Wall clock time and date at job start Tue Mar 31 2020 00:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33661 * 125.80123 * 2 1 4 4 C 1.34219 * 110.90396 * 179.97438 * 3 2 1 5 5 C 1.34169 * 109.12654 * 0.22986 * 4 3 2 6 6 C 1.36416 * 125.80382 * 179.97438 * 2 1 3 7 7 C 1.47377 * 127.18660 * 0.05123 * 6 2 1 8 8 O 1.21610 * 120.00399 * 38.89241 * 7 6 2 9 9 N 1.34785 * 120.00030 * 218.88411 * 7 6 2 10 10 C 1.46930 * 120.62485 * 5.35034 * 9 7 6 11 11 C 1.53623 * 108.54119 * 126.37246 * 10 9 7 12 12 C 1.53037 * 109.24385 * 54.84861 * 11 10 9 13 13 N 1.46506 * 109.45861 * 178.48997 * 12 11 10 14 14 C 1.36931 * 120.00408 * 275.07003 * 13 12 11 15 15 H 1.08004 * 119.99458 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00409 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99595 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00093 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47489 * 90.00129 * 18 16 14 20 20 H 1.48506 * 109.47050 * 210.00123 * 18 16 14 21 21 H 1.48500 * 109.47158 * 329.99795 * 18 16 14 22 22 C 1.53039 * 109.53974 * 298.51447 * 12 11 10 23 23 C 1.46922 * 120.63174 * 185.63046 * 9 7 6 24 24 H 1.09002 * 109.47244 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47297 * 120.02128 * 1 2 3 26 26 H 1.09005 * 109.47007 * 240.02331 * 1 2 3 27 27 H 1.08003 * 125.43130 * 179.97438 * 4 3 2 28 28 H 1.08002 * 127.01939 * 179.73171 * 5 4 3 29 29 H 1.09006 * 109.58454 * 246.19844 * 10 9 7 30 30 H 1.08995 * 109.59036 * 6.62158 * 10 9 7 31 31 H 1.09004 * 109.63149 * 294.86268 * 11 10 9 32 32 H 1.08995 * 109.43042 * 174.72413 * 11 10 9 33 33 H 1.08997 * 109.46219 * 58.53596 * 12 11 10 34 34 H 0.97000 * 119.99346 * 95.07469 * 13 12 11 35 35 H 0.97003 * 119.99460 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.49707 * 301.40846 * 22 12 11 37 37 H 1.09002 * 109.52226 * 181.33306 * 22 12 11 38 38 H 1.09000 * 109.58980 * 353.37369 * 23 9 7 39 39 H 1.08999 * 109.58744 * 113.65499 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5859 0.7390 0.0006 5 6 3.6849 -0.5990 -0.0041 6 6 2.3050 -1.1064 0.0005 7 6 1.8739 -2.5157 0.0001 8 8 0.9126 -2.8574 -0.6619 9 7 2.5451 -3.4260 0.7332 10 6 3.6341 -3.0107 1.6279 11 6 3.3471 -3.5588 3.0340 12 6 3.1435 -5.0734 2.9531 13 7 2.9050 -5.6063 4.2968 14 6 3.9636 -5.9224 5.1058 15 1 4.9744 -5.7794 4.7531 16 6 3.7377 -6.4268 6.3792 17 7 2.5059 -6.6007 6.8091 18 14 5.1818 -6.8574 7.4830 19 1 5.5593 -5.6697 8.2903 20 1 4.7980 -7.9699 8.3887 21 1 6.3362 -7.2753 6.6474 22 6 1.9383 -5.3809 2.0614 23 6 2.2057 -4.8529 0.6484 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5141 -0.8897 26 1 -0.3633 -0.5135 0.8902 27 1 4.4172 1.4285 0.0003 28 1 4.5928 -1.1839 -0.0090 29 1 4.5799 -3.4112 1.2626 30 1 3.6846 -1.9224 1.6615 31 1 2.4465 -3.0915 3.4324 32 1 4.1911 -3.3395 3.6879 33 1 4.0350 -5.5377 2.5315 34 1 1.9972 -5.7351 4.6133 35 1 2.3480 -6.9535 7.6988 36 1 1.0511 -4.8965 2.4690 37 1 1.7791 -6.4586 2.0230 38 1 1.3133 -4.9806 0.0357 39 1 3.0363 -5.4002 0.2026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989915414.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:57 Heat of formation + Delta-G solvation = -9.261597 kcal Electronic energy + Delta-G solvation = -21767.521886 eV Core-core repulsion = 18484.076021 eV Total energy + Delta-G solvation = -3283.445866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.70837 -39.76455 -37.28195 -34.50759 -33.31176 -32.17375 -31.81235 -30.66833 -29.25321 -27.11007 -25.08013 -23.42005 -23.08683 -22.05482 -21.17112 -19.94353 -18.75043 -17.57688 -17.03907 -16.56335 -16.14432 -15.70700 -14.92159 -14.79746 -14.35298 -13.77066 -13.69260 -13.53869 -13.34313 -13.19243 -13.09395 -13.07127 -12.82187 -12.31879 -12.00418 -11.78802 -11.52127 -10.96926 -10.89689 -10.81026 -10.48043 -10.24523 -9.99520 -9.84115 -9.70951 -9.61989 -8.91225 -8.72942 -8.42980 -6.98710 -5.78779 -3.07968 1.36248 1.95204 2.66939 3.01186 3.29056 3.41386 3.46549 3.48413 4.36958 4.55957 4.60137 4.79672 5.03016 5.16354 5.30587 5.34890 5.36495 5.40092 5.42521 5.51843 5.54353 5.61914 5.69146 5.72737 5.95438 5.97133 6.03721 6.13733 6.23935 6.39376 6.40571 6.52062 6.64697 6.88384 6.91544 7.04494 7.54861 7.66942 8.26815 8.39540 9.50702 10.08429 10.43250 11.43850 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.003951 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.546442 B = 7085.167659 C = 7506.343221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.064 3.936 3 O -0.177 6.177 4 C -0.041 4.041 5 C -0.185 4.185 6 C -0.235 4.235 7 C 0.590 3.410 8 O -0.549 6.549 9 N -0.597 5.597 10 C 0.102 3.898 11 C -0.149 4.149 12 C 0.179 3.821 13 N -0.724 5.724 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.138 4.138 23 C 0.117 3.883 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.207 0.793 28 H 0.158 0.842 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 13.645 -14.840 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.011 3.989 3 O -0.074 6.074 4 C -0.107 4.107 5 C -0.204 4.204 6 C -0.239 4.239 7 C 0.379 3.621 8 O -0.428 6.428 9 N -0.329 5.329 10 C -0.021 4.021 11 C -0.190 4.190 12 C 0.068 3.932 13 N -0.365 5.365 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.177 4.177 23 C -0.006 4.006 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.224 0.776 28 H 0.176 0.824 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.309 13.665 -15.080 20.353 hybrid contribution 0.925 -0.405 0.982 1.408 sum 1.234 13.260 -14.098 19.393 Atomic orbital electron populations 1.20466 0.84046 1.03857 1.05040 1.22678 0.93980 0.83094 0.99137 1.83755 1.17116 1.34883 1.71613 1.23840 0.83555 0.96336 1.06966 1.22902 0.96612 0.94334 1.06548 1.21126 0.93531 0.93948 1.15329 1.17274 0.81980 0.83837 0.79043 1.90746 1.27511 1.80667 1.43888 1.47986 1.35403 1.07327 1.42231 1.22167 0.88822 1.00511 0.90603 1.22739 1.02387 1.00004 0.93911 1.20175 0.95153 0.90988 0.86859 1.42439 1.06719 1.76078 1.11235 1.19234 0.87679 1.35280 0.94919 0.91183 1.24746 0.96303 1.02137 0.97710 1.69669 1.18100 1.51491 1.18808 0.86207 0.81666 0.77713 0.80701 1.21747 1.21782 1.20755 1.22195 0.99973 1.01396 0.94153 1.21634 1.01548 0.79297 0.98104 0.90356 0.88333 0.89139 0.77605 0.82421 0.91694 0.89584 0.92268 0.90739 0.93440 0.78268 0.93497 0.91820 0.90520 0.89286 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.77 36.00 0.35 -0.42 16 2 C 0.06 0.77 7.37 -34.97 -0.26 0.52 16 3 O -0.18 -1.96 10.52 7.62 0.08 -1.88 16 4 C -0.04 -0.37 12.03 29.30 0.35 -0.02 16 5 C -0.18 -1.96 8.72 -37.46 -0.33 -2.28 16 6 C -0.24 -3.14 5.35 -103.28 -0.55 -3.70 16 7 C 0.59 9.20 7.47 -12.54 -0.09 9.11 16 8 O -0.55 -9.83 15.89 5.27 0.08 -9.74 16 9 N -0.60 -8.84 2.97 -173.79 -0.52 -9.36 16 10 C 0.10 1.40 5.60 -3.48 -0.02 1.38 16 11 C -0.15 -2.56 5.67 -26.39 -0.15 -2.71 16 12 C 0.18 3.43 2.73 -67.89 -0.19 3.25 16 13 N -0.72 -17.85 5.12 -53.39 -0.27 -18.12 16 14 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 15 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 18 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.14 -2.32 5.55 -26.61 -0.15 -2.46 16 23 C 0.12 1.72 6.44 -3.71 -0.02 1.69 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.10 1.01 8.01 -51.93 -0.42 0.59 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.21 1.00 8.06 -52.48 -0.42 0.57 16 28 H 0.16 1.40 7.47 -52.49 -0.39 1.00 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.08 4.71 -51.93 -0.24 0.83 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.38 10.17 7.80 -40.82 -0.32 9.86 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 322.95 15.07 4.87 4.87 Total: -1.00 -32.57 322.95 -6.86 -39.43 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.50 Total: 7.80 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.30 Total: -2.78 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.06 Total: -54.74 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.16 Total: -11.63 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.57 -6.86 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989915414.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.167 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds