.67772 -17.40903 -16.74186 -16.40649 -16.07147 -15.49726 -15.42752 -15.21848 -14.89182 -14.62642 -14.13635 -14.12474 -14.01008 -13.84196 -13.65183 -13.31550 -13.06927 -12.80369 -12.79265 -12.56002 -12.24354 -12.20041 -12.01428 -11.71147 -11.40193 -11.35125 -11.04314 -10.85440 -9.91383 -9.41730 -9.02074 -7.93030 -5.22475 -0.02193 1.34483 1.48628 1.50009 1.51449 1.57450 1.93926 2.10674 2.57286 3.36948 3.40264 3.76342 3.80448 3.89923 3.94332 4.05345 4.12564 4.30925 4.34025 4.53918 4.55845 4.56887 4.68845 4.75301 4.77541 4.80877 4.89387 4.92127 4.98060 5.04818 5.16213 5.25859 5.42650 5.48312 5.52305 5.57008 5.88091 6.22554 6.28169 6.86163 7.34224 8.09015 8.32775 9.30482 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023134 B = 0.004099 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.031007 B = 6829.384742 C = 7713.197490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.017 3.983 3 C -0.228 4.228 4 C -0.117 4.117 5 C -0.111 4.111 6 C 0.597 3.403 7 O -0.563 6.563 8 N -0.599 5.599 9 C 0.122 3.878 10 C -0.128 4.128 11 C 0.173 3.827 12 N -0.738 5.738 13 C -0.239 4.239 14 H 0.080 0.920 15 C -0.076 4.076 16 N -0.972 5.972 17 Si 0.972 3.028 18 H -0.277 1.277 19 H -0.299 1.299 20 H -0.277 1.277 21 C -0.138 4.138 22 C 0.109 3.891 23 O -0.164 6.164 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.115 0.885 27 H 0.185 0.815 28 H 0.162 0.838 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.370 0.630 35 H 0.250 0.750 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.087 0.913 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 17.449 -13.010 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 C -0.247 4.247 4 C -0.138 4.138 5 C -0.162 4.162 6 C 0.387 3.613 7 O -0.445 6.445 8 N -0.330 5.330 9 C 0.000 4.000 10 C -0.167 4.167 11 C 0.065 3.935 12 N -0.377 5.377 13 C -0.371 4.371 14 H 0.098 0.902 15 C -0.268 4.268 16 N -0.623 5.623 17 Si 0.801 3.199 18 H -0.203 1.203 19 H -0.225 1.225 20 H -0.203 1.203 21 C -0.178 4.178 22 C -0.013 4.013 23 O -0.061 6.061 24 H 0.122 0.878 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.202 0.798 28 H 0.180 0.820 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.202 0.798 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.106 0.894 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.548 17.187 -13.131 23.257 hybrid contribution 0.163 -0.768 0.950 1.232 sum -8.385 16.419 -12.181 22.097 Atomic orbital electron populations 1.20672 0.81646 1.05868 1.05385 1.23852 0.96082 0.84010 0.99553 1.21917 0.91047 1.01260 1.10479 1.22211 1.00034 0.92465 0.99107 1.21761 0.82130 0.94725 1.17539 1.16959 0.86302 0.81489 0.76556 1.90809 1.23947 1.76164 1.53573 1.48144 1.11799 1.05312 1.67704 1.21672 0.89544 0.90953 0.97866 1.22068 0.98337 0.98662 0.97662 1.20417 0.93229 0.90104 0.89757 1.42655 1.41550 1.30582 1.22933 1.19617 1.11022 1.02879 1.03558 0.90215 1.25565 1.01248 1.02695 0.97335 1.69826 1.38908 1.41734 1.11852 0.85226 0.78685 0.79403 0.76540 1.20288 1.22547 1.20255 1.22448 1.01152 0.97566 0.96681 1.22201 0.82876 0.98656 0.97611 1.84181 1.15726 1.35045 1.71166 0.87842 0.89761 0.86699 0.79793 0.82029 0.89145 0.88890 0.90207 0.93283 0.92806 0.79837 0.94142 0.91277 0.94102 0.89439 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.41 71.24 0.74 0.08 16 2 C 0.02 0.29 7.31 24.97 0.18 0.48 16 3 C -0.23 -3.92 10.77 22.07 0.24 -3.68 16 4 C -0.12 -2.73 10.63 22.39 0.24 -2.49 16 5 C -0.11 -3.02 6.76 24.07 0.16 -2.86 16 6 C 0.60 19.04 7.65 86.44 0.66 19.70 16 7 O -0.56 -20.73 16.30 -4.33 -0.07 -20.80 16 8 N -0.60 -17.83 2.98 -823.53 -2.45 -20.28 16 9 C 0.12 3.49 6.44 86.36 0.56 4.05 16 10 C -0.13 -4.32 5.55 30.67 0.17 -4.15 16 11 C 0.17 6.67 2.73 45.02 0.12 6.80 16 12 N -0.74 -36.97 5.12 -322.83 -1.65 -38.62 16 13 C -0.24 -13.01 9.93 84.03 0.83 -12.17 16 14 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 15 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 16 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 17 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C -0.14 -4.76 5.66 30.67 0.17 -4.59 16 22 C 0.11 2.99 6.09 86.35 0.53 3.52 16 23 O -0.16 -3.85 7.27 -5.05 -0.04 -3.89 16 24 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 28 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.09 2.65 7.00 -2.39 -0.02 2.63 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 34 H 0.37 20.30 7.80 -92.71 -0.72 19.58 16 35 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.11 2.79 4.28 -17.22 -0.07 2.71 16 Total: -1.00 -70.09 323.72 3.44 -66.64 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.27 Total: 28.02 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.07 Total: 0.79 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -3.82 Total: -118.32 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.11 Total: -24.69 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.09 3.44 -66.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989902398.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.330 kcal (2) G-P(sol) polarization free energy of solvation -70.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds