Wall clock time and date at job start Tue Mar 31 2020 01:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40359 * 126.64701 * 2 1 4 4 C 1.35125 * 107.11847 * 180.29894 * 3 2 1 5 5 O 1.33936 * 108.76297 * 359.74891 * 4 3 2 6 6 C 1.34910 * 109.38462 * 359.97438 * 5 4 3 7 7 C 1.46663 * 125.98811 * 180.02562 * 6 5 4 8 8 O 1.21693 * 119.99997 * 173.17856 * 7 6 5 9 9 N 1.34780 * 119.99675 * 353.17717 * 7 6 5 10 10 C 1.46928 * 120.63081 * 353.47247 * 9 7 6 11 11 C 1.53196 * 108.77451 * 126.41240 * 10 9 7 12 12 C 1.53041 * 109.31174 * 54.63183 * 11 10 9 13 13 C 1.53034 * 109.54046 * 298.63459 * 12 11 10 14 14 H 1.09006 * 109.49327 * 301.38205 * 13 12 11 15 15 N 1.46501 * 109.49832 * 181.32113 * 13 12 11 16 16 C 1.36940 * 119.99918 * 154.99981 * 15 13 12 17 17 H 1.07994 * 120.00143 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99668 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00316 * 359.72472 * 18 16 15 20 20 Si 1.86799 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47027 * 89.99610 * 20 18 16 22 22 H 1.48493 * 109.47450 * 210.00042 * 20 18 16 23 23 H 1.48502 * 109.47050 * 330.00088 * 20 18 16 24 24 C 1.46922 * 120.62961 * 173.49126 * 9 7 6 25 25 H 1.09001 * 109.46625 * 270.13143 * 1 2 3 26 26 H 1.09000 * 109.47242 * 30.13028 * 1 2 3 27 27 H 1.08998 * 109.46987 * 150.13151 * 1 2 3 28 28 H 1.08008 * 126.44147 * 0.03999 * 3 2 1 29 29 H 1.08001 * 125.62154 * 179.70103 * 4 3 2 30 30 H 1.08993 * 109.58708 * 6.62338 * 10 9 7 31 31 H 1.09004 * 109.58493 * 246.19819 * 10 9 7 32 32 H 1.08999 * 109.49825 * 294.68032 * 11 10 9 33 33 H 1.09003 * 109.49230 * 174.57977 * 11 10 9 34 34 H 1.09000 * 109.45682 * 178.61237 * 12 11 10 35 35 H 1.09001 * 109.44832 * 58.64894 * 12 11 10 36 36 H 0.96995 * 119.99581 * 334.99383 * 15 13 12 37 37 H 0.96997 * 120.00525 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.58966 * 113.80039 * 24 9 7 39 39 H 1.09005 * 109.58623 * 353.37534 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3449 1.1261 0.0000 4 6 3.6184 0.6745 -0.0067 5 8 3.6005 -0.6648 -0.0053 6 6 2.3220 -1.0955 0.0030 7 6 1.8842 -2.4953 0.0076 8 8 0.7046 -2.7635 0.1402 9 7 2.7884 -3.4846 -0.1351 10 6 4.1928 -3.1772 -0.4382 11 6 5.0835 -3.8646 0.6015 12 6 4.7605 -5.3601 0.6352 13 6 3.2992 -5.5591 1.0439 14 1 3.1306 -5.1091 2.0223 15 7 2.9996 -6.9918 1.1065 16 6 1.9846 -7.4447 1.9063 17 1 1.4052 -6.7459 2.4913 18 6 1.7005 -8.8022 1.9652 19 7 2.4031 -9.6533 1.2481 20 14 0.3164 -9.4202 3.0568 21 1 -0.9516 -9.4413 2.2841 22 1 0.6322 -10.7927 3.5273 23 1 0.1681 -8.5177 4.2268 24 6 2.3883 -4.8909 0.0092 25 1 -0.3632 0.0024 1.0277 26 1 -0.3634 0.8888 -0.5158 27 1 -0.3633 -0.8911 -0.5118 28 1 2.0307 2.1595 0.0006 29 1 4.5047 1.2916 -0.0131 30 1 4.3480 -2.0992 -0.3969 31 1 4.4411 -3.5463 -1.4333 32 1 4.8980 -3.4301 1.5838 33 1 6.1306 -3.7245 0.3330 34 1 5.4101 -5.8557 1.3567 35 1 4.9225 -5.7888 -0.3538 36 1 3.5203 -7.6194 0.5813 37 1 2.2043 -10.6018 1.2889 38 1 2.4893 -5.3998 -0.9494 39 1 1.3528 -4.9435 0.3458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998551112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:18 Heat of formation + Delta-G solvation = -0.363303 kcal Electronic energy + Delta-G solvation = -21985.059786 eV Core-core repulsion = 18701.999780 eV Total energy + Delta-G solvation = -3283.060007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.87157 -39.64096 -37.37917 -34.70036 -34.01886 -32.30694 -31.25560 -30.51527 -28.41639 -27.61505 -25.17818 -24.00641 -22.49458 -21.87729 -21.45387 -19.90337 -19.17368 -17.38929 -17.08983 -16.61169 -16.33023 -15.63704 -14.98761 -14.46916 -14.22516 -14.18027 -13.70543 -13.47721 -13.31742 -13.23845 -13.13617 -12.74405 -12.47679 -12.34304 -12.17087 -11.84349 -11.30355 -10.97458 -10.82788 -10.59732 -10.50066 -10.20167 -9.93854 -9.83225 -9.82557 -9.64018 -9.08410 -8.76168 -8.30571 -7.00305 -5.78603 -3.08538 1.02945 2.22917 2.57326 3.24186 3.29452 3.45850 3.51082 3.52637 4.46552 4.58756 4.64599 4.73790 5.03037 5.14233 5.27729 5.34990 5.41807 5.45678 5.50189 5.59024 5.67840 5.79922 5.85749 5.91178 6.00659 6.06289 6.14022 6.18688 6.21900 6.34262 6.37322 6.46537 6.71611 6.79841 6.84370 7.00466 7.59409 7.71850 8.24664 8.39600 9.51404 10.05014 10.40571 11.43639 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024893 B = 0.004458 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.548003 B = 6279.725755 C = 7141.340356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.094 4.094 3 C -0.223 4.223 4 C -0.022 4.022 5 O -0.155 6.155 6 C -0.074 4.074 7 C 0.593 3.407 8 O -0.520 6.520 9 N -0.596 5.596 10 C 0.091 3.909 11 C -0.127 4.127 12 C -0.127 4.127 13 C 0.168 3.832 14 H 0.051 0.949 15 N -0.717 5.717 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.093 3.907 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.153 0.847 29 H 0.206 0.794 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.064 0.936 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 21.603 -4.565 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.242 4.242 4 C -0.090 4.090 5 O -0.052 6.052 6 C -0.125 4.125 7 C 0.381 3.619 8 O -0.399 6.399 9 N -0.328 5.328 10 C -0.031 4.031 11 C -0.166 4.166 12 C -0.165 4.165 13 C 0.057 3.943 14 H 0.069 0.931 15 N -0.358 5.358 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.031 4.031 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.170 0.830 29 H 0.223 0.777 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.052 21.141 -4.362 22.169 hybrid contribution -0.491 -0.336 0.337 0.684 sum 4.561 20.805 -4.024 21.676 Atomic orbital electron populations 1.20387 0.88306 1.03260 1.02937 1.20629 0.97643 0.91018 1.00396 1.21698 0.92503 0.99958 1.10031 1.24464 0.99811 0.81720 1.03042 1.84227 1.28183 1.21733 1.71062 1.22113 0.81264 0.95024 1.14099 1.16747 0.85667 0.81712 0.77802 1.90849 1.15938 1.81911 1.51163 1.48198 1.08826 1.07323 1.68456 1.22272 0.80429 1.01781 0.98637 1.21856 0.98828 0.96525 0.99376 1.21842 0.98046 0.94669 1.01965 1.20498 0.91160 0.86709 0.95953 0.93056 1.42380 1.39871 1.00132 1.53408 1.19279 1.08396 0.91310 1.18496 0.91020 1.24742 0.99627 0.95944 1.00268 1.69659 1.42313 1.02031 1.43997 0.86185 0.81907 0.77958 0.80148 1.21565 1.21759 1.20666 1.22888 1.02364 0.76899 1.00921 0.90762 0.91721 0.89683 0.82960 0.77709 0.87826 0.91391 0.91610 0.90972 0.91334 0.92003 0.78024 0.93444 0.91746 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.75 36.01 0.35 -0.74 16 2 C -0.09 -1.20 6.20 -104.43 -0.65 -1.84 16 3 C -0.22 -2.14 10.83 -39.89 -0.43 -2.57 16 4 C -0.02 -0.18 12.08 29.62 0.36 0.17 16 5 O -0.16 -1.81 7.14 4.99 0.04 -1.78 16 6 C -0.07 -1.05 6.83 -36.80 -0.25 -1.31 16 7 C 0.59 10.28 7.65 -12.86 -0.10 10.18 16 8 O -0.52 -10.48 14.29 5.20 0.07 -10.41 16 9 N -0.60 -9.85 2.97 -174.31 -0.52 -10.37 16 10 C 0.09 1.18 6.33 -3.71 -0.02 1.16 16 11 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 12 C -0.13 -2.04 5.35 -26.69 -0.14 -2.18 16 13 C 0.17 3.39 2.92 -67.81 -0.20 3.19 16 14 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 15 N -0.72 -17.94 5.12 -53.31 -0.27 -18.22 16 16 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16 17 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 20 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.09 1.81 6.00 -3.71 -0.02 1.79 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.18 6.62 -51.93 -0.34 0.83 16 28 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.10 1.22 3.80 -55.00 -0.21 1.01 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 2.05 7.05 -51.93 -0.37 1.68 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -32.40 319.63 -7.11 -39.51 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.43 Total: 7.39 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.51 Total: -1.30 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.07 Total: -55.93 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.11 Total: -12.18 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.40 -7.11 -39.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998551112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.148 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds