Wall clock time and date at job start Tue Mar 31 2020 01:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40365 * 126.64683 * 2 1 4 4 C 1.35130 * 107.11313 * 179.73522 * 3 2 1 5 5 O 1.33929 * 108.77023 * 0.22773 * 4 3 2 6 6 C 1.34911 * 109.38510 * 359.97438 * 5 4 3 7 7 C 1.46657 * 125.99070 * 180.02562 * 6 5 4 8 8 O 1.21696 * 120.00122 * 186.99470 * 7 6 5 9 9 N 1.34776 * 119.99738 * 6.99759 * 7 6 5 10 10 C 1.46918 * 120.62967 * 186.14822 * 9 7 6 11 11 C 1.53624 * 108.54509 * 126.36667 * 10 9 7 12 12 C 1.53039 * 109.24302 * 54.85550 * 11 10 9 13 13 N 1.46497 * 109.46106 * 178.49215 * 12 11 10 14 14 C 1.36940 * 119.99919 * 275.06564 * 13 12 11 15 15 H 1.07998 * 120.00017 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99706 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00013 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00341 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47575 * 89.99862 * 18 16 14 20 20 H 1.48501 * 109.47223 * 210.00159 * 18 16 14 21 21 H 1.48500 * 109.46933 * 329.99756 * 18 16 14 22 22 C 1.53046 * 109.53732 * 298.51261 * 12 11 10 23 23 C 1.46929 * 120.62929 * 6.42317 * 9 7 6 24 24 H 1.08998 * 109.47053 * 90.02185 * 1 2 3 25 25 H 1.08997 * 109.46882 * 210.02695 * 1 2 3 26 26 H 1.09002 * 109.46737 * 330.02410 * 1 2 3 27 27 H 1.08007 * 126.44051 * 359.97438 * 3 2 1 28 28 H 1.08006 * 125.60905 * 180.24190 * 4 3 2 29 29 H 1.08999 * 109.59093 * 246.19980 * 10 9 7 30 30 H 1.08996 * 109.58809 * 6.62472 * 10 9 7 31 31 H 1.08998 * 109.63146 * 294.86123 * 11 10 9 32 32 H 1.09003 * 109.43442 * 174.72474 * 11 10 9 33 33 H 1.08999 * 109.44593 * 58.52572 * 12 11 10 34 34 H 0.97000 * 120.00445 * 95.06854 * 13 12 11 35 35 H 0.96998 * 120.00209 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.49343 * 301.41441 * 22 12 11 37 37 H 1.08997 * 109.49354 * 181.31605 * 22 12 11 38 38 H 1.08997 * 109.58870 * 353.37525 * 23 9 7 39 39 H 1.09002 * 109.58352 * 113.66018 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 0.0060 5 8 3.6005 -0.6648 0.0046 6 6 2.3221 -1.0956 -0.0017 7 6 1.8843 -2.4953 -0.0046 8 8 0.7049 -2.7637 -0.1387 9 7 2.7882 -3.4843 0.1413 10 6 2.3867 -4.8912 0.0066 11 6 3.2990 -5.5624 -1.0312 12 6 4.7602 -5.3626 -0.6226 13 7 5.6334 -6.0318 -1.5900 14 6 5.9127 -7.3653 -1.4522 15 1 5.4897 -7.9235 -0.6302 16 6 6.7406 -7.9992 -2.3686 17 7 7.0087 -9.2811 -2.2365 18 14 7.4741 -7.0332 -3.7892 19 1 8.7818 -6.4630 -3.3772 20 1 7.6718 -7.9357 -4.9518 21 1 6.5516 -5.9328 -4.1681 22 6 5.0835 -3.8669 -0.5933 23 6 4.1925 -3.1763 0.4440 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 2.0306 2.1595 -0.0004 28 1 4.5046 1.2917 0.0113 29 1 2.4902 -5.3944 0.9679 30 1 1.3503 -4.9451 -0.3266 31 1 3.1306 -5.1149 -2.0107 32 1 3.0759 -6.6285 -1.0746 33 1 4.9216 -5.7885 0.3676 34 1 6.0138 -5.5303 -2.3281 35 1 7.5869 -9.7241 -2.8770 36 1 4.8983 -3.4354 -1.5769 37 1 6.1305 -3.7263 -0.3249 38 1 4.3480 -2.0984 0.3995 39 1 4.4396 -3.5402 1.4413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989949934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:45 Heat of formation + Delta-G solvation = 3.508140 kcal Electronic energy + Delta-G solvation = -21896.018011 eV Core-core repulsion = 18613.125883 eV Total energy + Delta-G solvation = -3282.892128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.96338 -39.83002 -37.57054 -34.89838 -34.10774 -32.11469 -31.32874 -30.30559 -29.78085 -27.75959 -25.12674 -23.48775 -22.81527 -21.95532 -21.40025 -20.05909 -19.32365 -17.86499 -17.27003 -16.71115 -16.41992 -15.84639 -14.92868 -14.84318 -14.33313 -14.15392 -13.73384 -13.51182 -13.36898 -13.27865 -13.22635 -12.90177 -12.77239 -12.43644 -11.97329 -11.89983 -11.75053 -11.03414 -11.02722 -10.88356 -10.52975 -10.30511 -10.12161 -9.93186 -9.81746 -9.60735 -8.95596 -8.90905 -8.50800 -7.30462 -5.79573 -3.15543 0.91253 2.14017 2.46850 3.05485 3.12722 3.35685 3.38733 3.43728 4.34885 4.55356 4.56828 4.63582 5.00120 5.03914 5.23460 5.28170 5.31283 5.37785 5.39044 5.52133 5.55491 5.62872 5.71428 5.80242 5.81437 5.92451 6.06663 6.10488 6.13805 6.23386 6.24571 6.42546 6.48495 6.72018 6.81636 6.93031 7.36453 7.96127 8.02527 8.39514 9.17608 9.90324 10.10018 11.38688 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029885 B = 0.004136 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.696517 B = 6768.052915 C = 7278.929911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.091 4.091 3 C -0.225 4.225 4 C -0.015 4.015 5 O -0.154 6.154 6 C -0.079 4.079 7 C 0.599 3.401 8 O -0.526 6.526 9 N -0.597 5.597 10 C 0.114 3.886 11 C -0.150 4.150 12 C 0.182 3.818 13 N -0.748 5.748 14 C -0.244 4.244 15 H 0.091 0.909 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.141 4.141 23 C 0.095 3.905 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.154 0.846 28 H 0.208 0.792 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 21.734 6.379 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.244 4.244 4 C -0.084 4.084 5 O -0.050 6.050 6 C -0.130 4.130 7 C 0.387 3.613 8 O -0.406 6.406 9 N -0.329 5.329 10 C -0.008 4.008 11 C -0.191 4.191 12 C 0.073 3.927 13 N -0.390 5.390 14 C -0.374 4.374 15 H 0.109 0.891 16 C -0.191 4.191 17 N -0.581 5.581 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.180 4.180 23 C -0.027 4.027 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.171 0.829 28 H 0.224 0.776 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.905 21.079 6.388 23.758 hybrid contribution 0.749 0.818 -1.179 1.619 sum -8.156 21.897 5.209 23.941 Atomic orbital electron populations 1.20383 0.88298 1.03252 1.02902 1.20631 0.97604 0.91024 1.00128 1.21712 0.92464 1.00008 1.10197 1.24521 0.99907 0.81642 1.02360 1.84246 1.28030 1.21813 1.70933 1.21961 0.81439 0.94830 1.14754 1.16689 0.85450 0.81835 0.77324 1.90823 1.15985 1.82109 1.51645 1.48083 1.09348 1.06767 1.68663 1.21880 1.00181 0.78699 1.00085 1.22722 0.97275 1.01257 0.97858 1.20168 0.88777 0.89790 0.93997 1.42795 1.57144 1.08663 1.30411 1.19074 1.24186 0.83987 1.10178 0.89138 1.24671 1.00032 0.95605 0.98756 1.69701 1.41318 1.08824 1.38269 0.86557 0.79379 0.79386 0.83236 1.21074 1.21743 1.20392 1.22223 0.99535 0.97214 0.98990 1.22302 0.79488 1.01971 0.98940 0.90779 0.89768 0.91631 0.82866 0.77579 0.91181 0.89330 0.92299 0.90008 0.92422 0.80664 0.93036 0.91873 0.90329 0.87669 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.74 36.01 0.35 -0.60 16 2 C -0.09 -1.05 6.20 -104.43 -0.65 -1.70 16 3 C -0.22 -2.01 10.83 -39.89 -0.43 -2.44 16 4 C -0.02 -0.13 12.08 29.63 0.36 0.23 16 5 O -0.15 -1.73 7.14 5.01 0.04 -1.70 16 6 C -0.08 -1.03 6.83 -36.79 -0.25 -1.28 16 7 C 0.60 9.07 7.65 -12.86 -0.10 8.97 16 8 O -0.53 -8.99 14.29 5.19 0.07 -8.91 16 9 N -0.60 -8.61 2.97 -174.06 -0.52 -9.13 16 10 C 0.11 1.68 6.44 -3.49 -0.02 1.66 16 11 C -0.15 -2.59 5.67 -26.39 -0.15 -2.74 16 12 C 0.18 3.36 2.73 -67.89 -0.19 3.17 16 13 N -0.75 -17.28 4.93 -53.39 -0.26 -17.54 16 14 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 15 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 16 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 17 N -0.93 -29.09 13.97 55.49 0.78 -28.31 16 18 Si 0.88 21.97 27.74 -169.99 -4.71 17.25 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 22 C -0.14 -2.10 5.55 -26.61 -0.15 -2.25 16 23 C 0.10 1.22 6.32 -3.71 -0.02 1.20 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.00 6.63 -51.93 -0.34 0.66 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.21 0.83 8.06 -52.48 -0.42 0.41 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.34 7.04 -51.93 -0.37 0.97 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.36 8.27 5.66 -40.82 -0.23 8.04 16 35 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.11 1.24 3.80 -54.99 -0.21 1.04 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -32.87 316.54 -6.73 -39.59 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.39 Total: 6.61 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.00 Total: -54.98 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.11 Total: -10.61 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.25 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.87 -6.73 -39.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989949934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.103 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds