Wall clock time and date at job start Tue Mar 31 2020 00:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34179 * 125.43527 * 2 1 4 4 C 1.47029 * 105.95180 * 180.14682 * 3 2 1 5 5 C 1.47380 * 127.19166 * 179.83654 * 4 3 2 6 6 O 1.21609 * 119.99905 * 153.11318 * 5 4 3 7 7 N 1.34777 * 119.99758 * 333.10884 * 5 4 3 8 8 C 1.46931 * 120.60596 * 353.66185 * 7 5 4 9 9 C 1.53190 * 108.76986 * 233.57408 * 8 7 5 10 10 C 1.53039 * 109.34221 * 305.41765 * 9 8 7 11 11 C 1.53036 * 109.53909 * 61.34580 * 10 9 8 12 12 H 1.09006 * 109.49855 * 58.59019 * 11 10 9 13 13 N 1.46501 * 109.49772 * 178.65044 * 11 10 9 14 14 C 1.36936 * 119.99986 * 204.99860 * 13 11 10 15 15 H 1.07999 * 120.00054 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00095 * 180.02562 * 14 13 11 17 17 N 1.31621 * 120.00661 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00020 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47266 * 89.99661 * 18 16 14 20 20 H 1.48497 * 109.47253 * 210.00263 * 18 16 14 21 21 H 1.48500 * 109.46995 * 330.00290 * 18 16 14 22 22 C 1.46928 * 120.62622 * 173.68355 * 7 5 4 23 23 C 1.36418 * 105.61276 * 359.57276 * 4 3 2 24 24 O 1.33650 * 108.39974 * 0.26500 * 23 4 3 25 25 H 1.08999 * 109.47138 * 180.35169 * 1 2 3 26 26 H 1.08999 * 109.47251 * 300.35948 * 1 2 3 27 27 H 1.08998 * 109.47223 * 60.35990 * 1 2 3 28 28 H 1.08001 * 127.02706 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.55849 * 113.81005 * 8 7 5 30 30 H 1.09001 * 109.61461 * 353.37626 * 8 7 5 31 31 H 1.08996 * 109.49940 * 185.44842 * 9 8 7 32 32 H 1.09007 * 109.49621 * 65.38383 * 9 8 7 33 33 H 1.09004 * 109.46309 * 181.37124 * 10 9 8 34 34 H 1.09005 * 109.45844 * 301.33106 * 10 9 8 35 35 H 0.96996 * 120.00242 * 25.00713 * 13 11 10 36 36 H 0.96998 * 120.00496 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.58607 * 6.60372 * 22 7 5 38 38 H 1.09004 * 109.69762 * 246.24910 * 22 7 5 39 39 H 1.08004 * 125.79905 * 180.25668 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6710 0.6029 -0.0036 5 6 4.9025 1.4126 -0.0083 6 8 5.9280 0.9623 0.4654 7 7 4.8920 2.6519 -0.5377 8 6 3.7022 3.1569 -1.2365 9 6 4.1177 3.6451 -2.6278 10 6 5.2477 4.6680 -2.4894 11 6 6.4588 4.0064 -1.8280 12 1 6.7828 3.1568 -2.4292 13 7 7.5510 4.9774 -1.7253 14 6 8.8484 4.5443 -1.6613 15 1 9.0666 3.4869 -1.6871 16 6 9.8832 5.4643 -1.5635 17 7 11.1304 5.0482 -1.5025 18 14 9.5058 7.2933 -1.5183 19 1 9.3201 7.7257 -0.1099 20 1 10.6337 8.0466 -2.1228 21 1 8.2634 7.5614 -2.2862 22 6 6.0700 3.5230 -0.4273 23 6 3.5790 -0.7582 0.0043 24 8 2.2852 -1.0935 0.0063 25 1 -0.3633 -1.0276 0.0063 26 1 -0.3634 0.5194 0.8867 27 1 -0.3633 0.5082 -0.8932 28 1 1.9595 2.1231 -0.0004 29 1 3.2715 3.9842 -0.6725 30 1 2.9682 2.3570 -1.3341 31 1 3.2639 4.1106 -3.1201 32 1 4.4636 2.7991 -3.2219 33 1 5.5284 5.0348 -3.4768 34 1 4.9090 5.5022 -1.8750 35 1 7.3550 5.9271 -1.7024 36 1 11.8535 5.6911 -1.4345 37 1 6.8979 2.9644 0.0093 38 1 5.8351 4.3806 0.2031 39 1 4.4103 -1.4476 0.0083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999003785.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:45 Heat of formation + Delta-G solvation = -24.861683 kcal Electronic energy + Delta-G solvation = -21717.711408 eV Core-core repulsion = 18433.589072 eV Total energy + Delta-G solvation = -3284.122336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.59009 -41.04663 -38.74029 -36.40635 -34.47826 -33.71640 -32.94587 -32.82878 -30.44381 -27.65459 -26.87872 -25.72140 -23.94799 -23.22889 -22.23773 -21.45068 -19.78754 -19.48040 -18.45487 -17.67649 -17.26510 -16.97255 -16.59617 -16.28166 -15.67166 -15.43852 -15.25467 -14.90992 -14.48767 -14.28615 -14.08368 -13.96970 -13.86551 -13.71573 -13.68129 -13.22565 -12.97565 -12.69216 -12.56796 -12.10512 -11.94114 -11.87665 -11.77850 -11.40894 -11.25091 -11.07873 -10.63428 -9.87806 -9.50934 -9.26928 -8.05887 -5.42667 0.38367 1.03992 1.35792 1.41790 1.48959 1.79772 1.99760 2.20120 2.46287 3.24457 3.44934 3.51693 3.69699 3.95671 3.99871 4.05199 4.10257 4.24953 4.32648 4.36984 4.50045 4.61115 4.68030 4.82121 4.82995 4.84519 4.89958 4.91776 4.99994 5.09787 5.13959 5.33488 5.41876 5.44213 5.50509 5.72741 6.04366 6.17623 6.40947 7.02567 7.09141 7.74963 7.98229 9.16030 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.004000 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.635430 B = 6998.826285 C = 7552.509238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.006 4.006 3 C -0.199 4.199 4 C -0.254 4.254 5 C 0.574 3.426 6 O -0.599 6.599 7 N -0.596 5.596 8 C 0.087 3.913 9 C -0.122 4.122 10 C -0.121 4.121 11 C 0.170 3.830 12 H 0.026 0.974 13 N -0.743 5.743 14 C -0.240 4.240 15 H 0.042 0.958 16 C -0.065 4.065 17 N -0.986 5.986 18 Si 0.965 3.035 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.242 1.242 22 C 0.104 3.896 23 C 0.041 3.959 24 O -0.178 6.178 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.186 0.814 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.371 0.629 36 H 0.259 0.741 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.185 -5.539 0.032 30.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 C -0.217 4.217 4 C -0.259 4.259 5 C 0.365 3.635 6 O -0.482 6.482 7 N -0.328 5.328 8 C -0.033 4.033 9 C -0.161 4.161 10 C -0.159 4.159 11 C 0.061 3.939 12 H 0.044 0.956 13 N -0.386 5.386 14 C -0.371 4.371 15 H 0.060 0.940 16 C -0.256 4.256 17 N -0.635 5.635 18 Si 0.791 3.209 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.166 1.166 22 C -0.021 4.021 23 C -0.030 4.030 24 O -0.074 6.074 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.127 0.873 28 H 0.203 0.797 29 H 0.111 0.889 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.206 0.794 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -29.617 -6.167 0.252 30.253 hybrid contribution 1.560 0.896 0.266 1.819 sum -28.057 -5.271 0.518 28.552 Atomic orbital electron populations 1.20579 0.81526 1.05281 1.05595 1.23140 0.95722 0.82953 1.03588 1.22936 0.88692 1.01175 1.08940 1.21325 0.93908 0.94539 1.16094 1.17958 0.87078 0.81325 0.77138 1.90784 1.35395 1.72138 1.49845 1.48063 1.16208 1.13687 1.54823 1.22624 0.86519 1.01460 0.92709 1.21893 0.98982 0.98547 0.96650 1.21804 0.93904 0.99019 1.01166 1.20621 0.88328 0.91817 0.93166 0.95556 1.42623 1.01777 1.04562 1.89651 1.18956 0.83568 0.92626 1.41976 0.93973 1.25648 0.94551 1.03493 1.01935 1.69921 0.99462 1.35308 1.58855 0.85272 0.78099 0.79143 0.78393 1.20305 1.22105 1.16632 1.22222 0.87002 0.92976 0.99912 1.24536 0.84394 0.95290 0.98765 1.83799 1.16187 1.36273 1.71105 0.89767 0.87864 0.87308 0.79665 0.88854 0.86202 0.86461 0.92723 0.91277 0.90128 0.79434 0.93181 0.93828 0.90875 0.75938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.40 71.24 0.74 0.35 16 2 C -0.01 -0.08 7.28 24.76 0.18 0.10 16 3 C -0.20 -3.41 8.55 23.65 0.20 -3.21 16 4 C -0.25 -6.59 5.73 -18.99 -0.11 -6.70 16 5 C 0.57 20.27 7.65 86.65 0.66 20.93 16 6 O -0.60 -27.41 16.43 -4.06 -0.07 -27.47 16 7 N -0.60 -18.81 2.97 -822.83 -2.45 -21.26 16 8 C 0.09 1.72 5.29 86.36 0.46 2.18 16 9 C -0.12 -2.41 6.08 30.67 0.19 -2.23 16 10 C -0.12 -3.28 5.35 30.62 0.16 -3.12 16 11 C 0.17 6.75 2.92 45.07 0.13 6.89 16 12 H 0.03 1.20 8.08 -2.38 -0.02 1.18 16 13 N -0.74 -35.56 4.93 -322.58 -1.59 -37.15 16 14 C -0.24 -14.45 10.41 84.03 0.88 -13.58 16 15 H 0.04 2.88 8.06 -2.91 -0.02 2.86 16 16 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 17 N -0.99 -65.66 13.97 21.65 0.30 -65.36 16 18 Si 0.97 45.85 27.74 68.60 1.90 47.75 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.24 -10.03 6.52 99.48 0.65 -9.39 16 22 C 0.10 4.09 6.03 86.36 0.52 4.61 16 23 C 0.04 0.92 11.99 67.39 0.81 1.73 16 24 O -0.18 -3.42 10.52 4.47 0.05 -3.37 16 25 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.19 2.14 6.51 -2.91 -0.02 2.12 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.12 1.89 4.02 -2.39 -0.01 1.88 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.37 16.35 5.66 -92.71 -0.52 15.83 16 36 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 37 H 0.04 2.15 7.00 -2.39 -0.02 2.13 16 38 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 39 H 0.22 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -84.12 319.46 3.92 -80.21 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.48 Total: 22.19 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 5.29 Total: 4.46 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -3.73 Total: -123.76 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.02 Total: -30.84 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Total: -84.12 3.92 -80.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999003785.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.344 kcal (2) G-P(sol) polarization free energy of solvation -84.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds