Wall clock time and date at job start Tue Mar 31 2020 00:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33661 * 125.80123 * 2 1 4 4 C 1.34219 * 110.90396 * 179.97438 * 3 2 1 5 5 C 1.34169 * 109.12654 * 0.22986 * 4 3 2 6 6 C 1.36416 * 125.80382 * 179.97438 * 2 1 3 7 7 C 1.47377 * 127.18660 * 0.05123 * 6 2 1 8 8 O 1.21610 * 120.00399 * 38.89241 * 7 6 2 9 9 N 1.34785 * 120.00030 * 218.88411 * 7 6 2 10 10 C 1.46930 * 120.62485 * 5.35034 * 9 7 6 11 11 C 1.53623 * 108.54119 * 126.37246 * 10 9 7 12 12 C 1.53037 * 109.24385 * 54.84861 * 11 10 9 13 13 N 1.46506 * 109.45861 * 178.48997 * 12 11 10 14 14 C 1.36931 * 120.00408 * 275.07003 * 13 12 11 15 15 H 1.08004 * 119.99458 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00409 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99595 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00093 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47489 * 90.00129 * 18 16 14 20 20 H 1.48506 * 109.47050 * 210.00123 * 18 16 14 21 21 H 1.48500 * 109.47158 * 329.99795 * 18 16 14 22 22 C 1.53039 * 109.53974 * 298.51447 * 12 11 10 23 23 C 1.46922 * 120.63174 * 185.63046 * 9 7 6 24 24 H 1.09002 * 109.47244 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47297 * 120.02128 * 1 2 3 26 26 H 1.09005 * 109.47007 * 240.02331 * 1 2 3 27 27 H 1.08003 * 125.43130 * 179.97438 * 4 3 2 28 28 H 1.08002 * 127.01939 * 179.73171 * 5 4 3 29 29 H 1.09006 * 109.58454 * 246.19844 * 10 9 7 30 30 H 1.08995 * 109.59036 * 6.62158 * 10 9 7 31 31 H 1.09004 * 109.63149 * 294.86268 * 11 10 9 32 32 H 1.08995 * 109.43042 * 174.72413 * 11 10 9 33 33 H 1.08997 * 109.46219 * 58.53596 * 12 11 10 34 34 H 0.97000 * 119.99346 * 95.07469 * 13 12 11 35 35 H 0.97003 * 119.99460 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.49707 * 301.40846 * 22 12 11 37 37 H 1.09002 * 109.52226 * 181.33306 * 22 12 11 38 38 H 1.09000 * 109.58980 * 353.37369 * 23 9 7 39 39 H 1.08999 * 109.58744 * 113.65499 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5859 0.7390 0.0006 5 6 3.6849 -0.5990 -0.0041 6 6 2.3050 -1.1064 0.0005 7 6 1.8739 -2.5157 0.0001 8 8 0.9126 -2.8574 -0.6619 9 7 2.5451 -3.4260 0.7332 10 6 3.6341 -3.0107 1.6279 11 6 3.3471 -3.5588 3.0340 12 6 3.1435 -5.0734 2.9531 13 7 2.9050 -5.6063 4.2968 14 6 3.9636 -5.9224 5.1058 15 1 4.9744 -5.7794 4.7531 16 6 3.7377 -6.4268 6.3792 17 7 2.5059 -6.6007 6.8091 18 14 5.1818 -6.8574 7.4830 19 1 5.5593 -5.6697 8.2903 20 1 4.7980 -7.9699 8.3887 21 1 6.3362 -7.2753 6.6474 22 6 1.9383 -5.3809 2.0614 23 6 2.2057 -4.8529 0.6484 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3633 -0.5141 -0.8897 26 1 -0.3633 -0.5135 0.8902 27 1 4.4172 1.4285 0.0003 28 1 4.5928 -1.1839 -0.0090 29 1 4.5799 -3.4112 1.2626 30 1 3.6846 -1.9224 1.6615 31 1 2.4465 -3.0915 3.4324 32 1 4.1911 -3.3395 3.6879 33 1 4.0350 -5.5377 2.5315 34 1 1.9972 -5.7351 4.6133 35 1 2.3480 -6.9535 7.6988 36 1 1.0511 -4.8965 2.4690 37 1 1.7791 -6.4586 2.0230 38 1 1.3133 -4.9806 0.0357 39 1 3.0363 -5.4002 0.2026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989915414.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:56 Heat of formation + Delta-G solvation = -30.363056 kcal Electronic energy + Delta-G solvation = -21768.436914 eV Core-core repulsion = 18484.076021 eV Total energy + Delta-G solvation = -3284.360894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.53848 -40.98860 -38.68632 -36.16451 -34.37647 -33.63505 -32.83665 -31.92427 -30.99599 -28.03031 -26.60996 -24.91728 -24.39576 -23.27987 -22.18514 -21.27945 -19.81485 -19.09778 -18.53975 -17.56053 -17.14954 -16.76828 -16.61357 -16.11969 -15.47409 -15.39562 -15.29989 -14.85236 -14.66706 -14.27671 -14.05176 -13.91244 -13.82022 -13.67705 -13.30674 -13.07499 -12.83090 -12.68604 -12.61663 -12.23760 -12.15086 -12.01932 -11.70300 -11.32742 -11.14307 -10.93713 -10.58069 -9.74624 -9.47560 -9.00641 -7.92762 -5.21812 0.42657 1.16005 1.48930 1.50246 1.58612 1.78688 1.97063 2.20498 2.57562 3.40464 3.51817 3.66146 3.81445 3.91533 4.00341 4.08601 4.16159 4.31400 4.35947 4.38904 4.56823 4.59436 4.64199 4.73160 4.80057 4.81927 4.83828 4.86861 5.01553 5.06066 5.18782 5.28916 5.40335 5.48592 5.53854 5.61070 6.07092 6.28658 6.37913 7.08489 7.34712 8.10080 8.33461 9.31074 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.003951 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.546442 B = 7085.167659 C = 7506.343221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 O -0.181 6.181 4 C -0.025 4.025 5 C -0.199 4.199 6 C -0.265 4.265 7 C 0.587 3.413 8 O -0.580 6.580 9 N -0.599 5.599 10 C 0.113 3.887 11 C -0.139 4.139 12 C 0.173 3.827 13 N -0.739 5.739 14 C -0.236 4.236 15 H 0.080 0.920 16 C -0.078 4.078 17 N -0.973 5.973 18 Si 0.972 3.028 19 H -0.288 1.288 20 H -0.299 1.299 21 H -0.267 1.267 22 C -0.127 4.127 23 C 0.123 3.877 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.251 0.749 28 H 0.176 0.824 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.370 0.630 35 H 0.249 0.751 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.900 15.162 -15.944 22.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.002 3.998 3 O -0.077 6.077 4 C -0.090 4.090 5 C -0.218 4.218 6 C -0.269 4.269 7 C 0.377 3.623 8 O -0.462 6.462 9 N -0.331 5.331 10 C -0.009 4.009 11 C -0.180 4.180 12 C 0.065 3.935 13 N -0.378 5.378 14 C -0.368 4.368 15 H 0.098 0.902 16 C -0.270 4.270 17 N -0.624 5.624 18 Si 0.801 3.199 19 H -0.215 1.215 20 H -0.226 1.226 21 H -0.191 1.191 22 C -0.166 4.166 23 C 0.000 4.000 24 H 0.121 0.879 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.267 0.733 28 H 0.193 0.807 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.507 15.210 -16.228 22.383 hybrid contribution 0.247 -0.819 1.248 1.513 sum 2.753 14.391 -14.980 20.954 Atomic orbital electron populations 1.20494 0.83274 1.05274 1.04359 1.22964 0.94795 0.83216 0.98790 1.83785 1.18053 1.34471 1.71378 1.24706 0.83491 0.96691 1.04153 1.23128 0.95855 0.95172 1.07622 1.21180 0.95563 0.92889 1.17258 1.17640 0.81364 0.84798 0.78473 1.90720 1.28860 1.81371 1.45259 1.48048 1.35574 1.07219 1.42210 1.22159 0.89259 1.01550 0.87983 1.22524 1.01130 0.98114 0.96212 1.20422 0.96232 0.92087 0.84753 1.42677 1.05531 1.76577 1.13013 1.19652 0.88647 1.33383 0.95087 0.90178 1.25558 0.98670 1.03272 0.99455 1.69837 1.20243 1.53424 1.18900 0.85160 0.79044 0.76978 0.78718 1.21520 1.22621 1.19126 1.22051 0.98234 1.01301 0.95026 1.21570 1.02378 0.79695 0.96341 0.87915 0.89027 0.89745 0.73318 0.80667 0.89243 0.87864 0.94244 0.91490 0.92927 0.79912 0.94190 0.93441 0.90656 0.89641 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.77 71.23 0.70 -0.80 16 2 C 0.06 1.27 7.37 25.26 0.19 1.45 16 3 O -0.18 -3.54 10.52 4.35 0.05 -3.49 16 4 C -0.03 -0.37 12.03 66.89 0.80 0.44 16 5 C -0.20 -3.62 8.72 23.65 0.21 -3.41 16 6 C -0.26 -6.69 5.35 -18.99 -0.10 -6.79 16 7 C 0.59 17.87 7.47 86.65 0.65 18.51 16 8 O -0.58 -20.86 15.89 -4.06 -0.06 -20.92 16 9 N -0.60 -16.92 2.97 -821.99 -2.44 -19.36 16 10 C 0.11 2.84 5.60 86.51 0.48 3.32 16 11 C -0.14 -4.64 5.67 30.82 0.17 -4.47 16 12 C 0.17 6.57 2.73 45.02 0.12 6.69 16 13 N -0.74 -36.76 5.12 -322.81 -1.65 -38.41 16 14 C -0.24 -12.77 9.93 84.03 0.83 -11.93 16 15 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 16 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 17 N -0.97 -59.65 13.06 21.65 0.28 -59.37 16 18 Si 0.97 45.45 29.55 68.60 2.03 47.47 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C -0.13 -4.25 5.55 30.67 0.17 -4.08 16 23 C 0.12 3.48 6.44 86.36 0.56 4.03 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.09 1.88 8.01 -2.39 -0.02 1.86 16 26 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.25 1.12 8.06 -2.91 -0.02 1.10 16 28 H 0.18 2.44 7.47 -2.91 -0.02 2.42 16 29 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.10 2.31 4.71 -2.39 -0.01 2.30 16 31 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 34 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 35 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.09 2.53 7.00 -2.39 -0.02 2.51 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.08 322.95 3.79 -67.30 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.34 Total: 27.75 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.25 Total: -0.97 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -3.81 Total: -117.14 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.02 Total: -24.41 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -71.08 3.79 -67.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989915414.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.932 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds