Wall clock time and date at job start Tue Mar 31 2020 00:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33657 * 125.80094 * 2 1 4 4 C 1.34216 * 110.90739 * 180.26722 * 3 2 1 5 5 C 1.34176 * 109.12314 * 359.76493 * 4 3 2 6 6 C 1.36419 * 125.80157 * 179.86165 * 2 1 3 7 7 C 1.47369 * 127.19299 * 0.02562 * 6 2 1 8 8 O 1.21616 * 120.00523 * 48.71169 * 7 6 2 9 9 N 1.34781 * 120.00146 * 228.71446 * 7 6 2 10 10 C 1.46989 * 120.61014 * 355.72045 * 9 7 6 11 11 C 1.53197 * 108.74154 * 126.38649 * 10 9 7 12 12 C 1.53047 * 109.33650 * 54.61907 * 11 10 9 13 13 C 1.53044 * 109.53823 * 298.62134 * 12 11 10 14 14 H 1.08997 * 109.49935 * 301.41547 * 13 12 11 15 15 N 1.46502 * 109.49790 * 181.34688 * 13 12 11 16 16 C 1.36938 * 119.99843 * 154.99817 * 15 13 12 17 17 H 1.08000 * 119.99624 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99755 * 180.02562 * 16 15 13 19 19 N 1.31623 * 120.00191 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47145 * 59.99404 * 20 18 16 22 22 H 1.48496 * 109.47345 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47073 * 300.00071 * 20 18 16 24 24 C 1.46924 * 120.63023 * 175.69300 * 9 7 6 25 25 H 1.09003 * 109.47228 * 270.13453 * 1 2 3 26 26 H 1.09001 * 109.47310 * 30.13735 * 1 2 3 27 27 H 1.09004 * 109.46904 * 150.13633 * 1 2 3 28 28 H 1.07998 * 125.43756 * 179.76137 * 4 3 2 29 29 H 1.08002 * 127.02212 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.63584 * 6.59278 * 10 9 7 31 31 H 1.09004 * 109.58045 * 246.14738 * 10 9 7 32 32 H 1.08992 * 109.49532 * 294.65697 * 11 10 9 33 33 H 1.08994 * 109.50202 * 174.58376 * 11 10 9 34 34 H 1.09001 * 109.46020 * 58.63749 * 12 11 10 35 35 H 1.09002 * 109.45877 * 178.60061 * 12 11 10 36 36 H 0.97002 * 119.99820 * 335.00792 * 15 13 12 37 37 H 0.96997 * 119.99473 * 179.97438 * 19 18 16 38 38 H 1.09009 * 109.58184 * 113.84806 * 24 9 7 39 39 H 1.08994 * 109.58886 * 353.42634 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 -0.0058 5 6 3.6849 -0.5990 -0.0047 6 6 2.3050 -1.1064 0.0027 7 6 1.8740 -2.5157 0.0055 8 8 1.0319 -2.8957 -0.7853 9 7 2.4131 -3.3835 0.8847 10 6 3.4976 -2.9622 1.7830 11 6 3.0974 -3.2895 3.2251 12 6 2.7372 -4.7735 3.3267 13 6 1.5452 -5.0744 2.4151 14 1 0.6981 -4.4538 2.7071 15 7 1.1808 -6.4881 2.5373 16 6 -0.0972 -6.8924 2.2572 17 1 -0.8363 -6.1691 1.9458 18 6 -0.4426 -8.2317 2.3735 19 7 0.4584 -9.1132 2.7526 20 14 -2.1857 -8.7834 1.9907 21 1 -2.5122 -8.4498 0.5809 22 1 -2.2955 -10.2509 2.1898 23 1 -3.1352 -8.0881 2.8965 24 6 1.9273 -4.7679 0.9636 25 1 -0.3634 0.0024 1.0277 26 1 -0.3634 0.8887 -0.5160 27 1 -0.3633 -0.8912 -0.5117 28 1 4.4172 1.4285 -0.0108 29 1 4.5928 -1.1840 -0.0087 30 1 3.6597 -1.8890 1.6834 31 1 4.4123 -3.4972 1.5272 32 1 2.2357 -2.6857 3.5094 33 1 3.9310 -3.0711 3.8925 34 1 3.5913 -5.3765 3.0184 35 1 2.4761 -5.0140 4.3572 36 1 1.8448 -7.1377 2.8169 37 1 0.2168 -10.0491 2.8342 38 1 2.7141 -5.4500 0.6410 39 1 1.0535 -4.8856 0.3230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998483816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:34 Heat of formation + Delta-G solvation = -8.912294 kcal Electronic energy + Delta-G solvation = -21930.369096 eV Core-core repulsion = 18646.938377 eV Total energy + Delta-G solvation = -3283.430719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.68360 -39.65468 -37.21240 -34.50728 -33.15598 -32.26256 -31.91521 -31.11997 -28.36366 -27.11164 -25.26178 -23.99428 -22.68432 -21.87827 -21.26286 -19.85950 -18.70092 -17.48987 -17.07342 -16.55585 -16.04199 -15.60374 -15.00716 -14.56849 -14.31708 -14.08794 -13.84057 -13.48082 -13.21017 -13.12837 -13.05866 -13.02923 -12.56819 -12.35628 -12.23827 -11.85606 -11.32480 -11.04006 -10.81501 -10.66427 -10.56237 -10.22321 -9.94518 -9.81903 -9.72635 -9.50609 -9.05607 -8.68277 -8.29292 -6.99180 -5.77734 -3.07616 1.43756 2.00052 2.69371 3.03433 3.37988 3.46799 3.50479 3.52354 4.39434 4.59163 4.65570 4.82546 5.00483 5.08235 5.14239 5.29393 5.35724 5.42194 5.47821 5.51351 5.58353 5.67608 5.72715 5.82280 5.94252 6.01524 6.07291 6.15105 6.18930 6.24020 6.37195 6.51146 6.76763 6.83600 6.92042 7.03407 7.70200 7.71816 8.39458 8.43532 9.52196 10.06184 10.41643 11.44518 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.004415 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.075617 B = 6340.227688 C = 7043.214046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.057 3.943 3 O -0.178 6.178 4 C -0.041 4.041 5 C -0.188 4.188 6 C -0.229 4.229 7 C 0.584 3.416 8 O -0.540 6.540 9 N -0.597 5.597 10 C 0.101 3.899 11 C -0.129 4.129 12 C -0.126 4.126 13 C 0.169 3.831 14 H 0.050 0.950 15 N -0.718 5.718 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.093 3.907 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.207 0.793 29 H 0.157 0.843 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.061 0.939 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.739 20.371 -1.813 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.005 3.995 3 O -0.075 6.075 4 C -0.107 4.107 5 C -0.207 4.207 6 C -0.233 4.233 7 C 0.372 3.628 8 O -0.419 6.419 9 N -0.329 5.329 10 C -0.022 4.022 11 C -0.168 4.168 12 C -0.165 4.165 13 C 0.058 3.942 14 H 0.068 0.932 15 N -0.359 5.359 16 C -0.375 4.375 17 H 0.089 0.911 18 C -0.206 4.206 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.031 4.031 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.223 0.777 29 H 0.174 0.826 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.995 20.368 -2.252 21.996 hybrid contribution -0.274 -0.794 -0.111 0.847 sum 7.721 19.573 -2.363 21.174 Atomic orbital electron populations 1.20547 0.84113 1.05243 1.04180 1.22635 0.93921 0.82984 0.99921 1.83740 1.17022 1.34951 1.71741 1.23814 0.83645 0.96252 1.06988 1.22852 0.96515 0.94309 1.07026 1.21213 0.93514 0.94180 1.14427 1.17328 0.81143 0.83754 0.80569 1.90788 1.33464 1.78523 1.39076 1.48155 1.36349 1.12336 1.36082 1.21940 0.89594 1.00845 0.89795 1.21877 1.01526 0.97747 0.95650 1.21832 0.99076 0.94625 1.00927 1.20487 0.94692 0.87994 0.91065 0.93162 1.42372 1.10800 1.01868 1.80828 1.19227 0.87585 0.92202 1.38437 0.91102 1.24737 0.97890 0.95918 1.02042 1.69653 1.33027 1.01844 1.53546 0.86267 0.84300 0.77376 0.78275 1.21094 1.21669 1.21201 1.22810 1.00188 0.78488 1.01636 0.89527 0.90090 0.87762 0.77688 0.82556 0.89367 0.91614 0.91705 0.91105 0.92050 0.91425 0.78057 0.93412 0.92023 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.24 36.01 0.37 -0.53 16 2 C 0.06 0.72 7.37 -34.96 -0.26 0.46 16 3 O -0.18 -1.96 10.52 7.64 0.08 -1.88 16 4 C -0.04 -0.36 12.03 29.30 0.35 0.00 16 5 C -0.19 -1.96 8.77 -37.45 -0.33 -2.28 16 6 C -0.23 -3.17 5.26 -103.28 -0.54 -3.71 16 7 C 0.58 10.07 7.36 -12.54 -0.09 9.98 16 8 O -0.54 -11.26 15.50 5.26 0.08 -11.18 16 9 N -0.60 -9.71 2.97 -174.00 -0.52 -10.23 16 10 C 0.10 1.26 5.99 -3.67 -0.02 1.23 16 11 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 12 C -0.13 -2.02 5.35 -26.68 -0.14 -2.16 16 13 C 0.17 3.39 2.92 -67.81 -0.20 3.20 16 14 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 15 N -0.72 -17.97 5.13 -53.31 -0.27 -18.24 16 16 C -0.24 -6.82 9.93 -15.06 -0.15 -6.97 16 17 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 20 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.09 1.81 6.01 -3.71 -0.02 1.79 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 1.32 7.03 -51.93 -0.37 0.95 16 28 H 0.21 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.16 1.32 7.74 -52.49 -0.41 0.92 16 30 H 0.09 0.95 4.51 -51.93 -0.23 0.71 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 39 H 0.09 2.05 7.03 -51.93 -0.36 1.69 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -33.33 322.40 -6.82 -40.15 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.46 Total: 7.40 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.29 Total: -1.16 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.07 Total: -55.86 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.16 Total: -13.06 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.33 -6.82 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998483816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.241 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds