Wall clock time and date at job start Tue Mar 31 2020 00:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34179 * 125.43527 * 2 1 4 4 C 1.47029 * 105.95180 * 180.14682 * 3 2 1 5 5 C 1.47380 * 127.19166 * 179.83654 * 4 3 2 6 6 O 1.21609 * 119.99905 * 153.11318 * 5 4 3 7 7 N 1.34777 * 119.99758 * 333.10884 * 5 4 3 8 8 C 1.46931 * 120.60596 * 353.66185 * 7 5 4 9 9 C 1.53190 * 108.76986 * 233.57408 * 8 7 5 10 10 C 1.53039 * 109.34221 * 305.41765 * 9 8 7 11 11 C 1.53036 * 109.53909 * 61.34580 * 10 9 8 12 12 H 1.09006 * 109.49855 * 58.59019 * 11 10 9 13 13 N 1.46501 * 109.49772 * 178.65044 * 11 10 9 14 14 C 1.36936 * 119.99986 * 204.99860 * 13 11 10 15 15 H 1.07999 * 120.00054 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00095 * 180.02562 * 14 13 11 17 17 N 1.31621 * 120.00661 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00020 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47266 * 89.99661 * 18 16 14 20 20 H 1.48497 * 109.47253 * 210.00263 * 18 16 14 21 21 H 1.48500 * 109.46995 * 330.00290 * 18 16 14 22 22 C 1.46928 * 120.62622 * 173.68355 * 7 5 4 23 23 C 1.36418 * 105.61276 * 359.57276 * 4 3 2 24 24 O 1.33650 * 108.39974 * 0.26500 * 23 4 3 25 25 H 1.08999 * 109.47138 * 180.35169 * 1 2 3 26 26 H 1.08999 * 109.47251 * 300.35948 * 1 2 3 27 27 H 1.08998 * 109.47223 * 60.35990 * 1 2 3 28 28 H 1.08001 * 127.02706 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.55849 * 113.81005 * 8 7 5 30 30 H 1.09001 * 109.61461 * 353.37626 * 8 7 5 31 31 H 1.08996 * 109.49940 * 185.44842 * 9 8 7 32 32 H 1.09007 * 109.49621 * 65.38383 * 9 8 7 33 33 H 1.09004 * 109.46309 * 181.37124 * 10 9 8 34 34 H 1.09005 * 109.45844 * 301.33106 * 10 9 8 35 35 H 0.96996 * 120.00242 * 25.00713 * 13 11 10 36 36 H 0.96998 * 120.00496 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.58607 * 6.60372 * 22 7 5 38 38 H 1.09004 * 109.69762 * 246.24910 * 22 7 5 39 39 H 1.08004 * 125.79905 * 180.25668 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6710 0.6029 -0.0036 5 6 4.9025 1.4126 -0.0083 6 8 5.9280 0.9623 0.4654 7 7 4.8920 2.6519 -0.5377 8 6 3.7022 3.1569 -1.2365 9 6 4.1177 3.6451 -2.6278 10 6 5.2477 4.6680 -2.4894 11 6 6.4588 4.0064 -1.8280 12 1 6.7828 3.1568 -2.4292 13 7 7.5510 4.9774 -1.7253 14 6 8.8484 4.5443 -1.6613 15 1 9.0666 3.4869 -1.6871 16 6 9.8832 5.4643 -1.5635 17 7 11.1304 5.0482 -1.5025 18 14 9.5058 7.2933 -1.5183 19 1 9.3201 7.7257 -0.1099 20 1 10.6337 8.0466 -2.1228 21 1 8.2634 7.5614 -2.2862 22 6 6.0700 3.5230 -0.4273 23 6 3.5790 -0.7582 0.0043 24 8 2.2852 -1.0935 0.0063 25 1 -0.3633 -1.0276 0.0063 26 1 -0.3634 0.5194 0.8867 27 1 -0.3633 0.5082 -0.8932 28 1 1.9595 2.1231 -0.0004 29 1 3.2715 3.9842 -0.6725 30 1 2.9682 2.3570 -1.3341 31 1 3.2639 4.1106 -3.1201 32 1 4.4636 2.7991 -3.2219 33 1 5.5284 5.0348 -3.4768 34 1 4.9090 5.5022 -1.8750 35 1 7.3550 5.9271 -1.7024 36 1 11.8535 5.6911 -1.4345 37 1 6.8979 2.9644 0.0093 38 1 5.8351 4.3806 0.2031 39 1 4.4103 -1.4476 0.0083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999003785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:46 Heat of formation + Delta-G solvation = 0.369232 kcal Electronic energy + Delta-G solvation = -21716.617314 eV Core-core repulsion = 18433.589072 eV Total energy + Delta-G solvation = -3283.028242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.75602 -39.73366 -37.29276 -34.71952 -33.37463 -32.36262 -31.97942 -31.27225 -28.78001 -26.98594 -25.65666 -23.94374 -22.81687 -21.72925 -21.28970 -20.01305 -18.64728 -17.53981 -17.39554 -16.66345 -16.35902 -15.64984 -15.01698 -14.57689 -14.39768 -14.12261 -13.99402 -13.47842 -13.41521 -13.36873 -13.10399 -13.00599 -12.70542 -12.46728 -12.41938 -12.08427 -11.51924 -11.21761 -10.91861 -10.71521 -10.62170 -10.27747 -9.94270 -9.88903 -9.61665 -9.54972 -9.10129 -8.76166 -8.34300 -7.28368 -5.75892 -3.13363 1.35345 1.83492 2.64503 3.15169 3.37142 3.39070 3.40105 3.45593 4.29407 4.58801 4.61200 4.76680 4.86506 4.94369 5.06078 5.08839 5.13960 5.21416 5.33694 5.40407 5.45736 5.52290 5.58451 5.73492 5.81635 5.86647 5.92256 6.04643 6.08513 6.11188 6.25984 6.40437 6.68940 6.74451 6.84704 6.94030 7.65596 8.00350 8.38857 8.43491 9.20023 9.91555 10.10213 11.42172 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.004000 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.635430 B = 6998.826285 C = 7552.509238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.193 4.193 4 C -0.228 4.228 5 C 0.582 3.418 6 O -0.539 6.539 7 N -0.598 5.598 8 C 0.093 3.907 9 C -0.129 4.129 10 C -0.129 4.129 11 C 0.173 3.827 12 H 0.060 0.940 13 N -0.743 5.743 14 C -0.248 4.248 15 H 0.092 0.908 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.884 3.116 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.093 3.907 23 C 0.039 3.961 24 O -0.176 6.176 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.252 -7.460 0.615 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.213 4.213 4 C -0.232 4.232 5 C 0.371 3.629 6 O -0.417 6.417 7 N -0.331 5.331 8 C -0.030 4.030 9 C -0.168 4.168 10 C -0.168 4.168 11 C 0.063 3.937 12 H 0.078 0.922 13 N -0.385 5.385 14 C -0.377 4.377 15 H 0.110 0.890 16 C -0.189 4.189 17 N -0.578 5.578 18 Si 0.715 3.285 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.031 4.031 23 C -0.030 4.030 24 O -0.072 6.072 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.179 0.821 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -24.572 -8.085 0.861 25.883 hybrid contribution 0.069 1.665 0.077 1.668 sum -24.504 -6.420 0.938 25.348 Atomic orbital electron populations 1.20332 0.84829 1.04146 1.03750 1.22315 0.94100 0.83918 1.05982 1.22756 0.90722 0.99596 1.08176 1.21511 0.94032 0.94128 1.13552 1.17325 0.86469 0.81000 0.78144 1.90823 1.32904 1.70822 1.47192 1.48001 1.15954 1.14305 1.54856 1.22213 0.88054 0.99766 0.92964 1.21879 0.98837 0.99683 0.96426 1.21869 0.95437 0.97942 1.01544 1.20455 0.87337 0.93008 0.92943 0.92241 1.42724 1.02758 1.03436 1.89559 1.19112 0.80900 0.94680 1.43046 0.89036 1.24682 0.95055 0.97390 1.01798 1.69706 0.98008 1.33244 1.56890 0.86555 0.77147 0.87026 0.77818 1.21045 1.21710 1.20312 1.22696 0.86833 0.92925 1.00669 1.24336 0.83549 0.95489 0.99670 1.83756 1.16648 1.35405 1.71407 0.90483 0.89571 0.89512 0.82099 0.91714 0.88505 0.90995 0.91449 0.91371 0.92193 0.80483 0.93008 0.88582 0.92105 0.76676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.40 36.01 0.37 0.01 16 2 C -0.01 -0.13 7.28 -35.74 -0.26 -0.39 16 3 C -0.19 -1.96 8.55 -37.45 -0.32 -2.28 16 4 C -0.23 -3.02 5.73 -103.27 -0.59 -3.61 16 5 C 0.58 9.92 7.65 -12.54 -0.10 9.83 16 6 O -0.54 -11.39 16.43 5.27 0.09 -11.30 16 7 N -0.60 -9.48 2.97 -174.05 -0.52 -10.00 16 8 C 0.09 1.08 5.29 -3.71 -0.02 1.06 16 9 C -0.13 -1.52 6.08 -26.61 -0.16 -1.68 16 10 C -0.13 -1.94 5.35 -26.69 -0.14 -2.08 16 11 C 0.17 3.38 2.92 -67.81 -0.20 3.19 16 12 H 0.06 1.27 8.08 -51.93 -0.42 0.86 16 13 N -0.74 -17.60 4.93 -53.31 -0.26 -17.87 16 14 C -0.25 -7.09 10.41 -15.06 -0.16 -7.25 16 15 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -29.68 13.97 55.49 0.78 -28.90 16 18 Si 0.88 22.12 27.74 -169.99 -4.71 17.41 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 21 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 22 C 0.09 1.76 6.03 -3.71 -0.02 1.74 16 23 C 0.04 0.45 11.99 30.08 0.36 0.81 16 24 O -0.18 -1.86 10.52 7.65 0.08 -1.78 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.16 1.31 6.51 -52.49 -0.34 0.97 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.96 4.02 -51.93 -0.21 0.75 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.36 8.31 5.66 -40.82 -0.23 8.08 16 36 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 37 H 0.10 2.17 7.00 -51.93 -0.36 1.81 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.22 2.04 8.06 -52.48 -0.42 1.61 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -35.11 319.46 -6.45 -41.56 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.38 Total: 6.64 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.33 Total: -0.56 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.01 Total: -56.77 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.17 Total: -13.08 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.11 -6.45 -41.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999003785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.930 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds