Wall clock time and date at job start Tue Mar 31 2020 00:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33658 * 125.80007 * 2 1 4 4 C 1.34214 * 110.90709 * 180.26553 * 3 2 1 5 5 C 1.34178 * 109.12581 * 359.76308 * 4 3 2 6 6 C 1.36416 * 125.80370 * 179.85810 * 2 1 3 7 7 C 1.47383 * 127.18957 * 0.02562 * 6 2 1 8 8 O 1.21609 * 120.00210 * 34.36004 * 7 6 2 9 9 N 1.34777 * 119.99832 * 214.36132 * 7 6 2 10 10 C 1.46498 * 119.99936 * 5.34503 * 9 7 6 11 11 C 1.46501 * 120.00083 * 185.33987 * 9 7 6 12 12 C 1.53778 * 113.69159 * 197.04976 * 11 9 7 13 13 C 1.53784 * 87.07967 * 89.12987 * 12 11 9 14 14 N 1.46499 * 113.61653 * 270.88321 * 13 12 11 15 15 C 1.36930 * 120.00296 * 257.42099 * 14 13 12 16 16 H 1.08007 * 119.99861 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00316 * 179.97438 * 15 14 13 18 18 N 1.31613 * 119.99682 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99941 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47383 * 59.99925 * 19 17 15 21 21 H 1.48501 * 109.46882 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46901 * 299.99864 * 19 17 15 23 23 C 1.53777 * 113.61434 * 294.58847 * 11 9 7 24 24 H 1.08994 * 109.47363 * 270.13817 * 1 2 3 25 25 H 1.09003 * 109.47100 * 30.14310 * 1 2 3 26 26 H 1.08999 * 109.46713 * 150.14049 * 1 2 3 27 27 H 1.07996 * 125.44045 * 179.76277 * 4 3 2 28 28 H 1.07997 * 127.02751 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.47151 * 265.12256 * 10 9 7 30 30 H 1.09003 * 109.47716 * 25.12809 * 10 9 7 31 31 H 1.09000 * 109.47519 * 145.12430 * 10 9 7 32 32 H 1.09000 * 112.84764 * 65.78441 * 11 9 7 33 33 H 1.08998 * 113.61461 * 203.67306 * 12 11 9 34 34 H 1.08993 * 113.61504 * 334.58658 * 12 11 9 35 35 H 1.08999 * 113.69207 * 139.99166 * 13 12 11 36 36 H 0.97004 * 120.00190 * 77.42011 * 14 13 12 37 37 H 0.97001 * 119.99869 * 179.97438 * 18 17 15 38 38 H 1.09002 * 113.61605 * 25.35066 * 23 11 9 39 39 H 1.09003 * 113.61223 * 156.24399 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 -0.0058 5 6 3.6850 -0.5990 -0.0046 6 6 2.3051 -1.1064 0.0027 7 6 1.8740 -2.5157 0.0057 8 8 0.8650 -2.8443 -0.5883 9 7 2.5981 -3.4405 0.6668 10 6 3.7462 -3.0289 1.4784 11 6 2.2370 -4.8572 0.5739 12 6 2.8646 -5.7283 1.6749 13 6 1.6217 -5.4125 2.5238 14 7 1.7575 -4.2002 3.3349 15 6 2.0161 -4.2990 4.6759 16 1 2.1204 -5.2708 5.1356 17 6 2.1454 -3.1502 5.4444 18 7 2.0188 -1.9660 4.8841 19 14 2.4989 -3.2851 7.2737 20 1 3.7843 -3.9999 7.4782 21 1 2.5895 -1.9246 7.8620 22 1 1.4031 -4.0380 7.9354 23 6 0.8719 -5.1873 1.2002 24 1 -0.3634 0.0025 1.0276 25 1 -0.3633 0.8887 -0.5161 26 1 -0.3633 -0.8913 -0.5117 27 1 4.4172 1.4285 -0.0107 28 1 4.5928 -1.1839 -0.0086 29 1 4.6579 -3.1128 0.8870 30 1 3.6138 -1.9950 1.7973 31 1 3.8211 -3.6726 2.3548 32 1 2.3662 -5.2620 -0.4298 33 1 2.9517 -6.7802 1.4029 34 1 3.7879 -5.3177 2.0833 35 1 1.2533 -6.2647 3.0948 36 1 1.6643 -3.3274 2.9220 37 1 2.1088 -1.1633 5.4212 38 1 0.1866 -4.3400 1.2252 39 1 0.4142 -6.0913 0.7983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998423554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:21 Heat of formation + Delta-G solvation = 30.707780 kcal Electronic energy + Delta-G solvation = -22754.686930 eV Core-core repulsion = 19472.974266 eV Total energy + Delta-G solvation = -3281.712663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -42.31255 -39.91101 -37.54700 -34.19415 -33.29427 -32.39953 -31.58543 -29.90512 -26.96381 -26.57667 -24.99287 -24.25736 -23.39017 -21.90532 -20.82027 -18.98899 -17.99140 -17.45041 -16.89718 -16.12946 -15.89998 -15.44495 -15.12694 -14.74187 -14.20716 -13.87964 -13.52581 -13.00593 -12.93550 -12.83241 -12.75358 -12.68973 -12.30043 -12.02981 -11.65351 -11.50256 -11.26604 -11.13162 -10.86315 -10.75055 -10.25914 -10.06968 -9.80079 -9.61325 -9.47885 -9.22947 -8.87434 -8.33106 -7.99970 -6.98597 -5.80665 -3.09819 1.75223 2.33279 3.03897 3.38765 3.40463 3.45908 3.46172 3.71728 4.54972 4.74311 4.91112 5.14445 5.21526 5.28154 5.43735 5.48380 5.52973 5.72165 5.74850 5.83607 5.84886 5.88824 6.00277 6.03703 6.04717 6.20347 6.36221 6.40338 6.43774 6.52201 6.69792 6.72167 6.83250 6.95119 7.19589 7.29877 7.68349 7.91460 8.38108 8.66628 9.49359 10.07819 10.44034 11.40747 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.007072 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.894350 B = 3958.306287 C = 4981.229292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.070 3.930 3 O -0.179 6.179 4 C -0.047 4.047 5 C -0.181 4.181 6 C -0.230 4.230 7 C 0.594 3.406 8 O -0.549 6.549 9 N -0.577 5.577 10 C 0.071 3.929 11 C 0.130 3.870 12 C -0.184 4.184 13 C 0.164 3.836 14 N -0.704 5.704 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.009 4.009 18 N -0.928 5.928 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.161 4.161 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.106 0.894 27 H 0.204 0.796 28 H 0.155 0.845 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.389 0.611 37 H 0.256 0.744 38 H 0.074 0.926 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 1.804 -10.504 11.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.017 3.983 3 O -0.076 6.076 4 C -0.113 4.113 5 C -0.200 4.200 6 C -0.234 4.234 7 C 0.383 3.617 8 O -0.429 6.429 9 N -0.308 5.308 10 C -0.072 4.072 11 C 0.026 3.974 12 C -0.225 4.225 13 C 0.052 3.948 14 N -0.344 5.344 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.576 5.576 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.200 4.200 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.221 0.779 28 H 0.173 0.827 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.224 0.776 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.732 1.895 -10.587 11.097 hybrid contribution 0.663 0.154 0.998 1.208 sum 3.395 2.049 -9.588 10.376 Atomic orbital electron populations 1.20577 0.84221 1.04790 1.04493 1.22638 0.93902 0.83081 0.98675 1.83718 1.17069 1.35005 1.71761 1.23730 0.83576 0.96285 1.07668 1.22904 0.96676 0.94273 1.06145 1.21066 0.93361 0.93932 1.15081 1.17201 0.82510 0.83676 0.78332 1.90699 1.25089 1.81328 1.45766 1.47235 1.30508 1.05739 1.47309 1.22187 0.85855 1.03362 0.95771 1.21737 0.97584 0.80466 0.97598 1.24228 1.02243 0.98121 0.97927 1.21165 0.92360 0.91298 0.89996 1.42317 1.83997 1.02591 1.05539 1.19239 1.41026 0.92681 0.84615 0.91140 1.24729 1.02631 0.95260 0.97957 1.69660 1.56340 0.96575 1.34990 0.86291 0.78090 0.76445 0.85463 1.21289 1.21757 1.21320 1.23693 0.96567 1.01716 0.98043 0.89259 0.90561 0.87560 0.77941 0.82739 0.94473 0.90036 0.87987 0.91269 0.90153 0.90312 0.92158 0.77590 0.93463 0.90684 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.21 36.01 0.37 -0.85 16 2 C 0.07 1.16 7.37 -34.96 -0.26 0.90 16 3 O -0.18 -2.74 10.52 7.64 0.08 -2.66 16 4 C -0.05 -0.61 12.03 29.30 0.35 -0.26 16 5 C -0.18 -2.67 8.86 -37.45 -0.33 -3.00 16 6 C -0.23 -4.10 5.36 -103.27 -0.55 -4.66 16 7 C 0.59 11.66 7.26 -12.54 -0.09 11.57 16 8 O -0.55 -11.66 14.34 5.27 0.08 -11.59 16 9 N -0.58 -10.74 2.15 -174.29 -0.38 -11.11 16 10 C 0.07 1.27 7.40 59.85 0.44 1.71 16 11 C 0.13 2.28 4.14 -67.12 -0.28 2.01 16 12 C -0.18 -3.12 7.16 -25.92 -0.19 -3.31 16 13 C 0.16 3.31 4.55 -67.12 -0.31 3.00 16 14 N -0.70 -17.27 3.74 -52.64 -0.20 -17.47 16 15 C -0.24 -6.57 9.98 -15.06 -0.15 -6.72 16 16 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -26.88 13.06 55.49 0.72 -26.16 16 19 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 C -0.16 -2.98 7.12 -25.92 -0.18 -3.16 16 24 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.11 1.64 6.54 -51.93 -0.34 1.30 16 27 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.16 1.97 6.85 -52.49 -0.36 1.61 16 29 H 0.04 0.55 7.59 -51.93 -0.39 0.16 16 30 H 0.08 1.58 5.76 -51.93 -0.30 1.28 16 31 H 0.10 2.07 4.60 -51.93 -0.24 1.83 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.41 5.80 -51.93 -0.30 1.11 16 35 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 36 H 0.39 10.19 6.10 -40.82 -0.25 9.94 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.07 1.61 7.20 -51.93 -0.37 1.23 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -31.27 315.10 -6.30 -37.57 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.06 Total: 12.97 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -1.27 Total: -3.12 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.15 Total: -54.74 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.16 Total: -14.25 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.27 -6.30 -37.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998423554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.276 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds