Wall clock time and date at job start Tue Mar 31 2020 00:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34170 * 125.43467 * 2 1 4 4 C 1.47022 * 105.95310 * 179.97438 * 3 2 1 5 5 C 1.47377 * 127.19381 * 179.97438 * 4 3 2 6 6 O 1.21615 * 119.99797 * 330.00176 * 5 4 3 7 7 N 1.34773 * 120.00149 * 150.00251 * 5 4 3 8 8 C 1.46924 * 120.63337 * 173.83104 * 7 5 4 9 9 C 1.53196 * 108.89227 * 126.29839 * 8 7 5 10 10 C 1.53353 * 109.14555 * 54.58141 * 9 8 7 11 11 N 1.46499 * 109.41758 * 178.67226 * 10 9 8 12 12 C 1.36933 * 120.00481 * 275.12747 * 11 10 9 13 13 H 1.07998 * 119.99716 * 0.02562 * 12 11 10 14 14 C 1.38810 * 120.00353 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99784 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00236 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47447 * 90.00034 * 16 14 12 18 18 H 1.48500 * 109.47253 * 210.00478 * 16 14 12 19 19 H 1.48500 * 109.46942 * 329.99997 * 16 14 12 20 20 C 1.53044 * 109.61014 * 298.71408 * 10 9 8 21 21 C 1.46924 * 120.62882 * 353.81800 * 7 5 4 22 22 C 1.36420 * 105.61500 * 0.23105 * 4 3 2 23 23 O 1.33655 * 108.39254 * 359.62929 * 22 4 3 24 24 H 1.09000 * 109.47039 * 90.00355 * 1 2 3 25 25 H 1.09007 * 109.47193 * 209.99682 * 1 2 3 26 26 H 1.08998 * 109.47346 * 329.99888 * 1 2 3 27 27 H 1.07997 * 127.02653 * 359.97438 * 3 2 1 28 28 H 1.08994 * 109.59233 * 246.15988 * 8 7 5 29 29 H 1.09006 * 109.58512 * 6.44603 * 8 7 5 30 30 H 1.08997 * 109.49971 * 174.66107 * 9 8 7 31 31 H 1.09003 * 109.49929 * 294.76467 * 9 8 7 32 32 H 1.09003 * 109.42175 * 58.75350 * 10 9 8 33 33 H 0.97005 * 119.99635 * 95.13244 * 11 10 9 34 34 H 0.97004 * 119.99833 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.49512 * 301.42092 * 20 10 9 36 36 H 1.08998 * 109.49476 * 181.32861 * 20 10 9 37 37 H 1.08993 * 109.58883 * 353.41072 * 21 7 5 38 38 H 1.08997 * 109.59000 * 113.70044 * 21 7 5 39 39 H 1.07999 * 125.80237 * 179.75654 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4125 0.0003 6 8 4.9095 2.5084 -0.5270 7 7 6.0207 0.9385 0.5844 8 6 7.2898 1.6710 0.4765 9 6 7.8486 1.9052 1.8836 10 6 7.9557 0.5603 2.6125 11 7 8.5193 0.7736 3.9478 12 6 9.8770 0.8280 4.1174 13 1 10.5323 0.7141 3.2666 14 6 10.4109 1.0307 5.3825 15 7 9.6122 1.1700 6.4193 16 14 12.2630 1.1056 5.6137 17 1 12.7240 2.5095 5.4659 18 1 12.6132 0.6097 6.9689 19 1 12.9243 0.2571 4.5899 20 6 6.5655 -0.0670 2.7400 21 6 5.9938 -0.3203 1.3415 22 6 3.5790 -0.7582 -0.0043 23 8 2.2852 -1.0935 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9595 2.1230 -0.0004 28 1 8.0011 1.0859 -0.1064 29 1 7.1178 2.6298 -0.0126 30 1 8.8349 2.3635 1.8117 31 1 7.1794 2.5654 2.4355 32 1 8.6051 -0.1079 2.0468 33 1 7.9306 0.8763 4.7120 34 1 9.9853 1.3113 7.3035 35 1 5.9087 0.6118 3.2841 36 1 6.6406 -1.0113 3.2790 37 1 4.9664 -0.6744 1.4255 38 1 6.5974 -1.0686 0.8279 39 1 4.4103 -1.4476 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991679004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:01 Heat of formation + Delta-G solvation = -5.022395 kcal Electronic energy + Delta-G solvation = -21493.485346 eV Core-core repulsion = 18210.223306 eV Total energy + Delta-G solvation = -3283.262040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.77895 -39.82530 -37.28846 -34.55926 -33.31484 -32.64233 -31.79185 -30.64266 -29.25422 -26.94565 -25.35708 -23.75846 -22.84423 -22.09532 -21.08231 -20.12054 -19.01289 -17.44273 -16.89203 -16.73365 -16.33217 -15.79497 -14.97676 -14.81798 -14.34556 -13.76759 -13.66019 -13.63384 -13.45201 -13.33906 -13.19240 -13.03561 -12.90240 -12.40237 -12.06355 -11.94668 -11.48601 -10.95276 -10.91406 -10.81689 -10.43880 -10.26983 -10.03963 -9.93372 -9.74547 -9.65972 -8.92284 -8.72623 -8.50301 -6.99349 -5.79208 -3.08438 1.25036 1.89721 2.60698 2.96765 3.29216 3.41896 3.47096 3.48611 4.29694 4.49222 4.56662 4.69823 4.93512 4.99619 5.12526 5.18670 5.21414 5.36196 5.37088 5.41232 5.55969 5.57691 5.60902 5.73624 5.82009 5.87235 5.96254 6.14746 6.19651 6.27952 6.43592 6.54003 6.59876 6.81626 6.90649 7.03602 7.48511 7.67190 8.23648 8.39072 9.50325 10.07469 10.42120 11.43385 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.003495 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.839888 B = 8009.665462 C = 8373.470831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.165 4.165 4 C -0.222 4.222 5 C 0.585 3.415 6 O -0.542 6.542 7 N -0.601 5.601 8 C 0.114 3.886 9 C -0.150 4.150 10 C 0.179 3.821 11 N -0.724 5.724 12 C -0.240 4.240 13 H 0.071 0.929 14 C -0.013 4.013 15 N -0.933 5.933 16 Si 0.906 3.094 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.139 4.139 21 C 0.096 3.904 22 C 0.009 3.991 23 O -0.174 6.174 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.157 0.843 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 -5.563 -13.561 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.185 4.185 4 C -0.226 4.226 5 C 0.374 3.626 6 O -0.421 6.421 7 N -0.334 5.334 8 C -0.009 4.009 9 C -0.191 4.191 10 C 0.069 3.931 11 N -0.365 5.365 12 C -0.371 4.371 13 H 0.088 0.912 14 C -0.209 4.209 15 N -0.581 5.581 16 Si 0.738 3.262 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.178 4.178 21 C -0.027 4.027 22 C -0.060 4.060 23 O -0.070 6.070 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.175 0.825 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.141 -5.278 -13.821 21.895 hybrid contribution 1.123 0.311 0.581 1.302 sum -15.018 -4.967 -13.240 20.628 Atomic orbital electron populations 1.20326 0.84699 1.04264 1.03635 1.22302 0.94138 0.83682 1.06363 1.22475 0.89945 0.99684 1.06403 1.21496 0.94739 0.93477 1.12904 1.17324 0.81889 0.85121 0.78296 1.90762 1.84275 1.20537 1.46508 1.48009 1.09311 1.24418 1.51637 1.21729 0.83096 0.97194 0.98838 1.22725 1.01208 1.01365 0.93813 1.20233 0.91531 0.92992 0.88383 1.42429 1.04444 1.86633 1.02945 1.19231 0.83070 1.41655 0.93140 0.91152 1.24749 0.97714 1.02784 0.95684 1.69663 1.33370 1.56279 0.98765 0.86201 0.85369 0.77658 0.77020 1.21718 1.21789 1.20751 1.22195 0.98443 1.02165 0.94989 1.22183 1.02076 0.85523 0.92958 1.24695 0.84047 0.95492 1.01773 1.83732 1.16506 1.35467 1.71335 0.90002 0.90370 0.89186 0.82532 0.91624 0.89575 0.90608 0.92231 0.93370 0.78280 0.93492 0.91680 0.90360 0.89502 0.91008 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.40 36.01 0.37 -0.05 16 2 C -0.02 -0.16 7.28 -35.74 -0.26 -0.42 16 3 C -0.17 -1.97 11.01 -37.46 -0.41 -2.38 16 4 C -0.22 -2.90 5.71 -103.27 -0.59 -3.49 16 5 C 0.58 9.23 7.65 -12.54 -0.10 9.13 16 6 O -0.54 -10.40 16.50 5.26 0.09 -10.31 16 7 N -0.60 -8.69 2.97 -174.06 -0.52 -9.21 16 8 C 0.11 1.74 6.43 -3.71 -0.02 1.71 16 9 C -0.15 -2.69 5.69 -26.45 -0.15 -2.84 16 10 C 0.18 3.39 2.73 -67.73 -0.19 3.20 16 11 N -0.72 -17.73 5.12 -53.23 -0.27 -18.00 16 12 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 13 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 15 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 16 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 C -0.14 -2.15 5.55 -26.61 -0.15 -2.29 16 21 C 0.10 1.16 5.26 -3.71 -0.02 1.14 16 22 C 0.01 0.10 9.72 30.08 0.29 0.39 16 23 O -0.17 -1.82 10.52 7.66 0.08 -1.74 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 0.89 4.27 -51.93 -0.22 0.67 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.22 1.52 6.49 -52.49 -0.34 1.18 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -33.52 323.01 -6.95 -40.47 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.44 Total: 7.05 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.46 Total: -3.04 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.07 Total: -54.46 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.17 Total: -12.05 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.52 -6.95 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991679004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.450 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds