Wall clock time and date at job start Tue Mar 31 2020 01:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35135 * 126.44174 * 2 1 4 4 O 1.33930 * 108.76678 * 179.97438 * 3 2 1 5 5 C 1.34918 * 109.38467 * 359.97438 * 4 3 2 6 6 C 1.46650 * 125.98524 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99791 * 173.47933 * 6 5 4 8 8 N 1.34775 * 120.00184 * 353.75676 * 6 5 4 9 9 C 1.46922 * 120.63152 * 3.40185 * 8 6 5 10 10 C 1.52760 * 109.01099 * 233.58483 * 9 8 6 11 11 C 1.53045 * 109.38194 * 305.58683 * 10 9 8 12 12 C 1.53047 * 109.53596 * 61.24098 * 11 10 9 13 13 H 1.08999 * 109.49567 * 58.58504 * 12 11 10 14 14 N 1.46498 * 109.52117 * 178.66446 * 12 11 10 15 15 C 1.36944 * 119.99817 * 204.85121 * 14 12 11 16 16 H 1.07994 * 120.00073 * 0.02562 * 15 14 12 17 17 C 1.38812 * 119.99890 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00103 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00105 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47360 * 89.99781 * 19 17 15 21 21 H 1.48496 * 109.47347 * 210.00041 * 19 17 15 22 22 H 1.48505 * 109.47190 * 330.00496 * 19 17 15 23 23 C 1.46933 * 120.63113 * 183.68434 * 8 6 5 24 24 C 1.36540 * 108.02488 * 0.24321 * 5 4 3 25 25 H 1.09001 * 109.47321 * 90.02492 * 1 2 3 26 26 H 1.08995 * 109.47315 * 210.02610 * 1 2 3 27 27 H 1.09002 * 109.46890 * 330.02389 * 1 2 3 28 28 H 1.07996 * 125.61568 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.58783 * 353.42290 * 9 8 6 30 30 H 1.09003 * 109.58659 * 113.84272 * 9 8 6 31 31 H 1.08996 * 109.56733 * 185.55732 * 10 9 8 32 32 H 1.08996 * 109.38706 * 65.51312 * 10 9 8 33 33 H 1.08998 * 109.46543 * 301.22137 * 11 10 9 34 34 H 1.09005 * 109.45999 * 181.25758 * 11 10 9 35 35 H 0.97003 * 120.00208 * 24.85460 * 14 12 11 36 36 H 0.96995 * 120.00295 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.58381 * 246.15665 * 23 8 6 38 38 H 1.09005 * 109.58535 * 6.58086 * 23 8 6 39 39 H 1.08000 * 126.65038 * 179.75876 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0006 5 6 3.6260 -0.6681 0.0015 6 6 4.8379 -1.4940 0.0018 7 8 4.7509 -2.7019 0.1224 8 7 6.0481 -0.9149 -0.1258 9 6 6.1751 0.5474 -0.1914 10 6 6.9677 0.9224 -1.4423 11 6 8.3030 0.1746 -1.4407 12 6 8.0449 -1.3337 -1.4644 13 1 7.4637 -1.5895 -2.3504 14 7 9.3232 -2.0487 -1.4951 15 6 9.3883 -3.3129 -2.0174 16 1 8.4974 -3.7827 -2.4071 17 6 10.5994 -3.9906 -2.0460 18 7 10.6621 -5.2055 -2.5485 19 14 12.1406 -3.1777 -1.3726 20 1 12.2790 -3.4982 0.0708 21 1 13.3280 -3.6824 -2.1078 22 1 12.0400 -1.7062 -1.5454 23 6 7.2651 -1.7341 -0.2081 24 6 2.3408 -1.1292 -0.0040 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 1.9770 2.1145 0.0004 29 1 5.1840 0.9985 -0.2395 30 1 6.7006 0.9086 0.6927 31 1 7.1524 1.9966 -1.4490 32 1 6.3969 0.6458 -2.3287 33 1 8.8630 0.4331 -0.5420 34 1 8.8791 0.4583 -2.3215 35 1 10.1235 -1.6266 -1.1454 36 1 11.5084 -5.6789 -2.5688 37 1 7.8813 -1.5627 0.6746 38 1 6.9929 -2.7879 -0.2674 39 1 2.0266 -2.1624 -0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999962353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:24 Heat of formation + Delta-G solvation = 3.862951 kcal Electronic energy + Delta-G solvation = -21763.007406 eV Core-core repulsion = 18480.130663 eV Total energy + Delta-G solvation = -3282.876742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.91457 -39.73343 -37.44526 -34.87353 -34.23946 -32.35992 -31.38284 -30.69683 -28.94657 -27.46998 -25.59052 -23.90609 -22.66517 -21.73348 -21.18190 -20.24965 -19.23755 -17.56154 -17.37418 -16.66874 -16.49624 -15.74708 -14.92704 -14.61103 -14.33779 -14.18053 -13.83531 -13.68776 -13.43718 -13.34049 -13.01882 -12.95884 -12.69503 -12.48014 -12.42697 -11.96116 -11.53579 -11.17993 -10.93012 -10.72812 -10.53014 -10.29627 -10.03401 -9.91809 -9.87166 -9.59182 -9.14145 -8.78935 -8.40353 -7.31173 -5.77742 -3.15482 1.00196 2.15807 2.51430 3.13382 3.27959 3.36444 3.38950 3.44688 4.37363 4.55359 4.57399 4.73319 4.86933 5.03095 5.07553 5.19327 5.33761 5.36052 5.42296 5.44058 5.49385 5.62588 5.69806 5.73607 5.78764 5.88855 5.97926 6.06427 6.09805 6.22930 6.25811 6.34802 6.61626 6.68462 6.76653 6.87956 7.51071 7.97691 8.18602 8.40876 9.17808 9.89356 10.07779 11.40207 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033719 B = 0.004011 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.200568 B = 6978.806700 C = 7548.851386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.191 4.191 3 C -0.028 4.028 4 O -0.155 6.155 5 C -0.063 4.063 6 C 0.593 3.407 7 O -0.519 6.519 8 N -0.595 5.595 9 C 0.090 3.910 10 C -0.128 4.128 11 C -0.130 4.130 12 C 0.173 3.827 13 H 0.060 0.940 14 N -0.742 5.742 15 C -0.250 4.250 16 H 0.092 0.908 17 C 0.008 3.992 18 N -0.930 5.930 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C 0.092 3.908 24 C -0.123 4.123 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.205 0.795 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.363 0.637 36 H 0.260 0.740 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.198 17.938 5.848 25.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.193 4.193 3 C -0.096 4.096 4 O -0.052 6.052 5 C -0.115 4.115 6 C 0.380 3.620 7 O -0.396 6.396 8 N -0.328 5.328 9 C -0.032 4.032 10 C -0.167 4.167 11 C -0.168 4.168 12 C 0.062 3.938 13 H 0.078 0.922 14 N -0.384 5.384 15 C -0.379 4.379 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.577 5.577 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.032 4.032 24 C -0.144 4.144 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.222 0.778 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.196 0.804 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.960 17.210 5.785 24.845 hybrid contribution 1.066 0.488 0.477 1.265 sum -15.895 17.697 6.261 24.597 Atomic orbital electron populations 1.20180 0.88805 1.02743 1.02285 1.20463 0.97556 0.92466 1.08791 1.24313 0.80998 0.99947 1.04363 1.84218 1.27945 1.21900 1.71091 1.22263 0.96316 0.80318 1.12566 1.16771 0.81133 0.86307 0.77794 1.90904 1.85350 1.12659 1.50736 1.48166 1.06444 1.07565 1.70594 1.22227 1.02477 0.79912 0.98618 1.21787 0.96837 1.00092 0.97975 1.21882 0.96493 0.96155 1.02318 1.20463 0.88099 0.89802 0.95440 0.92169 1.42721 1.04414 1.16898 1.74329 1.19105 0.96509 0.89490 1.32821 0.89023 1.24685 0.97322 0.96118 1.00724 1.69704 1.25541 1.11849 1.50639 0.86556 0.84215 0.78849 0.78924 1.21011 1.21693 1.20283 1.22810 0.83222 0.96856 1.00280 1.21839 0.90571 1.00567 1.01413 0.91299 0.91304 0.91576 0.77818 0.87552 0.91300 0.90794 0.91438 0.92086 0.91239 0.80415 0.92973 0.91746 0.88431 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.00 0.37 -0.17 16 2 C -0.19 -1.84 6.14 -104.93 -0.64 -2.48 16 3 C -0.03 -0.23 12.00 29.63 0.36 0.12 16 4 O -0.15 -1.73 7.06 4.98 0.04 -1.70 16 5 C -0.06 -0.88 6.86 -36.80 -0.25 -1.13 16 6 C 0.59 10.18 7.66 -12.87 -0.10 10.08 16 7 O -0.52 -10.77 16.30 5.19 0.08 -10.69 16 8 N -0.60 -9.54 2.98 -174.58 -0.52 -10.06 16 9 C 0.09 1.10 6.29 -3.94 -0.02 1.07 16 10 C -0.13 -1.53 6.07 -26.83 -0.16 -1.69 16 11 C -0.13 -1.94 5.36 -26.68 -0.14 -2.08 16 12 C 0.17 3.33 2.92 -67.81 -0.20 3.13 16 13 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 14 N -0.74 -17.40 4.93 -53.31 -0.26 -17.66 16 15 C -0.25 -7.08 10.41 -15.06 -0.16 -7.24 16 16 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 17 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 19 Si 0.88 21.99 27.73 -169.99 -4.71 17.28 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 23 C 0.09 1.73 6.01 -3.71 -0.02 1.71 16 24 C -0.12 -1.54 10.58 -39.39 -0.42 -1.96 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.11 1.18 3.75 -55.44 -0.21 0.98 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.36 8.25 5.66 -40.82 -0.23 8.02 16 36 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.10 2.16 7.03 -51.93 -0.36 1.79 16 39 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -33.84 320.17 -6.73 -40.57 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.47 Total: 6.63 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.49 Total: -0.51 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.01 Total: -56.41 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.12 Total: -12.39 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.84 -6.73 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999962353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.434 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds