Wall clock time and date at job start Tue Mar 31 2020 00:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35137 * 125.61526 * 2 1 4 4 C 1.40365 * 107.11567 * 179.72550 * 3 2 1 5 5 C 1.36542 * 106.70704 * 0.23684 * 4 3 2 6 6 C 1.46657 * 125.99039 * 179.97438 * 5 4 3 7 7 O 1.21695 * 119.99334 * 7.55169 * 6 5 4 8 8 N 1.34774 * 120.00533 * 187.54890 * 6 5 4 9 9 C 1.46921 * 120.62730 * 7.38742 * 8 6 5 10 10 C 1.53195 * 108.77692 * 126.37014 * 9 8 6 11 11 C 1.53038 * 109.31071 * 54.63240 * 10 9 8 12 12 C 1.53049 * 109.53917 * 298.63679 * 11 10 9 13 13 H 1.08991 * 109.49476 * 301.38130 * 12 11 10 14 14 N 1.46505 * 109.49694 * 181.31450 * 12 11 10 15 15 C 1.36936 * 119.99573 * 155.00047 * 14 12 11 16 16 H 1.08001 * 120.00112 * 0.02562 * 15 14 12 17 17 C 1.38810 * 119.99882 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99809 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00165 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47053 * 89.99921 * 19 17 15 21 21 H 1.48495 * 109.47236 * 210.00175 * 19 17 15 22 22 H 1.48498 * 109.47001 * 329.99929 * 19 17 15 23 23 C 1.46921 * 120.63201 * 187.11090 * 8 6 5 24 24 O 1.33933 * 125.61963 * 180.13670 * 2 1 3 25 25 H 1.09001 * 109.47005 * 90.00295 * 1 2 3 26 26 H 1.09000 * 109.46667 * 210.00119 * 1 2 3 27 27 H 1.08994 * 109.47367 * 330.00499 * 1 2 3 28 28 H 1.07998 * 126.44088 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.64775 * 180.26810 * 4 3 2 30 30 H 1.09002 * 109.58968 * 246.15568 * 9 8 6 31 31 H 1.09000 * 109.59272 * 6.43759 * 9 8 6 32 32 H 1.08996 * 109.49670 * 174.58293 * 10 9 8 33 33 H 1.09001 * 109.49585 * 294.68265 * 10 9 8 34 34 H 1.09000 * 109.46081 * 58.65814 * 11 10 9 35 35 H 1.09000 * 109.46035 * 178.61806 * 11 10 9 36 36 H 0.96998 * 119.99800 * 335.00620 * 14 12 11 37 37 H 0.97006 * 119.99890 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.58619 * 353.41687 * 23 8 6 39 39 H 1.08998 * 109.59229 * 113.84352 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6532 0.0064 5 6 3.5824 -0.7115 0.0047 6 6 4.7415 -1.6100 0.0092 7 8 5.8618 -1.1571 0.1535 8 7 4.5660 -2.9372 -0.1465 9 6 3.2440 -3.4832 -0.4821 10 6 3.3754 -4.3608 -1.7309 11 6 4.4517 -5.4222 -1.4926 12 6 5.7974 -4.7387 -1.2387 13 1 6.0566 -4.1165 -2.0952 14 7 6.8331 -5.7559 -1.0418 15 6 8.1437 -5.4583 -1.3042 16 1 8.4138 -4.4736 -1.6560 17 6 9.1250 -6.4223 -1.1182 18 7 8.7957 -7.6225 -0.6900 19 14 10.9128 -6.0165 -1.4769 20 1 11.5550 -5.4822 -0.2492 21 1 11.6221 -7.2467 -1.9112 22 1 10.9825 -4.9981 -2.5554 23 6 5.6945 -3.8650 0.0102 24 8 2.2871 -1.0887 -0.0026 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9613 2.1260 -0.0004 29 1 4.5113 1.2704 0.0122 30 1 2.8748 -4.0837 0.3493 31 1 2.5501 -2.6658 -0.6787 32 1 2.4222 -4.8486 -1.9347 33 1 3.6572 -3.7416 -2.5826 34 1 4.1815 -6.0252 -0.6257 35 1 4.5301 -6.0634 -2.3705 36 1 6.5904 -6.6402 -0.7256 37 1 9.4815 -8.2960 -0.5596 38 1 6.6177 -3.2994 0.1358 39 1 5.5293 -4.4973 0.8825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998490028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:41 Heat of formation + Delta-G solvation = -3.126210 kcal Electronic energy + Delta-G solvation = -21780.655803 eV Core-core repulsion = 18497.475988 eV Total energy + Delta-G solvation = -3283.179815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.87979 -39.68061 -37.33840 -34.57244 -33.45154 -32.35189 -32.05967 -31.18044 -28.63001 -27.31574 -25.05471 -23.98648 -22.15457 -21.96319 -21.43479 -20.35192 -19.37879 -17.39484 -17.07872 -16.69254 -16.09893 -15.48654 -14.97156 -14.54413 -14.20224 -14.07736 -13.65975 -13.51194 -13.42778 -13.28739 -13.22591 -13.05871 -12.70574 -12.38854 -12.25158 -12.14059 -11.30725 -10.98958 -10.82865 -10.61520 -10.54413 -10.19941 -10.12890 -10.04078 -9.82524 -9.64561 -9.08172 -8.68579 -8.31853 -7.00003 -5.78028 -3.07949 1.00281 2.20354 2.46533 3.16831 3.31752 3.46362 3.51571 3.53414 4.35516 4.58451 4.62726 4.75862 4.96126 5.05970 5.08379 5.13663 5.27808 5.31746 5.45929 5.50175 5.58183 5.64745 5.68878 5.79742 5.91399 6.00374 6.07613 6.16627 6.21371 6.24485 6.35614 6.46383 6.67899 6.79876 6.84023 7.00132 7.56868 7.73037 8.22230 8.40179 9.52045 10.05526 10.41182 11.44214 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.004027 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.088547 B = 6951.902583 C = 7658.209756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.002 3.998 3 C -0.221 4.221 4 C -0.124 4.124 5 C -0.068 4.068 6 C 0.594 3.406 7 O -0.522 6.522 8 N -0.595 5.595 9 C 0.097 3.903 10 C -0.128 4.128 11 C -0.126 4.126 12 C 0.168 3.832 13 H 0.052 0.948 14 N -0.718 5.718 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.092 3.908 24 O -0.155 6.155 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.093 0.907 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 13.522 0.739 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 C -0.240 4.240 4 C -0.144 4.144 5 C -0.120 4.120 6 C 0.381 3.619 7 O -0.400 6.400 8 N -0.328 5.328 9 C -0.026 4.026 10 C -0.167 4.167 11 C -0.165 4.165 12 C 0.057 3.943 13 H 0.070 0.930 14 N -0.358 5.358 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.032 4.032 24 O -0.052 6.052 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.171 0.829 29 H 0.177 0.823 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.538 13.453 0.753 23.734 hybrid contribution 0.963 0.056 0.017 0.965 sum -18.575 13.509 0.770 22.981 Atomic orbital electron populations 1.20386 0.84797 1.04340 1.03820 1.22926 0.94404 0.84775 1.02846 1.21555 0.92389 0.99642 1.10460 1.21934 0.98567 0.93018 1.00907 1.22259 0.81764 0.94712 1.13251 1.16759 0.85890 0.81457 0.77838 1.90884 1.22484 1.75430 1.51176 1.48192 1.11364 1.05455 1.67745 1.22135 0.84075 0.98628 0.97723 1.21877 0.99595 0.97809 0.97431 1.21839 0.94901 0.97574 1.02168 1.20410 0.88456 0.90892 0.94577 0.93027 1.42375 1.02722 1.11162 1.79560 1.19289 0.83444 0.97352 1.37338 0.90979 1.24748 0.98141 0.95867 1.01903 1.69665 1.32517 1.03578 1.52284 0.86179 0.85024 0.76961 0.78000 1.21582 1.21773 1.20647 1.22803 0.88245 0.91266 1.00885 1.84215 1.16258 1.33835 1.70931 0.89702 0.90219 0.89175 0.82916 0.82344 0.91330 0.88445 0.90883 0.91630 0.91971 0.91292 0.78031 0.93462 0.88876 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.41 36.01 0.37 -0.03 16 2 C 0.00 0.02 7.31 -35.41 -0.26 -0.24 16 3 C -0.22 -2.20 10.77 -39.89 -0.43 -2.63 16 4 C -0.12 -1.58 10.63 -39.39 -0.42 -1.99 16 5 C -0.07 -0.99 6.77 -36.80 -0.25 -1.24 16 6 C 0.59 10.46 7.65 -12.86 -0.10 10.37 16 7 O -0.52 -10.95 16.30 5.19 0.08 -10.87 16 8 N -0.60 -9.94 2.98 -174.59 -0.52 -10.46 16 9 C 0.10 1.27 6.11 -3.71 -0.02 1.24 16 10 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 11 C -0.13 -2.04 5.36 -26.69 -0.14 -2.18 16 12 C 0.17 3.41 2.91 -68.02 -0.20 3.21 16 13 H 0.05 1.12 8.08 -51.93 -0.42 0.71 16 14 N -0.72 -18.01 5.12 -53.52 -0.27 -18.29 16 15 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 16 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 19 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 23 C 0.09 1.80 6.00 -3.93 -0.02 1.77 16 24 O -0.16 -1.89 7.26 4.98 0.04 -1.85 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.16 1.92 8.06 -52.49 -0.42 1.49 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.17 4.24 -53.04 -0.22 0.95 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.39 10.13 7.80 -40.82 -0.32 9.81 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.09 2.09 7.00 -51.93 -0.36 1.73 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -32.83 323.66 -7.49 -40.32 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.52 Total: 6.82 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.87 Total: -0.93 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.07 Total: -56.19 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.12 Total: -12.72 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.83 -7.49 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998490028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.198 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds