Wall clock time and date at job start Tue Mar 31 2020 00:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33658 * 125.80007 * 2 1 4 4 C 1.34214 * 110.90709 * 180.26553 * 3 2 1 5 5 C 1.34178 * 109.12581 * 359.76308 * 4 3 2 6 6 C 1.36416 * 125.80370 * 179.85810 * 2 1 3 7 7 C 1.47383 * 127.18957 * 0.02562 * 6 2 1 8 8 O 1.21609 * 120.00210 * 34.36004 * 7 6 2 9 9 N 1.34777 * 119.99832 * 214.36132 * 7 6 2 10 10 C 1.46498 * 119.99936 * 5.34503 * 9 7 6 11 11 C 1.46501 * 120.00083 * 185.33987 * 9 7 6 12 12 C 1.53778 * 113.69159 * 197.04976 * 11 9 7 13 13 C 1.53784 * 87.07967 * 89.12987 * 12 11 9 14 14 N 1.46499 * 113.61653 * 270.88321 * 13 12 11 15 15 C 1.36930 * 120.00296 * 257.42099 * 14 13 12 16 16 H 1.08007 * 119.99861 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00316 * 179.97438 * 15 14 13 18 18 N 1.31613 * 119.99682 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99941 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47383 * 59.99925 * 19 17 15 21 21 H 1.48501 * 109.46882 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46901 * 299.99864 * 19 17 15 23 23 C 1.53777 * 113.61434 * 294.58847 * 11 9 7 24 24 H 1.08994 * 109.47363 * 270.13817 * 1 2 3 25 25 H 1.09003 * 109.47100 * 30.14310 * 1 2 3 26 26 H 1.08999 * 109.46713 * 150.14049 * 1 2 3 27 27 H 1.07996 * 125.44045 * 179.76277 * 4 3 2 28 28 H 1.07997 * 127.02751 * 179.97438 * 5 4 3 29 29 H 1.08997 * 109.47151 * 265.12256 * 10 9 7 30 30 H 1.09003 * 109.47716 * 25.12809 * 10 9 7 31 31 H 1.09000 * 109.47519 * 145.12430 * 10 9 7 32 32 H 1.09000 * 112.84764 * 65.78441 * 11 9 7 33 33 H 1.08998 * 113.61461 * 203.67306 * 12 11 9 34 34 H 1.08993 * 113.61504 * 334.58658 * 12 11 9 35 35 H 1.08999 * 113.69207 * 139.99166 * 13 12 11 36 36 H 0.97004 * 120.00190 * 77.42011 * 14 13 12 37 37 H 0.97001 * 119.99869 * 179.97438 * 18 17 15 38 38 H 1.09002 * 113.61605 * 25.35066 * 23 11 9 39 39 H 1.09003 * 113.61223 * 156.24399 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7391 -0.0058 5 6 3.6850 -0.5990 -0.0046 6 6 2.3051 -1.1064 0.0027 7 6 1.8740 -2.5157 0.0057 8 8 0.8650 -2.8443 -0.5883 9 7 2.5981 -3.4405 0.6668 10 6 3.7462 -3.0289 1.4784 11 6 2.2370 -4.8572 0.5739 12 6 2.8646 -5.7283 1.6749 13 6 1.6217 -5.4125 2.5238 14 7 1.7575 -4.2002 3.3349 15 6 2.0161 -4.2990 4.6759 16 1 2.1204 -5.2708 5.1356 17 6 2.1454 -3.1502 5.4444 18 7 2.0188 -1.9660 4.8841 19 14 2.4989 -3.2851 7.2737 20 1 3.7843 -3.9999 7.4782 21 1 2.5895 -1.9246 7.8620 22 1 1.4031 -4.0380 7.9354 23 6 0.8719 -5.1873 1.2002 24 1 -0.3634 0.0025 1.0276 25 1 -0.3633 0.8887 -0.5161 26 1 -0.3633 -0.8913 -0.5117 27 1 4.4172 1.4285 -0.0107 28 1 4.5928 -1.1839 -0.0086 29 1 4.6579 -3.1128 0.8870 30 1 3.6138 -1.9950 1.7973 31 1 3.8211 -3.6726 2.3548 32 1 2.3662 -5.2620 -0.4298 33 1 2.9517 -6.7802 1.4029 34 1 3.7879 -5.3177 2.0833 35 1 1.2533 -6.2647 3.0948 36 1 1.6643 -3.3274 2.9220 37 1 2.1088 -1.1633 5.4212 38 1 0.1866 -4.3400 1.2252 39 1 0.4142 -6.0913 0.7983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998423554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:16 Heat of formation + Delta-G solvation = 11.742884 kcal Electronic energy + Delta-G solvation = -22755.509309 eV Core-core repulsion = 19472.974266 eV Total energy + Delta-G solvation = -3282.535043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -43.49002 -41.38882 -39.07423 -35.79111 -35.07363 -33.71075 -32.74731 -31.83084 -28.32465 -27.89689 -26.62834 -25.77603 -25.07915 -23.29303 -22.11443 -20.34639 -19.46894 -19.27182 -18.25646 -17.49979 -17.29007 -16.77200 -16.61614 -16.54776 -15.64829 -15.43332 -15.08123 -14.82695 -14.26530 -14.21232 -13.96434 -13.89914 -13.64017 -13.48285 -13.24501 -12.99537 -12.73756 -12.69413 -12.55867 -12.48035 -12.18863 -11.69663 -11.64836 -11.21729 -10.88129 -10.78871 -10.57734 -9.59100 -9.37843 -8.94811 -7.89799 -5.18504 0.46433 1.20029 1.48847 1.50613 1.56434 1.83282 2.04568 2.34162 2.57627 3.40564 3.50835 3.67587 3.77874 3.89680 3.95264 4.02141 4.25884 4.33940 4.37115 4.42844 4.57117 4.61963 4.68931 4.73973 4.85375 4.88360 4.92827 4.98465 5.10612 5.16989 5.20875 5.35517 5.42229 5.45847 5.55044 5.78180 6.09645 6.31035 6.45856 7.19516 7.37793 8.14061 8.39412 9.31782 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.007072 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.894350 B = 3958.306287 C = 4981.229292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.053 3.947 3 O -0.182 6.182 4 C -0.032 4.032 5 C -0.196 4.196 6 C -0.262 4.262 7 C 0.585 3.415 8 O -0.576 6.576 9 N -0.578 5.578 10 C 0.082 3.918 11 C 0.125 3.875 12 C -0.159 4.159 13 C 0.144 3.856 14 N -0.717 5.717 15 C -0.243 4.243 16 H 0.076 0.924 17 C -0.066 4.066 18 N -0.960 5.960 19 Si 0.968 3.032 20 H -0.276 1.276 21 H -0.299 1.299 22 H -0.285 1.285 23 C -0.153 4.153 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.252 0.748 28 H 0.173 0.827 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.377 0.623 37 H 0.249 0.751 38 H 0.038 0.962 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 1.216 -10.943 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.000 4.000 3 O -0.078 6.078 4 C -0.097 4.097 5 C -0.215 4.215 6 C -0.266 4.266 7 C 0.375 3.625 8 O -0.458 6.458 9 N -0.309 5.309 10 C -0.060 4.060 11 C 0.022 3.978 12 C -0.200 4.200 13 C 0.034 3.966 14 N -0.356 5.356 15 C -0.375 4.375 16 H 0.094 0.906 17 C -0.259 4.259 18 N -0.610 5.610 19 Si 0.797 3.203 20 H -0.202 1.202 21 H -0.225 1.225 22 H -0.211 1.211 23 C -0.193 4.193 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.109 0.891 27 H 0.268 0.732 28 H 0.190 0.810 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.211 0.789 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.221 1.248 -11.036 11.881 hybrid contribution 0.187 0.285 1.095 1.147 sum 4.408 1.534 -9.941 10.982 Atomic orbital electron populations 1.20548 0.83489 1.05561 1.04133 1.22943 0.94793 0.83365 0.98910 1.83735 1.18018 1.34494 1.71577 1.24665 0.83553 0.96680 1.04755 1.23139 0.95926 0.95211 1.07229 1.21264 0.95476 0.93338 1.16552 1.17557 0.82223 0.84622 0.78075 1.90664 1.26121 1.81952 1.47081 1.47335 1.30539 1.06164 1.46866 1.22048 0.86955 1.01615 0.95407 1.21899 0.96843 0.80252 0.98780 1.24048 0.99920 1.00069 0.95939 1.21475 0.94870 0.89848 0.90456 1.42421 1.84383 1.03501 1.05287 1.19583 1.39335 0.92769 0.85805 0.90630 1.25433 1.03664 0.95098 1.01697 1.69822 1.58222 0.96923 1.35995 0.85308 0.78140 0.75869 0.80944 1.20241 1.22548 1.21109 1.23675 0.96453 1.01700 0.97429 0.90102 0.87475 0.89058 0.73246 0.81007 0.91063 0.91824 0.90281 0.89372 0.86376 0.91039 0.91902 0.78944 0.94254 0.94259 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.41 10.21 71.24 0.73 -1.69 16 2 C 0.05 1.78 7.37 25.26 0.19 1.96 16 3 O -0.18 -5.37 10.52 4.43 0.05 -5.32 16 4 C -0.03 -0.76 12.03 66.89 0.80 0.05 16 5 C -0.20 -5.56 8.86 23.65 0.21 -5.35 16 6 C -0.26 -9.43 5.36 -18.99 -0.10 -9.53 16 7 C 0.58 23.38 7.26 86.65 0.63 24.01 16 8 O -0.58 -25.18 14.34 -4.06 -0.06 -25.24 16 9 N -0.58 -21.39 2.15 -823.59 -1.77 -23.17 16 10 C 0.08 2.91 7.40 127.77 0.95 3.85 16 11 C 0.13 4.24 4.14 45.51 0.19 4.42 16 12 C -0.16 -5.03 7.16 31.12 0.22 -4.80 16 13 C 0.14 5.67 4.55 45.52 0.21 5.87 16 14 N -0.72 -35.47 3.74 -320.44 -1.20 -36.67 16 15 C -0.24 -13.09 9.98 84.04 0.84 -12.25 16 16 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 17 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 18 N -0.96 -56.80 13.06 21.65 0.28 -56.52 16 19 Si 0.97 45.15 29.55 68.60 2.03 47.17 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 C -0.15 -5.56 7.12 31.12 0.22 -5.34 16 24 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.09 2.98 6.54 -2.39 -0.02 2.96 16 27 H 0.25 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.17 4.06 6.85 -2.91 -0.02 4.04 16 29 H 0.07 1.99 7.59 -2.39 -0.02 1.97 16 30 H 0.06 2.49 5.76 -2.39 -0.01 2.47 16 31 H 0.08 3.19 4.60 -2.39 -0.01 3.18 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.07 2.42 5.80 -2.39 -0.01 2.40 16 35 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 36 H 0.38 20.31 6.10 -92.71 -0.57 19.75 16 37 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.04 1.71 7.20 -2.39 -0.02 1.70 16 39 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -69.16 315.10 5.39 -63.78 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.51 Total: 37.97 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.55 Total: -2.00 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -2.69 Total: -116.35 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.01 Total: -30.56 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.16 5.39 -63.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998423554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.522 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds