Wall clock time and date at job start Tue Mar 31 2020 00:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35137 * 125.61526 * 2 1 4 4 C 1.40365 * 107.11567 * 179.72550 * 3 2 1 5 5 C 1.36542 * 106.70704 * 0.23684 * 4 3 2 6 6 C 1.46657 * 125.99039 * 179.97438 * 5 4 3 7 7 O 1.21695 * 119.99334 * 7.55169 * 6 5 4 8 8 N 1.34774 * 120.00533 * 187.54890 * 6 5 4 9 9 C 1.46921 * 120.62730 * 7.38742 * 8 6 5 10 10 C 1.53195 * 108.77692 * 126.37014 * 9 8 6 11 11 C 1.53038 * 109.31071 * 54.63240 * 10 9 8 12 12 C 1.53049 * 109.53917 * 298.63679 * 11 10 9 13 13 H 1.08991 * 109.49476 * 301.38130 * 12 11 10 14 14 N 1.46505 * 109.49694 * 181.31450 * 12 11 10 15 15 C 1.36936 * 119.99573 * 155.00047 * 14 12 11 16 16 H 1.08001 * 120.00112 * 0.02562 * 15 14 12 17 17 C 1.38810 * 119.99882 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99809 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00165 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47053 * 89.99921 * 19 17 15 21 21 H 1.48495 * 109.47236 * 210.00175 * 19 17 15 22 22 H 1.48498 * 109.47001 * 329.99929 * 19 17 15 23 23 C 1.46921 * 120.63201 * 187.11090 * 8 6 5 24 24 O 1.33933 * 125.61963 * 180.13670 * 2 1 3 25 25 H 1.09001 * 109.47005 * 90.00295 * 1 2 3 26 26 H 1.09000 * 109.46667 * 210.00119 * 1 2 3 27 27 H 1.08994 * 109.47367 * 330.00499 * 1 2 3 28 28 H 1.07998 * 126.44088 * 359.97438 * 3 2 1 29 29 H 1.07997 * 126.64775 * 180.26810 * 4 3 2 30 30 H 1.09002 * 109.58968 * 246.15568 * 9 8 6 31 31 H 1.09000 * 109.59272 * 6.43759 * 9 8 6 32 32 H 1.08996 * 109.49670 * 174.58293 * 10 9 8 33 33 H 1.09001 * 109.49585 * 294.68265 * 10 9 8 34 34 H 1.09000 * 109.46081 * 58.65814 * 11 10 9 35 35 H 1.09000 * 109.46035 * 178.61806 * 11 10 9 36 36 H 0.96998 * 119.99800 * 335.00620 * 14 12 11 37 37 H 0.97006 * 119.99890 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.58619 * 353.41687 * 23 8 6 39 39 H 1.08998 * 109.59229 * 113.84352 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6532 0.0064 5 6 3.5824 -0.7115 0.0047 6 6 4.7415 -1.6100 0.0092 7 8 5.8618 -1.1571 0.1535 8 7 4.5660 -2.9372 -0.1465 9 6 3.2440 -3.4832 -0.4821 10 6 3.3754 -4.3608 -1.7309 11 6 4.4517 -5.4222 -1.4926 12 6 5.7974 -4.7387 -1.2387 13 1 6.0566 -4.1165 -2.0952 14 7 6.8331 -5.7559 -1.0418 15 6 8.1437 -5.4583 -1.3042 16 1 8.4138 -4.4736 -1.6560 17 6 9.1250 -6.4223 -1.1182 18 7 8.7957 -7.6225 -0.6900 19 14 10.9128 -6.0165 -1.4769 20 1 11.5550 -5.4822 -0.2492 21 1 11.6221 -7.2467 -1.9112 22 1 10.9825 -4.9981 -2.5554 23 6 5.6945 -3.8650 0.0102 24 8 2.2871 -1.0887 -0.0026 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9613 2.1260 -0.0004 29 1 4.5113 1.2704 0.0122 30 1 2.8748 -4.0837 0.3493 31 1 2.5501 -2.6658 -0.6787 32 1 2.4222 -4.8486 -1.9347 33 1 3.6572 -3.7416 -2.5826 34 1 4.1815 -6.0252 -0.6257 35 1 4.5301 -6.0634 -2.3705 36 1 6.5904 -6.6402 -0.7256 37 1 9.4815 -8.2960 -0.5596 38 1 6.6177 -3.2994 0.1358 39 1 5.5293 -4.4973 0.8825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998490028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:41 Heat of formation + Delta-G solvation = -24.921959 kcal Electronic energy + Delta-G solvation = -21781.600938 eV Core-core repulsion = 18497.475988 eV Total energy + Delta-G solvation = -3284.124950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.78910 -41.04525 -38.80400 -36.31689 -34.43783 -33.86647 -32.89857 -32.80128 -30.27478 -28.36742 -26.25401 -25.91844 -23.41206 -23.17985 -22.44248 -21.56035 -20.70591 -19.18884 -18.59103 -17.66826 -17.41046 -16.70171 -16.49308 -16.09211 -15.57519 -15.47386 -15.23629 -15.08387 -14.34117 -14.14089 -14.08186 -14.00795 -13.92722 -13.66233 -13.60161 -13.07950 -12.91571 -12.75693 -12.55047 -12.21764 -11.98377 -11.95681 -11.72405 -11.40896 -11.34779 -11.10621 -11.01109 -9.94519 -9.44536 -9.04908 -8.00326 -5.30029 -0.02244 1.34636 1.43115 1.45435 1.46998 1.54100 1.95433 2.09878 2.52265 3.32255 3.40685 3.70210 3.84795 3.91114 3.96123 4.00857 4.18314 4.28929 4.32636 4.46997 4.56584 4.64755 4.67415 4.74247 4.79029 4.81820 4.91202 4.93967 5.03710 5.07302 5.17439 5.32306 5.39375 5.40469 5.48188 5.54634 5.87707 6.22174 6.28834 6.88730 7.29108 7.99704 8.26336 9.22234 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.004027 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.088547 B = 6951.902583 C = 7658.209756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.022 3.978 3 C -0.229 4.229 4 C -0.120 4.120 5 C -0.105 4.105 6 C 0.588 3.412 7 O -0.573 6.573 8 N -0.596 5.596 9 C 0.094 3.906 10 C -0.118 4.118 11 C -0.118 4.118 12 C 0.167 3.833 13 H 0.031 0.969 14 N -0.728 5.728 15 C -0.248 4.248 16 H 0.065 0.935 17 C -0.066 4.066 18 N -0.963 5.963 19 Si 0.969 3.031 20 H -0.288 1.288 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.106 3.894 24 O -0.159 6.159 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.185 0.815 29 H 0.155 0.845 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.379 0.621 37 H 0.254 0.746 38 H 0.054 0.946 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.553 14.772 0.418 27.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.030 4.030 3 C -0.247 4.247 4 C -0.141 4.141 5 C -0.156 4.156 6 C 0.378 3.622 7 O -0.455 6.455 8 N -0.327 5.327 9 C -0.026 4.026 10 C -0.157 4.157 11 C -0.156 4.156 12 C 0.057 3.943 13 H 0.049 0.951 14 N -0.368 5.368 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.259 4.259 18 N -0.613 5.613 19 Si 0.798 3.202 20 H -0.215 1.215 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.019 4.019 24 O -0.056 6.056 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.202 0.798 29 H 0.173 0.827 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.211 0.789 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.901 14.726 0.418 27.231 hybrid contribution 1.815 -0.206 0.122 1.831 sum -21.086 14.520 0.540 25.608 Atomic orbital electron populations 1.20685 0.81117 1.06042 1.05502 1.23903 0.96141 0.83806 0.99175 1.21908 0.90761 1.01456 1.10615 1.22198 1.00161 0.92535 0.99186 1.21553 0.81983 0.94379 1.17681 1.17180 0.86440 0.81801 0.76798 1.90838 1.24763 1.76369 1.53550 1.48210 1.11857 1.05050 1.67607 1.22424 0.82306 0.99452 0.98443 1.21861 1.00104 0.96710 0.96998 1.21747 0.93195 0.98286 1.02365 1.20554 0.89711 0.90144 0.93874 0.95098 1.42485 1.02801 1.11842 1.79665 1.19525 0.85128 0.96939 1.36396 0.91698 1.25486 1.01923 0.95922 1.02562 1.69791 1.33446 1.04316 1.53731 0.85218 0.80402 0.76815 0.77811 1.21517 1.21449 1.19885 1.22274 0.88183 0.91098 1.00318 1.84144 1.15304 1.34952 1.71227 0.87785 0.89235 0.86775 0.79791 0.82692 0.89624 0.86666 0.86757 0.92173 0.91142 0.91582 0.78857 0.93751 0.92771 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.41 71.24 0.74 0.33 16 2 C 0.02 0.33 7.31 24.97 0.18 0.52 16 3 C -0.23 -3.84 10.77 22.07 0.24 -3.61 16 4 C -0.12 -2.96 10.63 22.39 0.24 -2.72 16 5 C -0.10 -2.99 6.77 24.07 0.16 -2.83 16 6 C 0.59 21.48 7.65 86.44 0.66 22.14 16 7 O -0.57 -25.70 16.30 -4.33 -0.07 -25.77 16 8 N -0.60 -20.21 2.98 -824.49 -2.46 -22.66 16 9 C 0.09 2.28 6.11 86.36 0.53 2.81 16 10 C -0.12 -2.75 6.08 30.67 0.19 -2.56 16 11 C -0.12 -3.69 5.36 30.62 0.16 -3.52 16 12 C 0.17 6.99 2.91 44.93 0.13 7.12 16 13 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 14 N -0.73 -37.81 5.12 -323.24 -1.66 -39.46 16 15 C -0.25 -14.45 9.93 84.03 0.83 -13.61 16 16 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 17 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 18 N -0.96 -59.38 13.06 21.65 0.28 -59.10 16 19 Si 0.97 47.93 29.55 68.60 2.03 49.95 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 23 C 0.11 4.35 6.00 86.22 0.52 4.86 16 24 O -0.16 -3.47 7.26 -5.08 -0.04 -3.51 16 25 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 29 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.12 2.46 4.24 -19.95 -0.08 2.37 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.38 20.49 7.80 -92.71 -0.72 19.76 16 37 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 38 H 0.05 2.62 7.00 -2.39 -0.02 2.60 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -75.10 323.66 3.40 -71.69 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.26 Total: 23.35 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 5.05 Total: 5.50 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -3.83 Total: -121.22 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.11 Total: -29.28 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.95 kcal Total: -75.10 3.40 -71.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998490028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.770 kcal (2) G-P(sol) polarization free energy of solvation -75.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds