Wall clock time and date at job start Tue Mar 31 2020 01:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40369 * 126.64727 * 2 1 4 4 C 1.35126 * 107.11162 * 179.97438 * 3 2 1 5 5 O 1.33925 * 108.77116 * 359.77174 * 4 3 2 6 6 C 1.34909 * 109.38424 * 0.37400 * 5 4 3 7 7 C 1.46661 * 125.98881 * 179.88175 * 6 5 4 8 8 O 1.21694 * 120.00317 * 184.93852 * 7 6 5 9 9 N 1.34777 * 119.99661 * 4.94907 * 7 6 5 10 10 C 1.46498 * 120.00185 * 5.28377 * 9 7 6 11 11 C 1.46504 * 119.99809 * 185.28759 * 9 7 6 12 12 C 1.53777 * 113.61317 * 61.97264 * 11 9 7 13 13 C 1.53783 * 87.08418 * 89.11704 * 12 11 9 14 14 N 1.46494 * 113.60952 * 270.79860 * 13 12 11 15 15 C 1.36943 * 119.99614 * 198.73447 * 14 13 12 16 16 H 1.08000 * 119.99876 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99935 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46933 * 89.99892 * 19 17 15 21 21 H 1.48499 * 109.47227 * 209.99771 * 19 17 15 22 22 H 1.48497 * 109.46869 * 330.00192 * 19 17 15 23 23 C 1.53778 * 87.16932 * 25.38906 * 13 12 11 24 24 H 1.09003 * 109.46980 * 270.04040 * 1 2 3 25 25 H 1.09004 * 109.47454 * 30.03668 * 1 2 3 26 26 H 1.08995 * 109.47490 * 150.04423 * 1 2 3 27 27 H 1.08000 * 126.43747 * 359.96596 * 3 2 1 28 28 H 1.08005 * 125.61251 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47028 * 174.44897 * 10 9 7 30 30 H 1.08998 * 109.47297 * 294.44334 * 10 9 7 31 31 H 1.08995 * 109.47249 * 54.44679 * 10 9 7 32 32 H 1.08999 * 112.84685 * 290.77794 * 11 9 7 33 33 H 1.09006 * 113.61746 * 334.56343 * 12 11 9 34 34 H 1.09002 * 113.61214 * 203.66736 * 12 11 9 35 35 H 1.08992 * 113.61402 * 139.98129 * 13 12 11 36 36 H 0.97001 * 120.00390 * 18.73946 * 14 13 12 37 37 H 0.96998 * 119.99928 * 179.97438 * 18 17 15 38 38 H 1.09002 * 113.61776 * 89.16223 * 23 13 12 39 39 H 1.09001 * 113.61246 * 220.06256 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6004 -0.6648 0.0060 6 6 2.3220 -1.0955 0.0006 7 6 1.8842 -2.4953 0.0015 8 8 0.7009 -2.7628 -0.0944 9 7 2.7924 -3.4853 0.1088 10 6 4.2027 -3.1636 0.3406 11 6 2.3693 -4.8831 -0.0065 12 6 1.7579 -5.2308 -1.3740 13 6 3.1846 -5.5689 -1.8379 14 7 3.9065 -4.4234 -2.3973 15 6 5.0062 -4.6269 -3.1877 16 1 5.3409 -5.6317 -3.3989 17 6 5.6906 -3.5416 -3.7173 18 7 5.2829 -2.3169 -3.4595 19 14 7.1902 -3.8191 -4.7960 20 1 6.7661 -3.9276 -6.2150 21 1 8.1267 -2.6765 -4.6453 22 1 7.8700 -5.0738 -4.3852 23 6 3.5170 -5.8456 -0.3622 24 1 -0.3633 0.0007 1.0277 25 1 -0.3634 0.8897 -0.5144 26 1 -0.3634 -0.8903 -0.5131 27 1 2.0306 2.1595 -0.0005 28 1 4.5046 1.2916 0.0011 29 1 4.7645 -4.0846 0.4968 30 1 4.6024 -2.6368 -0.5258 31 1 4.2906 -2.5302 1.2233 32 1 1.7653 -5.2136 0.8385 33 1 1.3229 -4.3739 -1.8885 34 1 1.0915 -6.0930 -1.3478 35 1 3.2395 -6.4541 -2.4713 36 1 3.6056 -3.5209 -2.2079 37 1 5.7613 -1.5585 -3.8293 38 1 3.3325 -6.8761 -0.0589 39 1 4.5003 -5.4842 -0.0610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998455139.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:00 Heat of formation + Delta-G solvation = 12.302463 kcal Electronic energy + Delta-G solvation = -22876.084879 eV Core-core repulsion = 19593.574101 eV Total energy + Delta-G solvation = -3282.510778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.60363 -41.37795 -39.12596 -35.95431 -35.10501 -34.68642 -31.93691 -31.16124 -28.77374 -28.17653 -26.63857 -25.74565 -24.92907 -23.14643 -22.14304 -20.60420 -19.57798 -19.32644 -18.26940 -17.73608 -17.22250 -16.88835 -16.61091 -16.57044 -15.57707 -15.35765 -14.91298 -14.82608 -14.43023 -14.11394 -13.91785 -13.83725 -13.58338 -13.44077 -13.27134 -13.08504 -12.77633 -12.73824 -12.52718 -12.39301 -12.12550 -11.70393 -11.67639 -11.25768 -10.90978 -10.80836 -10.57827 -9.74450 -9.35731 -8.94522 -7.88173 -5.17405 0.13183 1.46588 1.48483 1.49731 1.57569 1.74734 2.17534 2.24181 2.57939 3.41167 3.46775 3.74062 3.84096 3.88745 3.95120 3.99742 4.22831 4.28803 4.36989 4.60221 4.61618 4.64839 4.77554 4.80639 4.83855 4.87140 5.01598 5.07945 5.12194 5.18392 5.24060 5.34349 5.42623 5.50759 5.56416 5.71841 6.03680 6.32262 6.34387 7.03613 7.38397 8.14620 8.39511 9.33322 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.007317 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.911824 B = 3825.946810 C = 5011.093431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.104 4.104 3 C -0.232 4.232 4 C -0.002 4.002 5 O -0.163 6.163 6 C -0.114 4.114 7 C 0.594 3.406 8 O -0.552 6.552 9 N -0.579 5.579 10 C 0.091 3.909 11 C 0.124 3.876 12 C -0.152 4.152 13 C 0.144 3.856 14 N -0.718 5.718 15 C -0.242 4.242 16 H 0.076 0.924 17 C -0.067 4.067 18 N -0.958 5.958 19 Si 0.968 3.032 20 H -0.295 1.295 21 H -0.296 1.296 22 H -0.270 1.270 23 C -0.161 4.161 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.185 0.815 28 H 0.242 0.758 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.036 0.964 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.375 0.625 37 H 0.248 0.752 38 H 0.121 0.879 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 2.594 10.859 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.250 4.250 4 C -0.072 4.072 5 O -0.058 6.058 6 C -0.165 4.165 7 C 0.384 3.616 8 O -0.434 6.434 9 N -0.310 5.310 10 C -0.051 4.051 11 C 0.022 3.978 12 C -0.191 4.191 13 C 0.033 3.967 14 N -0.357 5.357 15 C -0.373 4.373 16 H 0.094 0.906 17 C -0.260 4.260 18 N -0.608 5.608 19 Si 0.798 3.202 20 H -0.223 1.223 21 H -0.223 1.223 22 H -0.195 1.195 23 C -0.201 4.201 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.202 0.798 28 H 0.258 0.742 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.055 0.945 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.209 0.791 37 H 0.057 0.943 38 H 0.139 0.861 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.559 2.110 10.705 11.826 hybrid contribution 0.780 0.666 -0.879 1.351 sum -3.780 2.776 9.826 10.888 Atomic orbital electron populations 1.20390 0.87588 1.03393 1.03119 1.21008 0.98404 0.91480 0.99806 1.22009 0.91853 1.00653 1.10509 1.25240 1.01484 0.80486 1.00011 1.84308 1.27746 1.23692 1.70082 1.21825 0.82546 0.94825 1.17354 1.16819 0.85247 0.82732 0.76815 1.90732 1.16579 1.83022 1.53055 1.47437 1.08589 1.05683 1.69259 1.21855 0.80272 1.02032 1.00977 1.22023 0.98062 0.80022 0.97711 1.23680 0.97664 1.01556 0.96229 1.21475 0.91150 0.90848 0.93182 1.42410 1.31572 1.03890 1.57819 1.19601 1.03363 0.92800 1.21570 0.90628 1.25449 1.02465 0.95173 1.02943 1.69843 1.43016 0.97556 1.50341 0.85228 0.79604 0.76872 0.78508 1.22273 1.22321 1.19453 1.24158 0.97503 0.99424 0.99043 0.89986 0.89392 0.91978 0.79779 0.74160 0.88982 0.92815 0.91643 0.88815 0.94506 0.86335 0.91862 0.79139 0.94292 0.86065 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.51 9.88 71.24 0.70 -1.80 16 2 C -0.10 -3.41 6.20 -19.74 -0.12 -3.53 16 3 C -0.23 -6.11 10.83 22.07 0.24 -5.87 16 4 C 0.00 -0.07 12.08 67.10 0.81 0.75 16 5 O -0.16 -5.93 7.50 -4.94 -0.04 -5.97 16 6 C -0.11 -4.37 6.80 24.07 0.16 -4.20 16 7 C 0.59 24.30 7.24 86.44 0.63 24.92 16 8 O -0.55 -23.81 13.82 -4.33 -0.06 -23.87 16 9 N -0.58 -21.94 2.06 -824.06 -1.70 -23.64 16 10 C 0.09 3.34 7.65 127.77 0.98 4.32 16 11 C 0.12 4.19 4.12 45.57 0.19 4.38 16 12 C -0.15 -5.48 7.13 31.12 0.22 -5.26 16 13 C 0.14 5.67 4.54 45.52 0.21 5.88 16 14 N -0.72 -35.95 4.45 -320.47 -1.43 -37.38 16 15 C -0.24 -13.11 9.98 84.03 0.84 -12.27 16 16 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 17 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 18 N -0.96 -57.04 13.06 21.65 0.28 -56.76 16 19 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C -0.16 -5.06 7.20 31.18 0.22 -4.84 16 24 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.06 2.09 6.35 -2.39 -0.02 2.08 16 27 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 28 H 0.24 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.09 3.16 5.23 -2.39 -0.01 3.15 16 30 H 0.05 2.44 6.55 -2.39 -0.02 2.42 16 31 H 0.07 2.13 7.41 -2.39 -0.02 2.12 16 32 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.04 1.60 7.24 -2.38 -0.02 1.58 16 34 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.06 2.43 8.13 -2.39 -0.02 2.41 16 36 H 0.38 20.59 5.90 -92.71 -0.55 20.04 16 37 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.07 2.46 5.44 -2.39 -0.01 2.45 16 Total: -1.00 -69.33 316.11 5.15 -64.18 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: 0.53 Total: 36.81 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.54 Total: -0.84 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -2.85 Total: -117.78 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.10 Total: -29.84 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.33 5.15 -64.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998455139.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.478 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds