Wall clock time and date at job start Tue Mar 31 2020 01:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40359 * 126.64701 * 2 1 4 4 C 1.35125 * 107.11847 * 180.29894 * 3 2 1 5 5 O 1.33936 * 108.76297 * 359.74891 * 4 3 2 6 6 C 1.34910 * 109.38462 * 359.97438 * 5 4 3 7 7 C 1.46663 * 125.98811 * 180.02562 * 6 5 4 8 8 O 1.21693 * 119.99997 * 173.17856 * 7 6 5 9 9 N 1.34780 * 119.99675 * 353.17717 * 7 6 5 10 10 C 1.46928 * 120.63081 * 353.47247 * 9 7 6 11 11 C 1.53196 * 108.77451 * 126.41240 * 10 9 7 12 12 C 1.53041 * 109.31174 * 54.63183 * 11 10 9 13 13 C 1.53034 * 109.54046 * 298.63459 * 12 11 10 14 14 H 1.09006 * 109.49327 * 301.38205 * 13 12 11 15 15 N 1.46501 * 109.49832 * 181.32113 * 13 12 11 16 16 C 1.36940 * 119.99918 * 154.99981 * 15 13 12 17 17 H 1.07994 * 120.00143 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99668 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00316 * 359.72472 * 18 16 15 20 20 Si 1.86799 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47027 * 89.99610 * 20 18 16 22 22 H 1.48493 * 109.47450 * 210.00042 * 20 18 16 23 23 H 1.48502 * 109.47050 * 330.00088 * 20 18 16 24 24 C 1.46922 * 120.62961 * 173.49126 * 9 7 6 25 25 H 1.09001 * 109.46625 * 270.13143 * 1 2 3 26 26 H 1.09000 * 109.47242 * 30.13028 * 1 2 3 27 27 H 1.08998 * 109.46987 * 150.13151 * 1 2 3 28 28 H 1.08008 * 126.44147 * 0.03999 * 3 2 1 29 29 H 1.08001 * 125.62154 * 179.70103 * 4 3 2 30 30 H 1.08993 * 109.58708 * 6.62338 * 10 9 7 31 31 H 1.09004 * 109.58493 * 246.19819 * 10 9 7 32 32 H 1.08999 * 109.49825 * 294.68032 * 11 10 9 33 33 H 1.09003 * 109.49230 * 174.57977 * 11 10 9 34 34 H 1.09000 * 109.45682 * 178.61237 * 12 11 10 35 35 H 1.09001 * 109.44832 * 58.64894 * 12 11 10 36 36 H 0.96995 * 119.99581 * 334.99383 * 15 13 12 37 37 H 0.96997 * 120.00525 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.58966 * 113.80039 * 24 9 7 39 39 H 1.09005 * 109.58623 * 353.37534 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3449 1.1261 0.0000 4 6 3.6184 0.6745 -0.0067 5 8 3.6005 -0.6648 -0.0053 6 6 2.3220 -1.0955 0.0030 7 6 1.8842 -2.4953 0.0076 8 8 0.7046 -2.7635 0.1402 9 7 2.7884 -3.4846 -0.1351 10 6 4.1928 -3.1772 -0.4382 11 6 5.0835 -3.8646 0.6015 12 6 4.7605 -5.3601 0.6352 13 6 3.2992 -5.5591 1.0439 14 1 3.1306 -5.1091 2.0223 15 7 2.9996 -6.9918 1.1065 16 6 1.9846 -7.4447 1.9063 17 1 1.4052 -6.7459 2.4913 18 6 1.7005 -8.8022 1.9652 19 7 2.4031 -9.6533 1.2481 20 14 0.3164 -9.4202 3.0568 21 1 -0.9516 -9.4413 2.2841 22 1 0.6322 -10.7927 3.5273 23 1 0.1681 -8.5177 4.2268 24 6 2.3883 -4.8909 0.0092 25 1 -0.3632 0.0024 1.0277 26 1 -0.3634 0.8888 -0.5158 27 1 -0.3633 -0.8911 -0.5118 28 1 2.0307 2.1595 0.0006 29 1 4.5047 1.2916 -0.0131 30 1 4.3480 -2.0992 -0.3969 31 1 4.4411 -3.5463 -1.4333 32 1 4.8980 -3.4301 1.5838 33 1 6.1306 -3.7245 0.3330 34 1 5.4101 -5.8557 1.3567 35 1 4.9225 -5.7888 -0.3538 36 1 3.5203 -7.6194 0.5813 37 1 2.2043 -10.6018 1.2889 38 1 2.4893 -5.3998 -0.9494 39 1 1.3528 -4.9435 0.3458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998551112.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:17 Heat of formation + Delta-G solvation = -22.103289 kcal Electronic energy + Delta-G solvation = -21986.002503 eV Core-core repulsion = 18701.999780 eV Total energy + Delta-G solvation = -3284.002723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.74281 -40.96837 -38.79820 -36.33898 -35.08024 -33.93780 -32.80773 -31.55035 -29.99320 -28.73881 -26.43942 -25.91986 -23.51702 -23.34815 -22.42226 -21.23605 -20.32892 -19.17281 -18.52457 -17.61978 -17.30867 -16.93803 -16.65437 -16.03010 -15.62360 -15.43732 -15.17424 -15.13662 -14.57508 -14.18253 -14.11276 -14.00666 -13.79936 -13.58020 -13.46430 -13.02994 -12.91178 -12.76097 -12.54665 -12.21340 -11.95313 -11.94529 -11.60565 -11.38466 -11.22608 -11.04794 -10.64594 -9.93926 -9.51343 -9.03837 -7.99975 -5.29740 0.04087 1.43367 1.44641 1.46057 1.53796 1.58424 2.04722 2.14066 2.52633 3.33099 3.49019 3.74176 3.82275 3.93693 3.98432 4.02437 4.20221 4.29945 4.33981 4.47595 4.63332 4.64206 4.68515 4.73604 4.75699 4.82958 4.95325 5.01692 5.08924 5.13933 5.26964 5.33995 5.40963 5.42467 5.47541 5.58931 5.93548 6.22412 6.35329 6.95346 7.29316 8.00172 8.26432 9.22683 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024893 B = 0.004458 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.548003 B = 6279.725755 C = 7141.340356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.094 4.094 3 C -0.233 4.233 4 C 0.010 3.990 5 O -0.160 6.160 6 C -0.113 4.113 7 C 0.586 3.414 8 O -0.566 6.566 9 N -0.598 5.598 10 C 0.088 3.912 11 C -0.116 4.116 12 C -0.118 4.118 13 C 0.168 3.832 14 H 0.032 0.968 15 N -0.728 5.728 16 C -0.248 4.248 17 H 0.066 0.934 18 C -0.065 4.065 19 N -0.963 5.963 20 Si 0.968 3.032 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.273 1.273 24 C 0.109 3.891 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.184 0.816 29 H 0.259 0.741 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.378 0.622 37 H 0.254 0.746 38 H 0.061 0.939 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 24.771 -4.738 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.252 4.252 4 C -0.058 4.058 5 O -0.057 6.057 6 C -0.164 4.164 7 C 0.376 3.624 8 O -0.448 6.448 9 N -0.330 5.330 10 C -0.033 4.033 11 C -0.155 4.155 12 C -0.157 4.157 13 C 0.058 3.942 14 H 0.050 0.950 15 N -0.368 5.368 16 C -0.380 4.380 17 H 0.084 0.916 18 C -0.258 4.258 19 N -0.613 5.613 20 Si 0.797 3.203 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.198 1.198 24 C -0.016 4.016 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.075 0.925 28 H 0.201 0.799 29 H 0.275 0.725 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.211 0.789 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.954 24.362 -4.538 25.738 hybrid contribution -1.033 -1.116 0.367 1.564 sum 5.921 23.246 -4.171 24.348 Atomic orbital electron populations 1.20392 0.88507 1.03261 1.02843 1.20997 0.98015 0.91998 0.98698 1.22057 0.92268 1.00430 1.10436 1.25536 1.01356 0.80358 0.98541 1.84127 1.26656 1.23562 1.71332 1.21446 0.82841 0.93499 1.18645 1.17203 0.85183 0.83209 0.76825 1.90810 1.17788 1.83039 1.53190 1.48211 1.10520 1.05767 1.68473 1.22567 0.78020 1.03301 0.99385 1.21831 1.00999 0.93381 0.99267 1.21753 0.94412 0.97550 1.01960 1.20640 0.94256 0.84034 0.95295 0.94950 1.42500 1.39210 1.02100 1.53021 1.19528 1.08711 0.91482 1.18287 0.91635 1.25480 1.02134 0.96168 1.02038 1.69788 1.43921 1.01994 1.45625 0.85222 0.79020 0.77376 0.78655 1.21545 1.21471 1.19823 1.22327 0.99960 0.79244 1.00119 0.90907 0.88790 0.92521 0.79917 0.72517 0.85797 0.89945 0.92050 0.86942 0.91653 0.91363 0.78913 0.93759 0.92070 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.19 9.75 71.24 0.69 -1.50 16 2 C -0.09 -2.25 6.20 -19.74 -0.12 -2.37 16 3 C -0.23 -3.52 10.83 22.07 0.24 -3.28 16 4 C 0.01 0.12 12.08 67.10 0.81 0.94 16 5 O -0.16 -3.21 7.14 -5.05 -0.04 -3.24 16 6 C -0.11 -3.15 6.83 24.07 0.16 -2.98 16 7 C 0.59 20.99 7.65 86.44 0.66 21.65 16 8 O -0.57 -24.47 14.29 -4.32 -0.06 -24.53 16 9 N -0.60 -20.10 2.97 -823.62 -2.45 -22.55 16 10 C 0.09 2.10 6.33 86.36 0.55 2.65 16 11 C -0.12 -2.68 6.08 30.67 0.19 -2.49 16 12 C -0.12 -3.72 5.35 30.62 0.16 -3.55 16 13 C 0.17 6.98 2.92 45.07 0.13 7.12 16 14 H 0.03 1.46 8.08 -2.38 -0.02 1.44 16 15 N -0.73 -37.79 5.12 -322.58 -1.65 -39.44 16 16 C -0.25 -14.40 9.93 84.03 0.83 -13.57 16 17 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 18 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 19 N -0.96 -59.37 13.06 21.65 0.28 -59.09 16 20 Si 0.97 47.73 29.55 68.60 2.03 49.75 16 21 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 24 C 0.11 4.44 6.00 86.36 0.52 4.95 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.66 6.62 -2.39 -0.02 1.64 16 28 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 29 H 0.26 0.20 8.06 -2.91 -0.02 0.17 16 30 H 0.13 2.54 3.80 -50.88 -0.19 2.35 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.38 20.50 7.80 -92.71 -0.72 19.78 16 37 H 0.25 15.10 8.31 -92.71 -0.77 14.32 16 38 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.05 2.56 7.05 -2.38 -0.02 2.55 16 Total: -1.00 -75.01 319.63 3.56 -71.44 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.16 Total: 23.48 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.29 Total: 4.18 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -3.82 Total: -121.08 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.10 Total: -27.77 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -75.01 3.56 -71.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998551112.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.342 kcal (2) G-P(sol) polarization free energy of solvation -75.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds