Wall clock time and date at job start Tue Mar 31 2020 00:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35136 * 125.61526 * 2 1 4 4 C 1.40358 * 107.11364 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.71137 * 359.97438 * 4 3 2 6 6 C 1.46664 * 125.98977 * 179.97438 * 5 4 3 7 7 O 1.21697 * 119.99788 * 352.39220 * 6 5 4 8 8 N 1.34779 * 119.99838 * 172.38973 * 6 5 4 9 9 C 1.46930 * 120.60177 * 352.62090 * 8 6 5 10 10 C 1.53193 * 108.76869 * 233.57342 * 9 8 6 11 11 C 1.53033 * 109.34515 * 305.41896 * 10 9 8 12 12 C 1.53044 * 109.53633 * 61.34821 * 11 10 9 13 13 H 1.09006 * 109.49694 * 58.58470 * 12 11 10 14 14 N 1.46494 * 109.49789 * 178.64987 * 12 11 10 15 15 C 1.36940 * 120.00107 * 205.00170 * 14 12 11 16 16 H 1.08004 * 119.99824 * 359.97438 * 15 14 12 17 17 C 1.38812 * 120.00230 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99801 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00257 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47130 * 89.99361 * 19 17 15 21 21 H 1.48497 * 109.46989 * 209.99933 * 19 17 15 22 22 H 1.48500 * 109.46501 * 329.99616 * 19 17 15 23 23 C 1.46918 * 120.62801 * 172.64813 * 8 6 5 24 24 O 1.33934 * 125.61863 * 180.29676 * 2 1 3 25 25 H 1.08993 * 109.47348 * 89.99768 * 1 2 3 26 26 H 1.08998 * 109.46884 * 209.99957 * 1 2 3 27 27 H 1.08996 * 109.46943 * 329.99370 * 1 2 3 28 28 H 1.08000 * 126.43947 * 0.02731 * 3 2 1 29 29 H 1.07999 * 126.64838 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.55661 * 113.81372 * 9 8 6 31 31 H 1.08990 * 109.62085 * 353.38362 * 9 8 6 32 32 H 1.09007 * 109.49660 * 185.44866 * 10 9 8 33 33 H 1.09003 * 109.49426 * 65.39709 * 10 9 8 34 34 H 1.09003 * 109.46299 * 181.36993 * 11 10 9 35 35 H 1.09001 * 109.46296 * 301.32922 * 11 10 9 36 36 H 0.97000 * 120.00193 * 25.00024 * 14 12 11 37 37 H 0.96995 * 119.99895 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.59180 * 6.60058 * 23 8 6 39 39 H 1.09003 * 109.70371 * 246.24811 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5823 -0.7116 -0.0004 6 6 4.7415 -1.6101 -0.0013 7 8 5.8623 -1.1572 -0.1420 8 7 4.5655 -2.9373 0.1536 9 6 3.2419 -3.4827 0.4848 10 6 3.3692 -4.3614 1.7332 11 6 4.4463 -5.4228 1.4983 12 6 5.7928 -4.7393 1.2495 13 1 6.0488 -4.1169 2.1070 14 7 6.8293 -5.7564 1.0567 15 6 8.1389 -5.4588 1.3242 16 1 8.4077 -4.4739 1.6769 17 6 9.1211 -6.4224 1.1411 18 7 8.7936 -7.6224 0.7108 19 14 10.9075 -6.0165 1.5066 20 1 11.2076 -6.3367 2.9253 21 1 11.7887 -6.8191 0.6208 22 1 11.1462 -4.5710 1.2642 23 6 5.6932 -3.8655 -0.0048 24 8 2.2870 -1.0888 -0.0056 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9612 2.1260 0.0004 29 1 4.5113 1.2703 -0.0004 30 1 2.8755 -4.0824 -0.3483 31 1 2.5483 -2.6655 0.6823 32 1 2.4152 -4.8493 1.9334 33 1 3.6476 -3.7430 2.5865 34 1 4.5215 -6.0645 2.3763 35 1 4.1791 -6.0255 0.6302 36 1 6.5880 -6.6408 0.7397 37 1 9.4799 -8.2958 0.5831 38 1 6.6168 -3.3004 -0.1307 39 1 5.5295 -4.4971 -0.8781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998490026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:36 Heat of formation + Delta-G solvation = -25.118059 kcal Electronic energy + Delta-G solvation = -21780.813666 eV Core-core repulsion = 18496.680212 eV Total energy + Delta-G solvation = -3284.133453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.78961 -41.03673 -38.79274 -36.31341 -34.43628 -33.86530 -32.89643 -32.79742 -30.26600 -28.36698 -26.24811 -25.91788 -23.40953 -23.17523 -22.44180 -21.55805 -20.70672 -19.18817 -18.59058 -17.67320 -17.40610 -16.69746 -16.48796 -16.09392 -15.56908 -15.47480 -15.23465 -15.07871 -14.33958 -14.14951 -14.07333 -14.00432 -13.92445 -13.65760 -13.60736 -13.08638 -12.90279 -12.75510 -12.54890 -12.23025 -11.98669 -11.95137 -11.72532 -11.40630 -11.35140 -11.10404 -11.00866 -9.94435 -9.44574 -9.04544 -8.00283 -5.29963 -0.02292 1.34795 1.43226 1.44939 1.47320 1.54537 1.95422 2.09948 2.52355 3.32211 3.40766 3.70497 3.84854 3.91225 3.96425 4.00973 4.18043 4.28609 4.32386 4.47045 4.56808 4.64940 4.67544 4.74308 4.78723 4.81777 4.91258 4.93778 5.03695 5.07409 5.17399 5.32286 5.39378 5.40568 5.48240 5.54514 5.87708 6.22278 6.28840 6.88787 7.29176 7.99858 8.26400 9.22293 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031190 B = 0.004027 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.498485 B = 6952.008782 C = 7658.049756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.022 3.978 3 C -0.229 4.229 4 C -0.120 4.120 5 C -0.105 4.105 6 C 0.588 3.412 7 O -0.573 6.573 8 N -0.596 5.596 9 C 0.095 3.905 10 C -0.118 4.118 11 C -0.118 4.118 12 C 0.167 3.833 13 H 0.031 0.969 14 N -0.728 5.728 15 C -0.248 4.248 16 H 0.065 0.935 17 C -0.066 4.066 18 N -0.963 5.963 19 Si 0.969 3.031 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.106 3.894 24 O -0.159 6.159 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.185 0.815 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.379 0.621 37 H 0.254 0.746 38 H 0.053 0.947 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.547 14.764 -0.527 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.030 4.030 3 C -0.247 4.247 4 C -0.141 4.141 5 C -0.156 4.156 6 C 0.378 3.622 7 O -0.455 6.455 8 N -0.327 5.327 9 C -0.026 4.026 10 C -0.157 4.157 11 C -0.156 4.156 12 C 0.057 3.943 13 H 0.049 0.951 14 N -0.368 5.368 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.259 4.259 18 N -0.613 5.613 19 Si 0.798 3.202 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.019 4.019 24 O -0.056 6.056 25 H 0.120 0.880 26 H 0.109 0.891 27 H 0.133 0.867 28 H 0.202 0.798 29 H 0.173 0.827 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.211 0.789 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.892 14.723 -0.541 27.223 hybrid contribution 1.813 -0.209 -0.109 1.828 sum -21.079 14.514 -0.650 25.601 Atomic orbital electron populations 1.20684 0.81115 1.06163 1.05389 1.23900 0.96138 0.83797 0.99189 1.21907 0.90761 1.01459 1.10608 1.22197 1.00159 0.92540 0.99201 1.21552 0.81986 0.94376 1.17678 1.17185 0.86442 0.81818 0.76785 1.90839 1.24741 1.76376 1.53572 1.48212 1.11840 1.05027 1.67647 1.22421 0.82264 0.99437 0.98473 1.21863 1.00100 0.96709 0.97014 1.21745 0.93193 0.98283 1.02370 1.20637 0.89670 0.90121 0.93826 0.95053 1.42486 1.02893 1.11852 1.79562 1.19526 0.85186 0.96968 1.36316 0.91713 1.25488 1.01926 0.95949 1.02529 1.69789 1.33480 1.04350 1.53667 0.85216 0.80279 0.77271 0.77472 1.20964 1.21623 1.20256 1.22360 0.88160 0.91082 1.00299 1.84144 1.15297 1.34961 1.71219 0.88040 0.89065 0.86683 0.79790 0.82703 0.89620 0.86678 0.86763 0.92170 0.91590 0.91145 0.78863 0.93750 0.92813 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.41 71.24 0.74 0.33 16 2 C 0.02 0.34 7.31 24.97 0.18 0.52 16 3 C -0.23 -3.85 10.77 22.07 0.24 -3.61 16 4 C -0.12 -2.97 10.63 22.39 0.24 -2.73 16 5 C -0.10 -2.99 6.76 24.08 0.16 -2.83 16 6 C 0.59 21.49 7.65 86.44 0.66 22.15 16 7 O -0.57 -25.74 16.30 -4.34 -0.07 -25.81 16 8 N -0.60 -20.21 2.97 -823.64 -2.45 -22.66 16 9 C 0.09 2.29 6.10 86.36 0.53 2.81 16 10 C -0.12 -2.75 6.08 30.67 0.19 -2.56 16 11 C -0.12 -3.69 5.36 30.62 0.16 -3.52 16 12 C 0.17 7.01 2.92 45.07 0.13 7.14 16 13 H 0.03 1.43 8.08 -2.38 -0.02 1.41 16 14 N -0.73 -37.81 5.12 -322.57 -1.65 -39.46 16 15 C -0.25 -14.45 9.93 84.03 0.83 -13.62 16 16 H 0.06 3.78 7.83 -2.91 -0.02 3.76 16 17 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 18 N -0.96 -59.37 13.06 21.65 0.28 -59.09 16 19 Si 0.97 47.92 29.55 68.60 2.03 49.95 16 20 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 23 C 0.11 4.34 6.03 86.36 0.52 4.86 16 24 O -0.16 -3.47 7.27 -5.04 -0.04 -3.51 16 25 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.11 0.13 8.14 -2.39 -0.02 0.12 16 28 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.12 2.45 4.26 -18.34 -0.08 2.37 16 32 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.38 20.48 7.80 -92.71 -0.72 19.76 16 37 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.05 2.60 7.00 -2.38 -0.02 2.58 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -75.15 323.71 3.42 -71.72 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.27 Total: 23.35 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 5.05 Total: 5.51 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -3.82 Total: -121.21 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.11 Total: -29.32 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -75.15 3.42 -71.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998490026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.606 kcal (2) G-P(sol) polarization free energy of solvation -75.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds