Wall clock time and date at job start Tue Mar 31 2020 00:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33657 * 125.80094 * 2 1 4 4 C 1.34216 * 110.90739 * 180.26722 * 3 2 1 5 5 C 1.34176 * 109.12314 * 359.76493 * 4 3 2 6 6 C 1.36419 * 125.80157 * 179.86165 * 2 1 3 7 7 C 1.47369 * 127.19299 * 0.02562 * 6 2 1 8 8 O 1.21616 * 120.00523 * 48.71169 * 7 6 2 9 9 N 1.34781 * 120.00146 * 228.71446 * 7 6 2 10 10 C 1.46989 * 120.61014 * 355.72045 * 9 7 6 11 11 C 1.53197 * 108.74154 * 126.38649 * 10 9 7 12 12 C 1.53047 * 109.33650 * 54.61907 * 11 10 9 13 13 C 1.53044 * 109.53823 * 298.62134 * 12 11 10 14 14 H 1.08997 * 109.49935 * 301.41547 * 13 12 11 15 15 N 1.46502 * 109.49790 * 181.34688 * 13 12 11 16 16 C 1.36938 * 119.99843 * 154.99817 * 15 13 12 17 17 H 1.08000 * 119.99624 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99755 * 180.02562 * 16 15 13 19 19 N 1.31623 * 120.00191 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47145 * 59.99404 * 20 18 16 22 22 H 1.48496 * 109.47345 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47073 * 300.00071 * 20 18 16 24 24 C 1.46924 * 120.63023 * 175.69300 * 9 7 6 25 25 H 1.09003 * 109.47228 * 270.13453 * 1 2 3 26 26 H 1.09001 * 109.47310 * 30.13735 * 1 2 3 27 27 H 1.09004 * 109.46904 * 150.13633 * 1 2 3 28 28 H 1.07998 * 125.43756 * 179.76137 * 4 3 2 29 29 H 1.08002 * 127.02212 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.63584 * 6.59278 * 10 9 7 31 31 H 1.09004 * 109.58045 * 246.14738 * 10 9 7 32 32 H 1.08992 * 109.49532 * 294.65697 * 11 10 9 33 33 H 1.08994 * 109.50202 * 174.58376 * 11 10 9 34 34 H 1.09001 * 109.46020 * 58.63749 * 12 11 10 35 35 H 1.09002 * 109.45877 * 178.60061 * 12 11 10 36 36 H 0.97002 * 119.99820 * 335.00792 * 15 13 12 37 37 H 0.96997 * 119.99473 * 179.97438 * 19 18 16 38 38 H 1.09009 * 109.58184 * 113.84806 * 24 9 7 39 39 H 1.08994 * 109.58886 * 353.42634 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7391 -0.0058 5 6 3.6849 -0.5990 -0.0047 6 6 2.3050 -1.1064 0.0027 7 6 1.8740 -2.5157 0.0055 8 8 1.0319 -2.8957 -0.7853 9 7 2.4131 -3.3835 0.8847 10 6 3.4976 -2.9622 1.7830 11 6 3.0974 -3.2895 3.2251 12 6 2.7372 -4.7735 3.3267 13 6 1.5452 -5.0744 2.4151 14 1 0.6981 -4.4538 2.7071 15 7 1.1808 -6.4881 2.5373 16 6 -0.0972 -6.8924 2.2572 17 1 -0.8363 -6.1691 1.9458 18 6 -0.4426 -8.2317 2.3735 19 7 0.4584 -9.1132 2.7526 20 14 -2.1857 -8.7834 1.9907 21 1 -2.5122 -8.4498 0.5809 22 1 -2.2955 -10.2509 2.1898 23 1 -3.1352 -8.0881 2.8965 24 6 1.9273 -4.7679 0.9636 25 1 -0.3634 0.0024 1.0277 26 1 -0.3634 0.8887 -0.5160 27 1 -0.3633 -0.8912 -0.5117 28 1 4.4172 1.4285 -0.0108 29 1 4.5928 -1.1840 -0.0087 30 1 3.6597 -1.8890 1.6834 31 1 4.4123 -3.4972 1.5272 32 1 2.2357 -2.6857 3.5094 33 1 3.9310 -3.0711 3.8925 34 1 3.5913 -5.3765 3.0184 35 1 2.4761 -5.0140 4.3572 36 1 1.8448 -7.1377 2.8169 37 1 0.2168 -10.0491 2.8342 38 1 2.7141 -5.4500 0.6410 39 1 1.0535 -4.8856 0.3230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998483816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:32 Heat of formation + Delta-G solvation = -31.490455 kcal Electronic energy + Delta-G solvation = -21931.348158 eV Core-core repulsion = 18646.938377 eV Total energy + Delta-G solvation = -3284.409781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -43.53398 -40.99790 -38.67361 -36.25057 -34.34470 -33.61750 -32.81276 -32.75357 -30.07630 -28.10668 -26.48546 -25.90147 -23.77534 -23.32846 -22.22613 -21.26060 -19.78533 -19.13892 -18.56779 -17.57514 -17.13842 -16.78294 -16.63961 -16.13510 -15.55464 -15.45900 -15.33702 -15.08091 -14.51284 -14.17954 -14.03653 -13.90713 -13.85465 -13.70931 -13.58677 -13.09736 -12.89026 -12.71606 -12.51636 -12.26464 -12.04506 -11.92645 -11.69889 -11.37661 -11.22309 -11.04333 -10.57853 -9.79987 -9.49024 -9.03707 -7.99395 -5.29053 0.48169 1.18492 1.43948 1.47006 1.53092 1.72575 1.92190 2.17583 2.53223 3.33619 3.53771 3.66665 3.74956 3.97712 4.01807 4.06580 4.20472 4.30940 4.33460 4.35959 4.55136 4.59133 4.62821 4.69321 4.76232 4.85406 4.87652 4.89692 5.02824 5.10916 5.17536 5.35921 5.39821 5.42220 5.44556 5.56443 6.08156 6.23007 6.42159 7.09773 7.29782 8.01197 8.27101 9.23097 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025240 B = 0.004415 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.075617 B = 6340.227688 C = 7043.214046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.052 3.948 3 O -0.178 6.178 4 C -0.018 4.018 5 C -0.200 4.200 6 C -0.258 4.258 7 C 0.579 3.421 8 O -0.591 6.591 9 N -0.596 5.596 10 C 0.098 3.902 11 C -0.120 4.120 12 C -0.118 4.118 13 C 0.168 3.832 14 H 0.032 0.968 15 N -0.729 5.729 16 C -0.249 4.249 17 H 0.065 0.935 18 C -0.066 4.066 19 N -0.964 5.964 20 Si 0.968 3.032 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.276 1.276 24 C 0.108 3.892 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.255 0.745 29 H 0.177 0.823 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.378 0.622 37 H 0.253 0.747 38 H 0.059 0.941 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.550 23.096 -1.221 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.000 4.000 3 O -0.074 6.074 4 C -0.083 4.083 5 C -0.219 4.219 6 C -0.262 4.262 7 C 0.369 3.631 8 O -0.473 6.473 9 N -0.327 5.327 10 C -0.023 4.023 11 C -0.158 4.158 12 C -0.156 4.156 13 C 0.059 3.941 14 H 0.050 0.950 15 N -0.369 5.369 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.258 4.258 19 N -0.614 5.614 20 Si 0.797 3.203 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.202 1.202 24 C -0.017 4.017 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.095 0.905 28 H 0.271 0.729 29 H 0.195 0.805 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.210 0.790 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.839 23.155 -1.641 25.213 hybrid contribution -0.784 -1.531 -0.321 1.750 sum 9.055 21.624 -1.963 23.526 Atomic orbital electron populations 1.20546 0.83727 1.05037 1.04841 1.22792 0.94549 0.83159 0.99549 1.83778 1.18058 1.34171 1.71438 1.24748 0.83468 0.96495 1.03601 1.23071 0.95385 0.95209 1.08208 1.21087 0.96037 0.92156 1.16926 1.17909 0.80219 0.85253 0.79715 1.90752 1.35751 1.79677 1.41137 1.48183 1.37096 1.10751 1.36677 1.22280 0.88685 1.02691 0.88679 1.21862 1.02879 0.94531 0.96548 1.21745 0.97024 0.97588 0.99264 1.20633 0.96029 0.85131 0.92343 0.95000 1.42503 1.09734 1.03761 1.80915 1.19490 0.88801 0.92349 1.37395 0.91662 1.25479 1.01587 0.96045 1.02728 1.69786 1.34698 1.01811 1.55066 0.85300 0.80182 0.76820 0.78012 1.20996 1.21506 1.20245 1.22262 0.98556 0.80866 1.00066 0.88442 0.87659 0.90531 0.72898 0.80525 0.86825 0.89658 0.92186 0.87054 0.91376 0.91854 0.78957 0.93776 0.92317 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 10.24 71.24 0.73 -1.06 16 2 C 0.05 1.23 7.37 25.26 0.19 1.41 16 3 O -0.18 -3.35 10.52 4.41 0.05 -3.30 16 4 C -0.02 -0.23 12.03 66.89 0.80 0.57 16 5 C -0.20 -3.47 8.77 23.65 0.21 -3.26 16 6 C -0.26 -6.83 5.26 -18.99 -0.10 -6.93 16 7 C 0.58 20.36 7.36 86.65 0.64 21.00 16 8 O -0.59 -26.17 15.50 -4.08 -0.06 -26.23 16 9 N -0.60 -19.36 2.97 -822.65 -2.45 -21.81 16 10 C 0.10 2.15 5.99 86.35 0.52 2.67 16 11 C -0.12 -2.65 6.08 30.68 0.19 -2.46 16 12 C -0.12 -3.64 5.35 30.62 0.16 -3.47 16 13 C 0.17 6.95 2.92 45.07 0.13 7.09 16 14 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 15 N -0.73 -37.71 5.13 -322.57 -1.65 -39.37 16 16 C -0.25 -14.38 9.93 84.03 0.83 -13.55 16 17 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.96 -59.33 13.06 21.65 0.28 -59.05 16 20 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 21 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 24 C 0.11 4.38 6.01 86.36 0.52 4.90 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 2.06 7.03 -2.39 -0.02 2.04 16 28 H 0.26 0.56 8.06 -2.91 -0.02 0.53 16 29 H 0.18 2.24 7.74 -2.91 -0.02 2.22 16 30 H 0.11 2.01 4.51 -2.39 -0.01 2.00 16 31 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.38 20.44 7.80 -92.71 -0.72 19.72 16 37 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.05 2.39 7.03 -2.39 -0.02 2.37 16 Total: -1.00 -76.45 322.40 3.82 -72.63 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.34 Total: 23.97 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.28 Total: 3.53 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -3.82 Total: -120.22 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.02 Total: -29.53 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -76.45 3.82 -72.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998483816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.137 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds