Wall clock time and date at job start Tue Mar 31 2020 01:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40369 * 126.64727 * 2 1 4 4 C 1.35126 * 107.11162 * 179.97438 * 3 2 1 5 5 O 1.33925 * 108.77116 * 359.77174 * 4 3 2 6 6 C 1.34909 * 109.38424 * 0.37400 * 5 4 3 7 7 C 1.46661 * 125.98881 * 179.88175 * 6 5 4 8 8 O 1.21694 * 120.00317 * 184.93852 * 7 6 5 9 9 N 1.34777 * 119.99661 * 4.94907 * 7 6 5 10 10 C 1.46498 * 120.00185 * 5.28377 * 9 7 6 11 11 C 1.46504 * 119.99809 * 185.28759 * 9 7 6 12 12 C 1.53777 * 113.61317 * 61.97264 * 11 9 7 13 13 C 1.53783 * 87.08418 * 89.11704 * 12 11 9 14 14 N 1.46494 * 113.60952 * 270.79860 * 13 12 11 15 15 C 1.36943 * 119.99614 * 198.73447 * 14 13 12 16 16 H 1.08000 * 119.99876 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99935 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46933 * 89.99892 * 19 17 15 21 21 H 1.48499 * 109.47227 * 209.99771 * 19 17 15 22 22 H 1.48497 * 109.46869 * 330.00192 * 19 17 15 23 23 C 1.53778 * 87.16932 * 25.38906 * 13 12 11 24 24 H 1.09003 * 109.46980 * 270.04040 * 1 2 3 25 25 H 1.09004 * 109.47454 * 30.03668 * 1 2 3 26 26 H 1.08995 * 109.47490 * 150.04423 * 1 2 3 27 27 H 1.08000 * 126.43747 * 359.96596 * 3 2 1 28 28 H 1.08005 * 125.61251 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47028 * 174.44897 * 10 9 7 30 30 H 1.08998 * 109.47297 * 294.44334 * 10 9 7 31 31 H 1.08995 * 109.47249 * 54.44679 * 10 9 7 32 32 H 1.08999 * 112.84685 * 290.77794 * 11 9 7 33 33 H 1.09006 * 113.61746 * 334.56343 * 12 11 9 34 34 H 1.09002 * 113.61214 * 203.66736 * 12 11 9 35 35 H 1.08992 * 113.61402 * 139.98129 * 13 12 11 36 36 H 0.97001 * 120.00390 * 18.73946 * 14 13 12 37 37 H 0.96998 * 119.99928 * 179.97438 * 18 17 15 38 38 H 1.09002 * 113.61776 * 89.16223 * 23 13 12 39 39 H 1.09001 * 113.61246 * 220.06256 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6004 -0.6648 0.0060 6 6 2.3220 -1.0955 0.0006 7 6 1.8842 -2.4953 0.0015 8 8 0.7009 -2.7628 -0.0944 9 7 2.7924 -3.4853 0.1088 10 6 4.2027 -3.1636 0.3406 11 6 2.3693 -4.8831 -0.0065 12 6 1.7579 -5.2308 -1.3740 13 6 3.1846 -5.5689 -1.8379 14 7 3.9065 -4.4234 -2.3973 15 6 5.0062 -4.6269 -3.1877 16 1 5.3409 -5.6317 -3.3989 17 6 5.6906 -3.5416 -3.7173 18 7 5.2829 -2.3169 -3.4595 19 14 7.1902 -3.8191 -4.7960 20 1 6.7661 -3.9276 -6.2150 21 1 8.1267 -2.6765 -4.6453 22 1 7.8700 -5.0738 -4.3852 23 6 3.5170 -5.8456 -0.3622 24 1 -0.3633 0.0007 1.0277 25 1 -0.3634 0.8897 -0.5144 26 1 -0.3634 -0.8903 -0.5131 27 1 2.0306 2.1595 -0.0005 28 1 4.5046 1.2916 0.0011 29 1 4.7645 -4.0846 0.4968 30 1 4.6024 -2.6368 -0.5258 31 1 4.2906 -2.5302 1.2233 32 1 1.7653 -5.2136 0.8385 33 1 1.3229 -4.3739 -1.8885 34 1 1.0915 -6.0930 -1.3478 35 1 3.2395 -6.4541 -2.4713 36 1 3.6056 -3.5209 -2.2079 37 1 5.7613 -1.5585 -3.8293 38 1 3.3325 -6.8761 -0.0589 39 1 4.5003 -5.4842 -0.0610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998455139.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:01 Heat of formation + Delta-G solvation = 31.064550 kcal Electronic energy + Delta-G solvation = -22875.271294 eV Core-core repulsion = 19593.574101 eV Total energy + Delta-G solvation = -3281.697193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.36327 -39.91189 -37.61402 -34.43711 -33.56557 -33.06453 -30.21757 -29.73999 -27.48366 -26.74623 -24.99848 -24.17819 -23.27650 -21.79371 -20.82877 -19.24111 -18.09163 -17.47522 -16.84714 -16.26434 -15.85265 -15.62605 -15.11540 -14.71705 -13.95961 -13.79559 -13.49863 -13.02607 -12.98520 -12.91228 -12.74617 -12.42256 -12.32488 -11.99892 -11.72427 -11.53307 -11.32729 -11.03235 -10.87793 -10.74312 -10.23147 -10.09858 -9.84626 -9.64241 -9.41741 -9.36927 -8.89449 -8.38105 -7.99051 -6.98073 -5.79007 -3.08283 1.44953 2.62448 3.03874 3.40704 3.46595 3.47445 3.52858 3.60357 4.55826 4.80220 5.03769 5.05069 5.20322 5.26148 5.46935 5.50531 5.67419 5.67773 5.80126 5.85225 5.89555 5.90568 5.97000 6.08399 6.18101 6.26653 6.31785 6.39414 6.49420 6.64629 6.68611 6.73542 6.81292 6.91560 7.08636 7.30025 7.69658 7.78312 8.39233 8.49054 9.50423 10.08712 10.44673 11.42259 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.007317 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.911824 B = 3825.946810 C = 5011.093431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.102 4.102 3 C -0.232 4.232 4 C -0.005 4.005 5 O -0.142 6.142 6 C -0.068 4.068 7 C 0.603 3.397 8 O -0.529 6.529 9 N -0.576 5.576 10 C 0.076 3.924 11 C 0.129 3.871 12 C -0.160 4.160 13 C 0.165 3.835 14 N -0.704 5.704 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.926 5.926 19 Si 0.906 3.094 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.186 4.186 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.149 0.851 28 H 0.204 0.796 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.081 0.919 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 2.830 9.916 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.251 4.251 4 C -0.075 4.075 5 O -0.036 6.036 6 C -0.120 4.120 7 C 0.392 3.608 8 O -0.409 6.409 9 N -0.307 5.307 10 C -0.066 4.066 11 C 0.026 3.974 12 C -0.200 4.200 13 C 0.053 3.947 14 N -0.344 5.344 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.574 5.574 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.227 4.227 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.167 0.833 28 H 0.221 0.779 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.223 0.777 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.789 2.406 9.740 11.117 hybrid contribution 0.910 0.575 -0.581 1.224 sum -3.878 2.981 9.159 10.383 Atomic orbital electron populations 1.20366 0.88723 1.03463 1.02197 1.20515 0.97318 0.91111 1.01514 1.21608 0.92542 0.99713 1.11256 1.24308 0.99634 0.81461 1.02131 1.84336 1.27922 1.21885 1.69420 1.21813 0.81636 0.94708 1.13853 1.16528 0.85284 0.81863 0.77138 1.90772 1.15905 1.82407 1.51808 1.47335 1.08656 1.05169 1.69553 1.22061 0.80507 1.01928 1.02151 1.21843 0.97650 0.80382 0.97574 1.23694 0.98431 1.01730 0.96139 1.21146 0.90145 0.92123 0.91281 1.42285 1.31577 1.03171 1.57384 1.19263 1.03107 0.92716 1.22244 0.91117 1.24731 0.99598 0.95256 1.01055 1.69675 1.41801 0.97024 1.48926 0.86217 0.82661 0.76838 0.80598 1.21823 1.21851 1.20806 1.24331 0.98206 0.97472 1.02647 0.91490 0.91907 0.89449 0.83279 0.77928 0.89749 0.88901 0.93276 0.90948 0.90865 0.89649 0.92180 0.77725 0.93557 0.90042 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.88 36.00 0.36 -0.96 16 2 C -0.10 -1.69 6.20 -104.43 -0.65 -2.33 16 3 C -0.23 -3.27 10.83 -39.89 -0.43 -3.71 16 4 C 0.00 -0.07 12.08 29.63 0.36 0.29 16 5 O -0.14 -2.54 7.50 5.02 0.04 -2.50 16 6 C -0.07 -1.27 6.80 -36.80 -0.25 -1.52 16 7 C 0.60 11.99 7.24 -12.86 -0.09 11.90 16 8 O -0.53 -11.07 13.82 5.19 0.07 -11.00 16 9 N -0.58 -10.80 2.06 -174.45 -0.36 -11.16 16 10 C 0.08 1.37 7.65 59.85 0.46 1.83 16 11 C 0.13 2.24 4.12 -67.03 -0.28 1.96 16 12 C -0.16 -2.95 7.13 -25.92 -0.18 -3.13 16 13 C 0.17 3.33 4.54 -67.12 -0.30 3.02 16 14 N -0.70 -17.38 4.45 -52.64 -0.23 -17.62 16 15 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 18 N -0.93 -26.89 13.06 55.49 0.72 -26.17 16 19 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.19 -3.12 7.20 -25.83 -0.19 -3.30 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.44 6.35 -51.93 -0.33 1.11 16 27 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.20 2.06 8.06 -52.48 -0.42 1.64 16 29 H 0.08 1.45 5.23 -51.93 -0.27 1.18 16 30 H 0.09 2.03 6.55 -51.93 -0.34 1.69 16 31 H 0.05 0.79 7.41 -51.93 -0.38 0.41 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.56 7.24 -51.93 -0.38 1.18 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 36 H 0.39 10.26 5.90 -40.82 -0.24 10.02 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.45 5.44 -51.93 -0.28 1.17 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -31.00 316.11 -6.62 -37.63 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.15 Total: 12.19 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.45 Total: -3.01 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.13 Total: -54.94 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.11 Total: -13.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.00 -6.62 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998455139.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.691 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds