Wall clock time and date at job start Tue Mar 31 2020 00:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35136 * 125.61526 * 2 1 4 4 C 1.40358 * 107.11364 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.71137 * 359.97438 * 4 3 2 6 6 C 1.46664 * 125.98977 * 179.97438 * 5 4 3 7 7 O 1.21697 * 119.99788 * 352.39220 * 6 5 4 8 8 N 1.34779 * 119.99838 * 172.38973 * 6 5 4 9 9 C 1.46930 * 120.60177 * 352.62090 * 8 6 5 10 10 C 1.53193 * 108.76869 * 233.57342 * 9 8 6 11 11 C 1.53033 * 109.34515 * 305.41896 * 10 9 8 12 12 C 1.53044 * 109.53633 * 61.34821 * 11 10 9 13 13 H 1.09006 * 109.49694 * 58.58470 * 12 11 10 14 14 N 1.46494 * 109.49789 * 178.64987 * 12 11 10 15 15 C 1.36940 * 120.00107 * 205.00170 * 14 12 11 16 16 H 1.08004 * 119.99824 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00230 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99801 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00257 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47130 * 89.99361 * 19 17 15 21 21 H 1.48497 * 109.46989 * 209.99933 * 19 17 15 22 22 H 1.48500 * 109.46501 * 329.99616 * 19 17 15 23 23 C 1.46918 * 120.62801 * 172.64813 * 8 6 5 24 24 O 1.33934 * 125.61863 * 180.29676 * 2 1 3 25 25 H 1.08993 * 109.47348 * 89.99768 * 1 2 3 26 26 H 1.08998 * 109.46884 * 209.99957 * 1 2 3 27 27 H 1.08996 * 109.46943 * 329.99370 * 1 2 3 28 28 H 1.08000 * 126.43947 * 0.02731 * 3 2 1 29 29 H 1.07999 * 126.64838 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.55661 * 113.81372 * 9 8 6 31 31 H 1.08990 * 109.62085 * 353.38362 * 9 8 6 32 32 H 1.09007 * 109.49660 * 185.44866 * 10 9 8 33 33 H 1.09003 * 109.49426 * 65.39709 * 10 9 8 34 34 H 1.09003 * 109.46299 * 181.36993 * 11 10 9 35 35 H 1.09001 * 109.46296 * 301.32922 * 11 10 9 36 36 H 0.97000 * 120.00193 * 25.00024 * 14 12 11 37 37 H 0.96995 * 119.99895 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.59180 * 6.60058 * 23 8 6 39 39 H 1.09003 * 109.70371 * 246.24811 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5823 -0.7116 -0.0004 6 6 4.7415 -1.6101 -0.0013 7 8 5.8623 -1.1572 -0.1420 8 7 4.5655 -2.9373 0.1536 9 6 3.2419 -3.4827 0.4848 10 6 3.3692 -4.3614 1.7332 11 6 4.4463 -5.4228 1.4983 12 6 5.7928 -4.7393 1.2495 13 1 6.0488 -4.1169 2.1070 14 7 6.8293 -5.7564 1.0567 15 6 8.1389 -5.4588 1.3242 16 1 8.4077 -4.4739 1.6769 17 6 9.1211 -6.4224 1.1411 18 7 8.7936 -7.6224 0.7108 19 14 10.9075 -6.0165 1.5066 20 1 11.2076 -6.3367 2.9253 21 1 11.7887 -6.8191 0.6208 22 1 11.1462 -4.5710 1.2642 23 6 5.6932 -3.8655 -0.0048 24 8 2.2870 -1.0888 -0.0056 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9612 2.1260 0.0004 29 1 4.5113 1.2703 -0.0004 30 1 2.8755 -4.0824 -0.3483 31 1 2.5483 -2.6655 0.6823 32 1 2.4152 -4.8493 1.9334 33 1 3.6476 -3.7430 2.5865 34 1 4.5215 -6.0645 2.3763 35 1 4.1791 -6.0255 0.6302 36 1 6.5880 -6.6408 0.7397 37 1 9.4799 -8.2958 0.5831 38 1 6.6168 -3.3004 -0.1307 39 1 5.5295 -4.4971 -0.8781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998490026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:37 Heat of formation + Delta-G solvation = -3.320176 kcal Electronic energy + Delta-G solvation = -21779.868439 eV Core-core repulsion = 18496.680212 eV Total energy + Delta-G solvation = -3283.188226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.88004 -39.67217 -37.32765 -34.56688 -33.45132 -32.35116 -32.05965 -31.17162 -28.62470 -27.31404 -25.04857 -23.98624 -22.14963 -21.96132 -21.43323 -20.34734 -19.38154 -17.39507 -17.07700 -16.69543 -16.09433 -15.48316 -14.97132 -14.54436 -14.20137 -14.06387 -13.65880 -13.50454 -13.43662 -13.30270 -13.22529 -13.03862 -12.71070 -12.38235 -12.24962 -12.13873 -11.31100 -10.98571 -10.83084 -10.62312 -10.53906 -10.19659 -10.12807 -10.03841 -9.82621 -9.64515 -9.08169 -8.68483 -8.31718 -6.99786 -5.77975 -3.07895 1.00285 2.20509 2.46642 3.17015 3.31716 3.46067 3.51413 3.54177 4.35536 4.58617 4.62886 4.75861 4.95960 5.05836 5.08586 5.13845 5.27860 5.31844 5.46030 5.50104 5.58223 5.64854 5.68934 5.79763 5.90750 6.00323 6.07491 6.16717 6.21388 6.24469 6.35569 6.46570 6.67865 6.79718 6.83841 7.00181 7.56926 7.73124 8.22354 8.40276 9.52102 10.05637 10.41206 11.44279 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031190 B = 0.004027 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.498485 B = 6952.008782 C = 7658.049756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.002 3.998 3 C -0.221 4.221 4 C -0.124 4.124 5 C -0.068 4.068 6 C 0.593 3.407 7 O -0.521 6.521 8 N -0.595 5.595 9 C 0.097 3.903 10 C -0.128 4.128 11 C -0.126 4.126 12 C 0.168 3.832 13 H 0.052 0.948 14 N -0.718 5.718 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.092 3.908 24 O -0.155 6.155 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.093 0.907 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.244 13.536 -0.831 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 C -0.240 4.240 4 C -0.144 4.144 5 C -0.120 4.120 6 C 0.380 3.620 7 O -0.400 6.400 8 N -0.328 5.328 9 C -0.025 4.025 10 C -0.167 4.167 11 C -0.165 4.165 12 C 0.057 3.943 13 H 0.070 0.930 14 N -0.358 5.358 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.032 4.032 24 O -0.052 6.052 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.171 0.829 29 H 0.177 0.823 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.526 13.474 -0.860 23.739 hybrid contribution 0.960 0.047 -0.007 0.961 sum -18.567 13.520 -0.867 22.984 Atomic orbital electron populations 1.20384 0.84795 1.04349 1.03803 1.22923 0.94400 0.84767 1.02863 1.21553 0.92390 0.99642 1.10456 1.21933 0.98567 0.93020 1.00917 1.22261 0.81766 0.94712 1.13250 1.16763 0.85894 0.81471 0.77827 1.90885 1.22454 1.75434 1.51189 1.48194 1.11335 1.05436 1.67796 1.22132 0.84043 0.98614 0.97747 1.21879 0.99587 0.97808 0.97447 1.21838 0.94904 0.97571 1.02171 1.20490 0.88408 0.90870 0.94524 0.92992 1.42376 1.02814 1.11175 1.79453 1.19292 0.83500 0.97385 1.37244 0.90977 1.24749 0.98146 0.95896 1.01867 1.69662 1.32557 1.03616 1.52215 0.86183 0.84894 0.77561 0.77581 1.21667 1.21734 1.20550 1.22888 0.88237 0.91250 1.00853 1.84214 1.16253 1.33843 1.70925 0.89750 0.90206 0.89153 0.82915 0.82346 0.91324 0.88463 0.90897 0.91633 0.91299 0.91973 0.78038 0.93461 0.88891 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.41 36.01 0.37 -0.02 16 2 C 0.00 0.02 7.31 -35.41 -0.26 -0.24 16 3 C -0.22 -2.20 10.77 -39.89 -0.43 -2.63 16 4 C -0.12 -1.58 10.63 -39.40 -0.42 -2.00 16 5 C -0.07 -0.99 6.76 -36.79 -0.25 -1.24 16 6 C 0.59 10.47 7.65 -12.86 -0.10 10.37 16 7 O -0.52 -10.96 16.30 5.19 0.08 -10.88 16 8 N -0.60 -9.94 2.97 -174.32 -0.52 -10.46 16 9 C 0.10 1.27 6.10 -3.71 -0.02 1.25 16 10 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 11 C -0.13 -2.04 5.36 -26.69 -0.14 -2.18 16 12 C 0.17 3.42 2.92 -67.81 -0.20 3.22 16 13 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 14 N -0.72 -18.01 5.12 -53.31 -0.27 -18.29 16 15 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 16 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 19 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.09 1.79 6.03 -3.72 -0.02 1.77 16 24 O -0.16 -1.89 7.27 5.00 0.04 -1.85 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.16 1.92 8.06 -52.49 -0.42 1.49 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.17 4.26 -52.94 -0.23 0.94 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.39 10.13 7.80 -40.82 -0.32 9.81 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.09 2.09 7.00 -51.93 -0.36 1.73 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -32.85 323.71 -7.49 -40.34 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.52 Total: 6.83 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.87 Total: -0.91 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.07 Total: -56.19 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.12 Total: -12.73 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.85 -7.49 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998490026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.015 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds