Wall clock time and date at job start Tue Mar 31 2020 01:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40365 * 126.64683 * 2 1 4 4 C 1.35130 * 107.11313 * 179.73522 * 3 2 1 5 5 O 1.33929 * 108.77023 * 0.22773 * 4 3 2 6 6 C 1.34911 * 109.38510 * 359.97438 * 5 4 3 7 7 C 1.46657 * 125.99070 * 180.02562 * 6 5 4 8 8 O 1.21696 * 120.00122 * 186.99470 * 7 6 5 9 9 N 1.34776 * 119.99738 * 6.99759 * 7 6 5 10 10 C 1.46918 * 120.62967 * 186.14822 * 9 7 6 11 11 C 1.53624 * 108.54509 * 126.36667 * 10 9 7 12 12 C 1.53039 * 109.24302 * 54.85550 * 11 10 9 13 13 N 1.46497 * 109.46106 * 178.49215 * 12 11 10 14 14 C 1.36940 * 119.99919 * 275.06564 * 13 12 11 15 15 H 1.07998 * 120.00017 * 359.97438 * 14 13 12 16 16 C 1.38809 * 119.99706 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00013 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00341 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47575 * 89.99862 * 18 16 14 20 20 H 1.48501 * 109.47223 * 210.00159 * 18 16 14 21 21 H 1.48500 * 109.46933 * 329.99756 * 18 16 14 22 22 C 1.53046 * 109.53732 * 298.51261 * 12 11 10 23 23 C 1.46929 * 120.62929 * 6.42317 * 9 7 6 24 24 H 1.08998 * 109.47053 * 90.02185 * 1 2 3 25 25 H 1.08997 * 109.46882 * 210.02695 * 1 2 3 26 26 H 1.09002 * 109.46737 * 330.02410 * 1 2 3 27 27 H 1.08007 * 126.44051 * 359.97438 * 3 2 1 28 28 H 1.08006 * 125.60905 * 180.24190 * 4 3 2 29 29 H 1.08999 * 109.59093 * 246.19980 * 10 9 7 30 30 H 1.08996 * 109.58809 * 6.62472 * 10 9 7 31 31 H 1.08998 * 109.63146 * 294.86123 * 11 10 9 32 32 H 1.09003 * 109.43442 * 174.72474 * 11 10 9 33 33 H 1.08999 * 109.44593 * 58.52572 * 12 11 10 34 34 H 0.97000 * 120.00445 * 95.06854 * 13 12 11 35 35 H 0.96998 * 120.00209 * 179.97438 * 17 16 14 36 36 H 1.08999 * 109.49343 * 301.41441 * 22 12 11 37 37 H 1.08997 * 109.49354 * 181.31605 * 22 12 11 38 38 H 1.08997 * 109.58870 * 353.37525 * 23 9 7 39 39 H 1.09002 * 109.58352 * 113.66018 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 0.0060 5 8 3.6005 -0.6648 0.0046 6 6 2.3221 -1.0956 -0.0017 7 6 1.8843 -2.4953 -0.0046 8 8 0.7049 -2.7637 -0.1387 9 7 2.7882 -3.4843 0.1413 10 6 2.3867 -4.8912 0.0066 11 6 3.2990 -5.5624 -1.0312 12 6 4.7602 -5.3626 -0.6226 13 7 5.6334 -6.0318 -1.5900 14 6 5.9127 -7.3653 -1.4522 15 1 5.4897 -7.9235 -0.6302 16 6 6.7406 -7.9992 -2.3686 17 7 7.0087 -9.2811 -2.2365 18 14 7.4741 -7.0332 -3.7892 19 1 8.7818 -6.4630 -3.3772 20 1 7.6718 -7.9357 -4.9518 21 1 6.5516 -5.9328 -4.1681 22 6 5.0835 -3.8669 -0.5933 23 6 4.1925 -3.1763 0.4440 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 2.0306 2.1595 -0.0004 28 1 4.5046 1.2917 0.0113 29 1 2.4902 -5.3944 0.9679 30 1 1.3503 -4.9451 -0.3266 31 1 3.1306 -5.1149 -2.0107 32 1 3.0759 -6.6285 -1.0746 33 1 4.9216 -5.7885 0.3676 34 1 6.0138 -5.5303 -2.3281 35 1 7.5869 -9.7241 -2.8770 36 1 4.8983 -3.4354 -1.5769 37 1 6.1305 -3.7263 -0.3249 38 1 4.3480 -2.0984 0.3995 39 1 4.4396 -3.5402 1.4413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989949934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:44 Heat of formation + Delta-G solvation = -18.421597 kcal Electronic energy + Delta-G solvation = -21896.968956 eV Core-core repulsion = 18613.125883 eV Total energy + Delta-G solvation = -3283.843073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -43.74781 -40.98779 -38.89198 -36.41503 -35.05443 -33.94649 -32.50886 -31.69098 -30.97920 -28.69229 -26.61575 -24.80170 -24.15591 -23.13332 -22.42277 -21.29644 -20.46159 -19.59580 -18.50280 -17.64915 -17.33258 -16.87976 -16.68327 -16.03031 -15.89647 -15.38363 -15.02062 -14.80642 -14.55843 -14.43558 -14.21537 -14.18493 -13.98455 -13.59643 -13.27061 -13.10218 -12.93193 -12.75862 -12.62828 -12.21722 -12.12538 -11.93807 -11.78856 -11.44212 -11.11094 -10.95088 -10.64466 -9.93685 -9.48082 -9.32104 -8.02104 -5.35726 0.03432 1.37666 1.40666 1.43408 1.47838 1.59094 2.02633 2.13411 2.48450 3.28660 3.44276 3.52186 3.79213 3.88506 3.95191 4.08732 4.10263 4.28661 4.33744 4.50041 4.52487 4.64314 4.66735 4.73847 4.75888 4.78593 4.90843 4.96866 5.04829 5.14428 5.20417 5.29290 5.42814 5.46378 5.58101 5.77600 5.92347 6.22033 6.29224 6.92012 7.07786 7.83749 8.02753 9.19423 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029885 B = 0.004136 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.696517 B = 6768.052915 C = 7278.929911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.092 4.092 3 C -0.234 4.234 4 C 0.007 3.993 5 O -0.163 6.163 6 C -0.117 4.117 7 C 0.595 3.405 8 O -0.558 6.558 9 N -0.601 5.601 10 C 0.122 3.878 11 C -0.140 4.140 12 C 0.175 3.825 13 N -0.751 5.751 14 C -0.228 4.228 15 H 0.059 0.941 16 C -0.064 4.064 17 N -0.985 5.985 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.299 1.299 21 H -0.256 1.256 22 C -0.129 4.129 23 C 0.100 3.900 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.182 0.818 28 H 0.253 0.747 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.364 0.636 35 H 0.257 0.743 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.937 25.677 6.414 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.252 4.252 4 C -0.062 4.062 5 O -0.060 6.060 6 C -0.168 4.168 7 C 0.385 3.615 8 O -0.440 6.440 9 N -0.332 5.332 10 C 0.000 4.000 11 C -0.180 4.180 12 C 0.067 3.933 13 N -0.394 5.394 14 C -0.359 4.359 15 H 0.077 0.923 16 C -0.256 4.256 17 N -0.635 5.635 18 Si 0.782 3.218 19 H -0.201 1.201 20 H -0.226 1.226 21 H -0.181 1.181 22 C -0.168 4.168 23 C -0.021 4.021 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.200 0.800 28 H 0.269 0.731 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.197 0.803 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.291 25.079 6.451 27.190 hybrid contribution 0.487 -0.314 -1.100 1.243 sum -7.804 24.765 5.351 26.511 Atomic orbital electron populations 1.20398 0.88080 1.03447 1.02936 1.21011 0.98175 0.91773 0.98574 1.22067 0.92223 1.00595 1.10337 1.25479 1.01417 0.80455 0.98827 1.84143 1.27063 1.23501 1.71322 1.21582 0.82634 0.93993 1.18578 1.16996 0.85109 0.82856 0.76562 1.90794 1.17192 1.82903 1.53078 1.48128 1.10041 1.06269 1.68724 1.21692 0.99173 0.79398 0.99752 1.22517 0.97161 1.00118 0.98247 1.20413 0.88383 0.91985 0.92500 1.42817 1.57929 1.07123 1.31501 1.19038 1.22547 0.85744 1.08540 0.92310 1.25481 1.01383 0.96606 1.02085 1.69883 1.42953 1.10940 1.39752 0.85420 0.79023 0.78201 0.79167 1.20081 1.22573 1.18119 1.22100 1.00767 0.94175 0.99757 1.22382 0.77995 1.02997 0.98757 0.90772 0.91932 0.89042 0.80041 0.73086 0.89899 0.89809 0.93235 0.92183 0.93003 0.80265 0.93405 0.92104 0.89113 0.85846 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.74 71.24 0.69 -1.10 16 2 C -0.09 -1.94 6.20 -19.74 -0.12 -2.06 16 3 C -0.23 -3.24 10.83 22.07 0.24 -3.00 16 4 C 0.01 0.08 12.08 67.10 0.81 0.89 16 5 O -0.16 -3.16 7.14 -5.00 -0.04 -3.20 16 6 C -0.12 -2.89 6.83 24.08 0.16 -2.72 16 7 C 0.59 17.72 7.65 86.44 0.66 18.38 16 8 O -0.56 -19.36 14.29 -4.33 -0.06 -19.42 16 9 N -0.60 -16.78 2.97 -822.81 -2.44 -19.22 16 10 C 0.12 3.62 6.44 86.51 0.56 4.18 16 11 C -0.14 -4.87 5.67 30.82 0.17 -4.69 16 12 C 0.18 6.35 2.73 45.02 0.12 6.48 16 13 N -0.75 -34.31 4.93 -322.81 -1.59 -35.90 16 14 C -0.23 -12.79 10.41 84.03 0.87 -11.92 16 15 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 16 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 17 N -0.98 -63.08 13.97 21.65 0.30 -62.78 16 18 Si 0.95 45.39 27.74 68.60 1.90 47.29 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 21 H -0.26 -11.13 6.52 99.48 0.65 -10.49 16 22 C -0.13 -3.60 5.55 30.67 0.17 -3.43 16 23 C 0.10 2.35 6.32 86.36 0.55 2.90 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.50 6.63 -2.39 -0.02 1.48 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 28 H 0.25 0.45 8.06 -2.91 -0.02 0.43 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.08 2.58 7.04 -2.39 -0.02 2.56 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 34 H 0.36 16.07 5.66 -92.71 -0.52 15.55 16 35 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.12 2.55 3.80 -50.84 -0.19 2.36 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -73.54 316.54 3.73 -69.81 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.30 Total: 22.81 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.36 Total: 0.60 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -3.73 Total: -117.89 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.10 Total: -22.61 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Total: -73.54 3.73 -69.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989949934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.385 kcal (2) G-P(sol) polarization free energy of solvation -73.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds