Wall clock time and date at job start Tue Mar 31 2020 00:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34170 * 125.43467 * 2 1 4 4 C 1.47022 * 105.95310 * 179.97438 * 3 2 1 5 5 C 1.47377 * 127.19381 * 179.97438 * 4 3 2 6 6 O 1.21615 * 119.99797 * 330.00176 * 5 4 3 7 7 N 1.34773 * 120.00149 * 150.00251 * 5 4 3 8 8 C 1.46924 * 120.63337 * 173.83104 * 7 5 4 9 9 C 1.53196 * 108.89227 * 126.29839 * 8 7 5 10 10 C 1.53353 * 109.14555 * 54.58141 * 9 8 7 11 11 N 1.46499 * 109.41758 * 178.67226 * 10 9 8 12 12 C 1.36933 * 120.00481 * 275.12747 * 11 10 9 13 13 H 1.07998 * 119.99716 * 0.02562 * 12 11 10 14 14 C 1.38810 * 120.00353 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99784 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00236 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47447 * 90.00034 * 16 14 12 18 18 H 1.48500 * 109.47253 * 210.00478 * 16 14 12 19 19 H 1.48500 * 109.46942 * 329.99997 * 16 14 12 20 20 C 1.53044 * 109.61014 * 298.71408 * 10 9 8 21 21 C 1.46924 * 120.62882 * 353.81800 * 7 5 4 22 22 C 1.36420 * 105.61500 * 0.23105 * 4 3 2 23 23 O 1.33655 * 108.39254 * 359.62929 * 22 4 3 24 24 H 1.09000 * 109.47039 * 90.00355 * 1 2 3 25 25 H 1.09007 * 109.47193 * 209.99682 * 1 2 3 26 26 H 1.08998 * 109.47346 * 329.99888 * 1 2 3 27 27 H 1.07997 * 127.02653 * 359.97438 * 3 2 1 28 28 H 1.08994 * 109.59233 * 246.15988 * 8 7 5 29 29 H 1.09006 * 109.58512 * 6.44603 * 8 7 5 30 30 H 1.08997 * 109.49971 * 174.66107 * 9 8 7 31 31 H 1.09003 * 109.49929 * 294.76467 * 9 8 7 32 32 H 1.09003 * 109.42175 * 58.75350 * 10 9 8 33 33 H 0.97005 * 119.99635 * 95.13244 * 11 10 9 34 34 H 0.97004 * 119.99833 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.49512 * 301.42092 * 20 10 9 36 36 H 1.08998 * 109.49476 * 181.32861 * 20 10 9 37 37 H 1.08993 * 109.58883 * 353.41072 * 21 7 5 38 38 H 1.08997 * 109.59000 * 113.70044 * 21 7 5 39 39 H 1.07999 * 125.80237 * 179.75654 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4125 0.0003 6 8 4.9095 2.5084 -0.5270 7 7 6.0207 0.9385 0.5844 8 6 7.2898 1.6710 0.4765 9 6 7.8486 1.9052 1.8836 10 6 7.9557 0.5603 2.6125 11 7 8.5193 0.7736 3.9478 12 6 9.8770 0.8280 4.1174 13 1 10.5323 0.7141 3.2666 14 6 10.4109 1.0307 5.3825 15 7 9.6122 1.1700 6.4193 16 14 12.2630 1.1056 5.6137 17 1 12.7240 2.5095 5.4659 18 1 12.6132 0.6097 6.9689 19 1 12.9243 0.2571 4.5899 20 6 6.5655 -0.0670 2.7400 21 6 5.9938 -0.3203 1.3415 22 6 3.5790 -0.7582 -0.0043 23 8 2.2852 -1.0935 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.9595 2.1230 -0.0004 28 1 8.0011 1.0859 -0.1064 29 1 7.1178 2.6298 -0.0126 30 1 8.8349 2.3635 1.8117 31 1 7.1794 2.5654 2.4355 32 1 8.6051 -0.1079 2.0468 33 1 7.9306 0.8763 4.7120 34 1 9.9853 1.3113 7.3035 35 1 5.9087 0.6118 3.2841 36 1 6.6406 -1.0113 3.2790 37 1 4.9664 -0.6744 1.4255 38 1 6.5974 -1.0686 0.8279 39 1 4.4103 -1.4476 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991679004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:01 Heat of formation + Delta-G solvation = -27.349718 kcal Electronic energy + Delta-G solvation = -21494.453532 eV Core-core repulsion = 18210.223306 eV Total energy + Delta-G solvation = -3284.230225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.60552 -41.04408 -38.69121 -36.21104 -34.29338 -33.84834 -33.12259 -31.80823 -30.97036 -27.64982 -26.87138 -25.26141 -24.19107 -23.37978 -22.00828 -21.38906 -20.18766 -19.15602 -18.07104 -17.78869 -17.23692 -16.89079 -16.69138 -16.15954 -15.49832 -15.40011 -15.29879 -14.86892 -14.53583 -14.31295 -14.00829 -13.92065 -13.78993 -13.73585 -13.26644 -13.12152 -12.85233 -12.72097 -12.57077 -12.22897 -12.16391 -11.97665 -11.69056 -11.45637 -11.14609 -10.90674 -10.75113 -9.75728 -9.49282 -9.01419 -7.93819 -5.22443 0.36714 1.03362 1.47803 1.49206 1.57301 1.75154 1.95077 2.19632 2.56629 3.39069 3.41999 3.67155 3.81270 3.83457 3.89749 4.12367 4.14284 4.28022 4.37842 4.42041 4.51782 4.58670 4.71681 4.75373 4.76556 4.81245 4.83880 4.88392 4.95128 5.07524 5.12424 5.30116 5.39882 5.48094 5.53465 5.57062 6.01368 6.28132 6.33333 7.05229 7.34239 8.10153 8.32644 9.29816 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.003495 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.839888 B = 8009.665462 C = 8373.470831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.004 4.004 3 C -0.198 4.198 4 C -0.257 4.257 5 C 0.583 3.417 6 O -0.588 6.588 7 N -0.600 5.600 8 C 0.122 3.878 9 C -0.139 4.139 10 C 0.173 3.827 11 N -0.738 5.738 12 C -0.236 4.236 13 H 0.079 0.921 14 C -0.078 4.078 15 N -0.972 5.972 16 Si 0.970 3.030 17 H -0.291 1.291 18 H -0.297 1.297 19 H -0.266 1.266 20 C -0.131 4.131 21 C 0.101 3.899 22 C 0.034 3.966 23 O -0.174 6.174 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.152 0.848 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.370 0.630 34 H 0.250 0.750 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 -7.830 -15.051 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.053 4.053 3 C -0.217 4.217 4 C -0.262 4.262 5 C 0.373 3.627 6 O -0.470 6.470 7 N -0.332 5.332 8 C -0.001 4.001 9 C -0.180 4.180 10 C 0.065 3.935 11 N -0.377 5.377 12 C -0.367 4.367 13 H 0.097 0.903 14 C -0.270 4.270 15 N -0.623 5.623 16 Si 0.800 3.200 17 H -0.219 1.219 18 H -0.224 1.224 19 H -0.191 1.191 20 C -0.170 4.170 21 C -0.021 4.021 22 C -0.036 4.036 23 O -0.069 6.069 24 H 0.116 0.884 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.170 0.830 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -16.777 -7.578 -15.358 23.975 hybrid contribution 1.242 1.014 0.993 1.886 sum -15.536 -6.564 -14.364 22.154 Atomic orbital electron populations 1.20538 0.81872 1.05532 1.05030 1.22905 0.95579 0.82755 1.04055 1.22612 0.90164 1.00388 1.08567 1.21410 0.93977 0.94719 1.16087 1.17735 0.82690 0.84741 0.77495 1.90729 1.85008 1.22658 1.48652 1.48070 1.08666 1.24966 1.51461 1.21575 0.84064 0.97600 0.96826 1.22523 0.99982 1.00187 0.95318 1.20504 0.93529 0.93553 0.85922 1.42671 1.03630 1.86678 1.04705 1.19637 0.84507 1.39407 0.93196 0.90336 1.25546 1.01886 1.03867 0.95707 1.69821 1.35035 1.58483 0.98918 0.85180 0.80572 0.77482 0.76792 1.21894 1.22400 1.19077 1.22087 0.95863 1.01711 0.97314 1.22367 1.03997 0.85033 0.90700 1.25216 0.84747 0.94715 0.98894 1.83783 1.16629 1.35582 1.70935 0.88424 0.88955 0.88058 0.83014 0.89003 0.90774 0.92093 0.94759 0.92461 0.79813 0.94164 0.93472 0.89483 0.87120 0.87480 0.73286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.40 71.24 0.74 0.09 16 2 C 0.00 -0.07 7.28 24.76 0.18 0.11 16 3 C -0.20 -4.56 11.01 23.65 0.26 -4.30 16 4 C -0.26 -6.38 5.71 -18.99 -0.11 -6.49 16 5 C 0.58 18.07 7.65 86.65 0.66 18.73 16 6 O -0.59 -23.10 16.50 -4.08 -0.07 -23.16 16 7 N -0.60 -16.41 2.97 -822.85 -2.45 -18.85 16 8 C 0.12 3.62 6.43 86.36 0.56 4.17 16 9 C -0.14 -5.01 5.69 30.78 0.18 -4.84 16 10 C 0.17 6.41 2.73 45.12 0.12 6.54 16 11 N -0.74 -36.34 5.12 -322.31 -1.65 -37.99 16 12 C -0.24 -12.78 9.93 84.03 0.83 -11.95 16 13 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 14 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 15 N -0.97 -59.45 13.06 21.65 0.28 -59.17 16 16 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 17 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 18 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C -0.13 -3.83 5.55 30.67 0.17 -3.66 16 21 C 0.10 2.12 5.26 86.36 0.45 2.57 16 22 C 0.03 0.58 9.72 67.40 0.66 1.23 16 23 O -0.17 -3.07 10.52 4.50 0.05 -3.02 16 24 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 28 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.41 7.00 -2.38 -0.02 2.39 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 33 H 0.37 19.92 7.80 -92.70 -0.72 19.20 16 34 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.11 1.85 4.27 -2.39 -0.01 1.84 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.25 2.26 6.49 -2.91 -0.02 2.24 16 Total: -1.00 -74.75 323.01 3.70 -71.05 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.34 Total: 25.07 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.17 Total: -1.77 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -3.81 Total: -116.00 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.02 Total: -26.18 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -74.75 3.70 -71.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991679004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.697 kcal (2) G-P(sol) polarization free energy of solvation -74.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds